RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 ABCC5O15440 1437 aa18.76■□□□□ 0.59
RAPGEF3-216ENST00000547856 DNMT1P26358 1616 aaKnown RBP18.76■□□□□ 0.59
RAPGEF3-216ENST00000547856 DHX29Q7Z478 1369 aaKnown RBP18.75■□□□□ 0.59
RAPGEF3-216ENST00000547856 HSP90AA1P07900 732 aaKnown RBP18.75■□□□□ 0.59
RAPGEF3-216ENST00000547856 TROQ12816 1431 aaPredicted RBP18.74■□□□□ 0.59
RAPGEF3-216ENST00000547856 CDCA7LQ96GN5 454 aa18.74■□□□□ 0.59
RAPGEF3-216ENST00000547856 MPHOSPH9Q99550 1183 aa18.74■□□□□ 0.59
RAPGEF3-216ENST00000547856 ZNF326Q5BKZ1 582 aaKnown RBP18.73■□□□□ 0.59
RAPGEF3-216ENST00000547856 PNNQ9H307 717 aaKnown RBP18.72■□□□□ 0.59
RAPGEF3-216ENST00000547856 ARID4BQ4LE39 1312 aaPredicted RBP18.72■□□□□ 0.59
RAPGEF3-216ENST00000547856 ROCK1Q13464 1354 aa18.72■□□□□ 0.59
RAPGEF3-216ENST00000547856 KIF14Q15058 1648 aa18.72■□□□□ 0.59
RAPGEF3-216ENST00000547856 CARMIL2Q6F5E8 1435 aa18.72■□□□□ 0.59
RAPGEF3-216ENST00000547856 RGS3P49796 1198 aa18.69■□□□□ 0.58
RAPGEF3-216ENST00000547856 GPATCH8Q9UKJ3 1502 aaKnown RBP18.69■□□□□ 0.58
RAPGEF3-216ENST00000547856 CFDP1Q9UEE9 299 aaPredicted RBP18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 ADCY10Q96PN6 1610 aa18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 CAMSAP2Q08AD1 1489 aa18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 FAM161AQ3B820 660 aa18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 C8orf34Q49A92 452 aa18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 C20orf194Q5TEA3 1177 aa18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 RRP9O43818 475 aaKnown RBP18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 SLKQ9H2G2 1235 aaPredicted RBP18.67■□□□□ 0.58
RAPGEF3-216ENST00000547856 ITSN2Q9NZM3 1697 aa18.66■□□□□ 0.58
RAPGEF3-216ENST00000547856 SPATA31E1Q6ZUB1 1445 aa18.65■□□□□ 0.58
RAPGEF3-216ENST00000547856 ABCA8O94911 1581 aa18.64■□□□□ 0.58
RAPGEF3-216ENST00000547856 ZNF777Q9ULD5 760 aaPredicted RBP18.64■□□□□ 0.57
RAPGEF3-216ENST00000547856 L1TD1Q5T7N2 865 aaKnown RBP18.63■□□□□ 0.57
RAPGEF3-216ENST00000547856 ANKRD30BQ9BXX2 1392 aa18.62■□□□□ 0.57
RAPGEF3-216ENST00000547856 PANK2Q9BZ23 570 aa18.62■□□□□ 0.57
RAPGEF3-216ENST00000547856 GZF1Q9H116 711 aaPredicted RBP18.61■□□□□ 0.57
RAPGEF3-216ENST00000547856 ATP10BO94823 1461 aa18.61■□□□□ 0.57
RAPGEF3-216ENST00000547856 CDC42BPAQ5VT25 1732 aa18.59■□□□□ 0.57
RAPGEF3-216ENST00000547856 XRCC6P12956 609 aaKnown RBP eCLIP18.59■□□□□ 0.57
RAPGEF3-216ENST00000547856 SLC4A1APQ9BWU0 796 aaKnown RBP18.59■□□□□ 0.57
RAPGEF3-216ENST00000547856 ADGBQ8N7X0 1667 aa18.59■□□□□ 0.57
RAPGEF3-216ENST00000547856 CROCC2H7BZ55 1655 aa18.58■□□□□ 0.57
RAPGEF3-216ENST00000547856 PLEKHD1A6NEE1 506 aa18.58■□□□□ 0.56
RAPGEF3-216ENST00000547856 RPRD2Q5VT52 1461 aaKnown RBP18.58■□□□□ 0.56
RAPGEF3-216ENST00000547856 LRPPRCP42704 1394 aaKnown RBP18.58■□□□□ 0.56
RAPGEF3-216ENST00000547856 KTN1Q86UP2 1357 aaKnown RBP18.57■□□□□ 0.56
RAPGEF3-216ENST00000547856 CLCN1P35523 988 aa18.57■□□□□ 0.56
RAPGEF3-216ENST00000547856 PZPP20742 1482 aa18.56■□□□□ 0.56
RAPGEF3-216ENST00000547856 ABCC10Q5T3U5 1492 aa18.56■□□□□ 0.56
RAPGEF3-216ENST00000547856 KDM2BQ8NHM5 1336 aa18.56■□□□□ 0.56
RAPGEF3-216ENST00000547856 ADGRL2O95490 1459 aa18.55■□□□□ 0.56
RAPGEF3-216ENST00000547856 CENPQQ7L2Z9 268 aaPredicted RBP18.55■□□□□ 0.56
RAPGEF3-216ENST00000547856 USP47Q96K76 1375 aa18.55■□□□□ 0.56
RAPGEF3-216ENST00000547856 MYBBP1AQ9BQG0 1328 aaKnown RBP18.54■□□□□ 0.56
RAPGEF3-216ENST00000547856 GOLGA6L3A6NEY3 463 aa18.54■□□□□ 0.56
RAPGEF3-216ENST00000547856 TEX14Q8IWB6 1497 aa18.54■□□□□ 0.56
RAPGEF3-216ENST00000547856 A0A0U1RQG5 324 aaPredicted RBP18.53■□□□□ 0.56
RAPGEF3-216ENST00000547856 PDE3BQ13370 1112 aa18.53■□□□□ 0.56
RAPGEF3-216ENST00000547856 CHD1O14646 1710 aa18.53■□□□□ 0.56
RAPGEF3-216ENST00000547856 PTPRGP23470 1445 aa18.51■□□□□ 0.55
RAPGEF3-216ENST00000547856 SPRYD3Q8NCJ5 442 aa18.51■□□□□ 0.55
RAPGEF3-216ENST00000547856 BRD4O60885 1362 aaPredicted RBP18.51■□□□□ 0.55
RAPGEF3-216ENST00000547856 ANKRD30AQ9BXX3 1397 aa18.5■□□□□ 0.55
RAPGEF3-216ENST00000547856 KIF15Q9NS87 1388 aa18.5■□□□□ 0.55
RAPGEF3-216ENST00000547856 SEC24BO95487 1268 aa18.48■□□□□ 0.55
RAPGEF3-216ENST00000547856 BCORL1Q5H9F3 1711 aa18.47■□□□□ 0.55
RAPGEF3-216ENST00000547856 ANKRD50Q9ULJ7 1429 aa18.47■□□□□ 0.55
RAPGEF3-216ENST00000547856 RALBP1Q15311 655 aa18.46■□□□□ 0.55
RAPGEF3-216ENST00000547856 C9orf84Q5VXU9 1444 aa18.45■□□□□ 0.54
RAPGEF3-216ENST00000547856 BECN1Q14457 450 aa18.45■□□□□ 0.54
RAPGEF3-216ENST00000547856 PKD2Q13563 968 aa18.45■□□□□ 0.54
RAPGEF3-216ENST00000547856 KIAA1107Q9UPP5 1409 aa18.44■□□□□ 0.54
RAPGEF3-216ENST00000547856 USP19O94966 1318 aa18.44■□□□□ 0.54
RAPGEF3-216ENST00000547856 HNRNPMP52272 730 aaKnown RBP eCLIP18.44■□□□□ 0.54
RAPGEF3-216ENST00000547856 SHANK2Q9UPX8 1470 aa18.44■□□□□ 0.54
RAPGEF3-216ENST00000547856 POLR1AO95602 1720 aaPredicted RBP18.43■□□□□ 0.54
RAPGEF3-216ENST00000547856 CDC42BPBQ9Y5S2 1711 aa18.43■□□□□ 0.54
RAPGEF3-216ENST00000547856 ERBB4Q15303 1308 aa18.42■□□□□ 0.54
RAPGEF3-216ENST00000547856 NLRP13Q86W25 1043 aa18.42■□□□□ 0.54
RAPGEF3-216ENST00000547856 SHROOM2Q13796 1616 aa18.41■□□□□ 0.54
RAPGEF3-216ENST00000547856 FSD2A1L4K1 749 aa18.41■□□□□ 0.54
RAPGEF3-216ENST00000547856 ESPNB1AK53 854 aa18.41■□□□□ 0.54
RAPGEF3-216ENST00000547856 RBM10P98175 930 aaKnown RBP18.41■□□□□ 0.54
RAPGEF3-216ENST00000547856 CARD11Q9BXL7 1154 aa18.41■□□□□ 0.54
RAPGEF3-216ENST00000547856 MBD5Q9P267 1494 aa18.4■□□□□ 0.54
RAPGEF3-216ENST00000547856 TSPY4P0CV99 314 aa18.4■□□□□ 0.54
RAPGEF3-216ENST00000547856 TSPY10P0CW01 314 aa18.4■□□□□ 0.54
RAPGEF3-216ENST00000547856 ERCC6L2Q5T890 1561 aa18.4■□□□□ 0.54
RAPGEF3-216ENST00000547856 ST20-MTHFSA0A0A6YYL1 179 aa18.4■□□□□ 0.54
RAPGEF3-216ENST00000547856 CC2D1BQ5T0F9 858 aaKnown RBP18.39■□□□□ 0.54
RAPGEF3-216ENST00000547856 SAMD9LQ8IVG5 1584 aa18.39■□□□□ 0.54
RAPGEF3-216ENST00000547856 NUP155O75694 1391 aa18.39■□□□□ 0.53
RAPGEF3-216ENST00000547856 MYH16Q9H6N6 1097 aa18.38■□□□□ 0.53
RAPGEF3-216ENST00000547856 ANTXR1Q9H6X2 564 aa18.38■□□□□ 0.53
RAPGEF3-216ENST00000547856 ARHGEF5Q12774 1597 aa18.38■□□□□ 0.53
RAPGEF3-216ENST00000547856 PREX2Q70Z35 1606 aa18.38■□□□□ 0.53
RAPGEF3-216ENST00000547856 ROCK2O75116 1388 aaKnown RBP18.37■□□□□ 0.53
RAPGEF3-216ENST00000547856 PDCL3Q9H2J4 239 aa18.36■□□□□ 0.53
RAPGEF3-216ENST00000547856 KDM2AQ9Y2K7 1162 aa18.36■□□□□ 0.53
RAPGEF3-216ENST00000547856 MCM4P33991 863 aa18.35■□□□□ 0.53
RAPGEF3-216ENST00000547856 TRIM44Q96DX7 344 aaPredicted RBP18.35■□□□□ 0.53
RAPGEF3-216ENST00000547856 TTC37Q6PGP7 1564 aa18.34■□□□□ 0.53
RAPGEF3-216ENST00000547856 TRAK2O60296 914 aa18.34■□□□□ 0.53
RAPGEF3-216ENST00000547856 IGHDP01880 384 aa18.34■□□□□ 0.53
RAPGEF3-216ENST00000547856 MRE11P49959 708 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms