RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 TYW1BQ6NUM6 668 aa5.88□□□□□ -1.47
LIMA1-207ENST00000551486 TRAF7Q6Q0C0 670 aa5.88□□□□□ -1.47
LIMA1-207ENST00000551486 DDX27Q96GQ7 796 aaKnown RBP5.88□□□□□ -1.47
LIMA1-207ENST00000551486 KIAA1468Q9P260 1216 aa5.88□□□□□ -1.47
LIMA1-207ENST00000551486 GFRA3O60609 400 aa5.87□□□□□ -1.47
LIMA1-207ENST00000551486 LARP6Q9BRS8 491 aaKnown RBP5.87□□□□□ -1.47
LIMA1-207ENST00000551486 WBP1LQ9NX94 342 aa5.87□□□□□ -1.47
LIMA1-207ENST00000551486 LOC100996750A0A140TA64 210 aa5.86□□□□□ -1.47
LIMA1-207ENST00000551486 LRCH3Q96II8 777 aa5.86□□□□□ -1.47
LIMA1-207ENST00000551486 KRTAP4-6Q9BYQ5 205 aa5.86□□□□□ -1.47
LIMA1-207ENST00000551486 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-207ENST00000551486 TSR3Q9UJK0 312 aaKnown RBP5.86□□□□□ -1.47
LIMA1-207ENST00000551486 PCDHGA10Q9Y5H3 936 aa5.86□□□□□ -1.47
LIMA1-207ENST00000551486 NCKAP5LQ9HCH0 1330 aa5.85□□□□□ -1.47
LIMA1-207ENST00000551486 LCE2BO14633 110 aa5.85□□□□□ -1.47
LIMA1-207ENST00000551486 PHF14O94880 888 aa5.85□□□□□ -1.47
LIMA1-207ENST00000551486 COL9A1P20849 921 aa5.85□□□□□ -1.47
LIMA1-207ENST00000551486 DNAJC5Q9H3Z4 198 aa5.85□□□□□ -1.47
LIMA1-207ENST00000551486 FAM98CQ17RN3 349 aaKnown RBP5.84□□□□□ -1.47
LIMA1-207ENST00000551486 EPAS1Q99814 870 aa5.84□□□□□ -1.47
LIMA1-207ENST00000551486 HPS5Q9UPZ3 1129 aa5.83□□□□□ -1.48
LIMA1-207ENST00000551486 NRG2O14511 850 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-207ENST00000551486 PPP4CP60510 307 aa5.82□□□□□ -1.48
LIMA1-207ENST00000551486 SEPT9Q9UHD8 586 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-207ENST00000551486 TRIM6-TRIM34B2RNG4 842 aa5.81□□□□□ -1.48
LIMA1-207ENST00000551486 NKX1-1Q15270 411 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-207ENST00000551486 C6orf132Q5T0Z8 1188 aa5.81□□□□□ -1.48
LIMA1-207ENST00000551486 PACS2Q86VP3 889 aa5.81□□□□□ -1.48
LIMA1-207ENST00000551486 MFSD10Q14728 455 aa5.8□□□□□ -1.48
LIMA1-207ENST00000551486 PRKD2Q9BZL6 878 aa5.8□□□□□ -1.48
LIMA1-207ENST00000551486 ZNF787Q6DD87 383 aa5.79□□□□□ -1.48
LIMA1-207ENST00000551486 V9GY48 417 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-207ENST00000551486 EMILIN3Q9NT22 766 aa5.78□□□□□ -1.48
LIMA1-207ENST00000551486 HDGFP51858 240 aaKnown RBP5.77□□□□□ -1.49
LIMA1-207ENST00000551486 RBM33Q96EV2 1170 aaKnown RBP5.76□□□□□ -1.49
LIMA1-207ENST00000551486 IL21Q9HBE4 155 aa5.76□□□□□ -1.49
LIMA1-207ENST00000551486 GGCXP38435 758 aa5.75□□□□□ -1.49
LIMA1-207ENST00000551486 PDZRN3Q9UPQ7 1066 aa5.75□□□□□ -1.49
LIMA1-207ENST00000551486 GTPBP6O43824 516 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-207ENST00000551486 TJAP1Q5JTD0 557 aa5.74□□□□□ -1.49
LIMA1-207ENST00000551486 PPP1R18Q6NYC8 613 aa5.74□□□□□ -1.49
LIMA1-207ENST00000551486 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.74□□□□□ -1.49
LIMA1-207ENST00000551486 NECTIN2Q92692 538 aa5.73□□□□□ -1.49
LIMA1-207ENST00000551486 MTRQ99707 1265 aa5.73□□□□□ -1.49
LIMA1-207ENST00000551486 MAP3K7O43318 606 aa5.72□□□□□ -1.49
LIMA1-207ENST00000551486 ZNF775Q96BV0 537 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-207ENST00000551486 DPYSL4O14531 572 aa5.71□□□□□ -1.5
LIMA1-207ENST00000551486 SAMD7Q7Z3H4 446 aa5.71□□□□□ -1.5
LIMA1-207ENST00000551486 CERKQ8TCT0 537 aa5.71□□□□□ -1.5
LIMA1-207ENST00000551486 DDX12PQ92771 950 aa5.71□□□□□ -1.5
LIMA1-207ENST00000551486 RNF40O75150 1001 aa5.7□□□□□ -1.5
LIMA1-207ENST00000551486 SLC4A3P48751 1232 aa5.7□□□□□ -1.5
LIMA1-207ENST00000551486 NBR1Q14596 966 aa5.7□□□□□ -1.5
LIMA1-207ENST00000551486 TSKSQ9UJT2 592 aa5.7□□□□□ -1.5
LIMA1-207ENST00000551486 NBPF26B4DH59 902 aa5.69□□□□□ -1.5
LIMA1-207ENST00000551486 EN1Q05925 392 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-207ENST00000551486 PRSS12P56730 875 aa5.68□□□□□ -1.5
LIMA1-207ENST00000551486 CAMK2BQ13554 666 aa5.68□□□□□ -1.5
LIMA1-207ENST00000551486 CDCA7LQ96GN5 454 aa5.68□□□□□ -1.5
LIMA1-207ENST00000551486 TMUB1Q9BVT8 246 aa5.68□□□□□ -1.5
LIMA1-207ENST00000551486 ZNF516Q92618 1163 aa5.67□□□□□ -1.5
LIMA1-207ENST00000551486 TATDN2Q93075 761 aa5.67□□□□□ -1.5
LIMA1-207ENST00000551486 PNMA3Q9UL41 463 aa5.67□□□□□ -1.5
LIMA1-207ENST00000551486 SPDYE16A6NNV3 312 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-207ENST00000551486 SMAPO00193 183 aa5.66□□□□□ -1.5
LIMA1-207ENST00000551486 DCAF8L2P0C7V8 631 aa5.66□□□□□ -1.5
LIMA1-207ENST00000551486 TSR1Q2NL82 804 aaKnown RBP5.66□□□□□ -1.5
LIMA1-207ENST00000551486 PKDCCQ504Y2 493 aa5.66□□□□□ -1.5
LIMA1-207ENST00000551486 CADPS2Q86UW7 1296 aa5.64□□□□□ -1.51
LIMA1-207ENST00000551486 SLF2Q8IX21 1173 aa5.64□□□□□ -1.51
LIMA1-207ENST00000551486 PRR14Q9BWN1 585 aa5.64□□□□□ -1.51
LIMA1-207ENST00000551486 DGAT1O75907 488 aa5.63□□□□□ -1.51
LIMA1-207ENST00000551486 APLP1P51693 650 aa5.63□□□□□ -1.51
LIMA1-207ENST00000551486 COPS2P61201 443 aa5.63□□□□□ -1.51
LIMA1-207ENST00000551486 NKX2-3Q8TAU0 364 aa5.63□□□□□ -1.51
LIMA1-207ENST00000551486 SLC19A1P41440 591 aa5.62□□□□□ -1.51
LIMA1-207ENST00000551486 PDIA6Q15084 440 aa5.62□□□□□ -1.51
LIMA1-207ENST00000551486 NUDT18Q6ZVK8 323 aa5.62□□□□□ -1.51
LIMA1-207ENST00000551486 ZPR1O75312 459 aa5.61□□□□□ -1.51
LIMA1-207ENST00000551486 RBM27Q9P2N5 1060 aaKnown RBP5.6□□□□□ -1.51
LIMA1-207ENST00000551486 GRXCR2A6NFK2 248 aa5.59□□□□□ -1.51
LIMA1-207ENST00000551486 MYT1Q01538 1121 aa5.59□□□□□ -1.51
LIMA1-207ENST00000551486 ZNF598Q86UK7 904 aaKnown RBP5.59□□□□□ -1.51
LIMA1-207ENST00000551486 FAM198AQ9UFP1 575 aa5.59□□□□□ -1.51
LIMA1-207ENST00000551486 PRR20EP86478 221 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 PRR20CP86479 221 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 PRR20DP86480 221 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 PRR20BP86481 221 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 PRR20AP86496 221 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 SWT1Q5T5J6 900 aaKnown RBP5.58□□□□□ -1.52
LIMA1-207ENST00000551486 PCDHB3Q9Y5E6 796 aa5.58□□□□□ -1.52
LIMA1-207ENST00000551486 FAM187AA6NFU0 413 aa5.57□□□□□ -1.52
LIMA1-207ENST00000551486 RNF223E7ERA6 249 aa5.57□□□□□ -1.52
LIMA1-207ENST00000551486 SPRYD7Q5W111 196 aa5.57□□□□□ -1.52
LIMA1-207ENST00000551486 TREML4Q6UXN2 200 aa5.56□□□□□ -1.52
LIMA1-207ENST00000551486 ANKLE1Q8NAG6 615 aa5.56□□□□□ -1.52
LIMA1-207ENST00000551486 C3orf80F5H4A9 247 aa5.55□□□□□ -1.52
LIMA1-207ENST00000551486 ZNF697Q5TEC3 545 aa5.55□□□□□ -1.52
LIMA1-207ENST00000551486 TRIM67Q6ZTA4 783 aa5.55□□□□□ -1.52
LIMA1-207ENST00000551486 WDR70Q9NW82 654 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms