RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.39■□□□□ 0.693e-6■□□□□ 10.3
CUX1-214ENST00000550008 MIA2Q96PC5 1412 aa19.39■□□□□ 0.69
CUX1-214ENST00000550008 TMEM132EQ6IEE7 984 aa19.39■□□□□ 0.69
CUX1-214ENST00000550008 DAPK1P53355 1430 aa19.38■□□□□ 0.69
CUX1-214ENST00000550008 CNTLNQ9NXG0 1405 aa19.38■□□□□ 0.69
CUX1-214ENST00000550008 LAMC3Q9Y6N6 1575 aa19.38■□□□□ 0.69
CUX1-214ENST00000550008 KIAA0586Q9BVV6 1533 aa19.38■□□□□ 0.69
CUX1-214ENST00000550008 C9orf84Q5VXU9 1444 aa19.37■□□□□ 0.69
CUX1-214ENST00000550008 HDGFL2Q7Z4V5 671 aaPredicted RBP19.37■□□□□ 0.69
CUX1-214ENST00000550008 EXOC6Q8TAG9 804 aa19.37■□□□□ 0.69
CUX1-214ENST00000550008 BCL2L13Q9BXK5 485 aa19.37■□□□□ 0.69
CUX1-214ENST00000550008 SYNJ2O15056 1496 aa19.37■□□□□ 0.69
CUX1-214ENST00000550008 EIF3AQ14152 1382 aaKnown RBP19.36■□□□□ 0.69
CUX1-214ENST00000550008 CFAP70Q5T0N1 1121 aa19.36■□□□□ 0.69
CUX1-214ENST00000550008 APAF1O14727 1248 aa19.35■□□□□ 0.69
CUX1-214ENST00000550008 ARHGAP5Q13017 1502 aa19.35■□□□□ 0.69
CUX1-214ENST00000550008 MINK1Q8N4C8 1332 aaPredicted RBP19.35■□□□□ 0.69
CUX1-214ENST00000550008 IQGAP2Q13576 1575 aa19.34■□□□□ 0.69
CUX1-214ENST00000550008 ERICH6BQ5W0A0 696 aa19.33■□□□□ 0.68
CUX1-214ENST00000550008 PTPRKQ15262 1439 aa19.32■□□□□ 0.68
CUX1-214ENST00000550008 DDRGK1Q96HY6 314 aa19.32■□□□□ 0.68
CUX1-214ENST00000550008 HECW1Q76N89 1606 aa19.31■□□□□ 0.68
CUX1-214ENST00000550008 KIAA1107Q9UPP5 1409 aa19.31■□□□□ 0.68
CUX1-214ENST00000550008 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.31■□□□□ 0.688e-6■□□□□ 8.4
CUX1-214ENST00000550008 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
CUX1-214ENST00000550008 SUPT6HQ7KZ85 1726 aaKnown RBP19.3■□□□□ 0.68
CUX1-214ENST00000550008 CDCA7LQ96GN5 454 aa19.29■□□□□ 0.68
CUX1-214ENST00000550008 ABCC5O15440 1437 aa19.28■□□□□ 0.68
CUX1-214ENST00000550008 APBB1O00213 710 aa19.28■□□□□ 0.68
CUX1-214ENST00000550008 PAK3O75914 559 aaPredicted RBP19.28■□□□□ 0.68
CUX1-214ENST00000550008 BECN1Q14457 450 aa19.27■□□□□ 0.68
CUX1-214ENST00000550008 FAM69CQ0P6D2 419 aa19.27■□□□□ 0.68
CUX1-214ENST00000550008 PDE3BQ13370 1112 aa19.27■□□□□ 0.68
CUX1-214ENST00000550008 HDGFP51858 240 aaKnown RBP19.27■□□□□ 0.67
CUX1-214ENST00000550008 TERF2IPQ9NYB0 399 aa19.27■□□□□ 0.67
CUX1-214ENST00000550008 VGFO15240 615 aaPredicted RBP19.26■□□□□ 0.67
CUX1-214ENST00000550008 SPRYD3Q8NCJ5 442 aa19.26■□□□□ 0.67
CUX1-214ENST00000550008 RRP1P56182 461 aaKnown RBP19.26■□□□□ 0.67
CUX1-214ENST00000550008 SCAPERQ9BY12 1400 aa19.25■□□□□ 0.67
CUX1-214ENST00000550008 GRIN2AQ12879 1464 aa19.25■□□□□ 0.67
CUX1-214ENST00000550008 ELL2O00472 640 aaPredicted RBP19.25■□□□□ 0.67
CUX1-214ENST00000550008 CRBNQ96SW2 442 aa19.25■□□□□ 0.67
CUX1-214ENST00000550008 CUL7Q14999 1698 aa19.25■□□□□ 0.67
CUX1-214ENST00000550008 ITPRIPQ8IWB1 547 aa19.24■□□□□ 0.67
CUX1-214ENST00000550008 ADAMTS8Q9UP79 889 aa19.24■□□□□ 0.67
CUX1-214ENST00000550008 ANKRD30BQ9BXX2 1392 aa19.24■□□□□ 0.67
CUX1-214ENST00000550008 RAPGEF3O95398 923 aa19.23■□□□□ 0.67
CUX1-214ENST00000550008 MAP3K1Q13233 1512 aa19.23■□□□□ 0.67
CUX1-214ENST00000550008 SMC4Q9NTJ3 1288 aa19.23■□□□□ 0.67
CUX1-214ENST00000550008 PTPN23Q9H3S7 1636 aa19.23■□□□□ 0.67
CUX1-214ENST00000550008 CENPJQ9HC77 1338 aaPredicted RBP19.22■□□□□ 0.67
CUX1-214ENST00000550008 HAP1P54257 671 aaPredicted RBP19.22■□□□□ 0.67
CUX1-214ENST00000550008 PNNQ9H307 717 aaKnown RBP19.21■□□□□ 0.67
CUX1-214ENST00000550008 CABP2Q9NPB3 220 aa19.2■□□□□ 0.66
CUX1-214ENST00000550008 TCERG1O14776 1098 aaKnown RBP19.19■□□□□ 0.66
CUX1-214ENST00000550008 TPRNQ4KMQ1 711 aa19.18■□□□□ 0.66
CUX1-214ENST00000550008 THOC2Q8NI27 1593 aaKnown RBP19.18■□□□□ 0.66
CUX1-214ENST00000550008 GGNBP2Q9H3C7 697 aa19.18■□□□□ 0.66
CUX1-214ENST00000550008 COG6Q9Y2V7 657 aa19.18■□□□□ 0.66
CUX1-214ENST00000550008 EVC2Q86UK5 1308 aa19.18■□□□□ 0.66
CUX1-214ENST00000550008 CAMSAP2Q08AD1 1489 aa19.17■□□□□ 0.66
CUX1-214ENST00000550008 CGNL1Q0VF96 1302 aa19.17■□□□□ 0.66
CUX1-214ENST00000550008 LTV1Q96GA3 475 aaPredicted RBP19.17■□□□□ 0.66
CUX1-214ENST00000550008 MAGI1Q96QZ7 1491 aaPredicted RBP19.17■□□□□ 0.66
CUX1-214ENST00000550008 NCOA1Q15788 1441 aa19.17■□□□□ 0.66
CUX1-214ENST00000550008 MS4A1P11836 297 aa19.16■□□□□ 0.66
CUX1-214ENST00000550008 PNISRQ8TF01 805 aaKnown RBP19.16■□□□□ 0.66
CUX1-214ENST00000550008 SLC12A5Q9H2X9 1139 aa19.16■□□□□ 0.66
CUX1-214ENST00000550008 MAPKBP1O60336 1514 aa19.16■□□□□ 0.66
CUX1-214ENST00000550008 ROCK1Q13464 1354 aa19.16■□□□□ 0.66
CUX1-214ENST00000550008 NGDNQ8NEJ9 315 aaKnown RBP19.14■□□□□ 0.66
CUX1-214ENST00000550008 RTF1Q92541 710 aaKnown RBP19.14■□□□□ 0.65
CUX1-214ENST00000550008 AKNAQ7Z591 1439 aa19.13■□□□□ 0.65
CUX1-214ENST00000550008 SLC4A3P48751 1232 aa19.13■□□□□ 0.65
CUX1-214ENST00000550008 SLKQ9H2G2 1235 aaPredicted RBP19.13■□□□□ 0.65
CUX1-214ENST00000550008 RTN4Q9NQC3 1192 aaKnown RBP19.13■□□□□ 0.65
CUX1-214ENST00000550008 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
CUX1-214ENST00000550008 IPO8O15397 1037 aaKnown RBP19.1■□□□□ 0.65
CUX1-214ENST00000550008 MTHFSP49914 203 aa19.1■□□□□ 0.65
CUX1-214ENST00000550008 ANP32BQ92688 251 aaKnown RBP19.1■□□□□ 0.65
CUX1-214ENST00000550008 PDE4AP27815 886 aa19.09■□□□□ 0.65
CUX1-214ENST00000550008 E9PSI1 815 aa19.09■□□□□ 0.65
CUX1-214ENST00000550008 NCLP19338 710 aaKnown RBP19.09■□□□□ 0.65
CUX1-214ENST00000550008 RWDD1Q9H446 243 aaPredicted RBP19.09■□□□□ 0.65
CUX1-214ENST00000550008 BRD4O60885 1362 aaPredicted RBP19.08■□□□□ 0.65
CUX1-214ENST00000550008 EID1Q9Y6B2 187 aa19.08■□□□□ 0.65
CUX1-214ENST00000550008 IPO9Q96P70 1041 aaKnown RBP19.08■□□□□ 0.64
CUX1-214ENST00000550008 DEKP35659 375 aaKnown RBP19.06■□□□□ 0.64
CUX1-214ENST00000550008 HMOX1P09601 288 aa19.06■□□□□ 0.64
CUX1-214ENST00000550008 SLC4A10Q6U841 1118 aa19.05■□□□□ 0.64
CUX1-214ENST00000550008 OS9Q13438 667 aaPredicted RBP19.05■□□□□ 0.64
CUX1-214ENST00000550008 AMPHP49418 695 aa19.05■□□□□ 0.64
CUX1-214ENST00000550008 MFAP1P55081 439 aaKnown RBP19.04■□□□□ 0.64
CUX1-214ENST00000550008 GPATCH8Q9UKJ3 1502 aaKnown RBP19.04■□□□□ 0.64
CUX1-214ENST00000550008 CCDC141Q6ZP82 1450 aa19.03■□□□□ 0.64
CUX1-214ENST00000550008 PANK1Q8TE04 598 aa19.03■□□□□ 0.64
CUX1-214ENST00000550008 NUP153P49790 1475 aaKnown RBP19.03■□□□□ 0.64
CUX1-214ENST00000550008 HSP90AB1P08238 724 aaKnown RBP19.03■□□□□ 0.64
CUX1-214ENST00000550008 RIPK4P57078 832 aa19.02■□□□□ 0.64
CUX1-214ENST00000550008 COG3Q96JB2 828 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms