RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CFAP43Q8NDM7 1665 aa13.38□□□□□ -0.27
VPS29-203ENST00000546588 MAP3K1Q13233 1512 aa13.38□□□□□ -0.27
VPS29-203ENST00000546588 POTEB3A0JP26 581 aa13.37□□□□□ -0.27
VPS29-203ENST00000546588 MMRN1Q13201 1228 aa13.37□□□□□ -0.27
VPS29-203ENST00000546588 POTEBQ6S5H4 581 aa13.37□□□□□ -0.27
VPS29-203ENST00000546588 DISP1Q96F81 1524 aa13.35□□□□□ -0.27
VPS29-203ENST00000546588 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
VPS29-203ENST00000546588 EMP3P54852 163 aa13.35□□□□□ -0.27
VPS29-203ENST00000546588 TSHZ2Q9NRE2 1034 aa13.35□□□□□ -0.27
VPS29-203ENST00000546588 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
VPS29-203ENST00000546588 PCF11O94913 1555 aaKnown RBP13.33□□□□□ -0.28
VPS29-203ENST00000546588 FYCO1Q9BQS8 1478 aa13.33□□□□□ -0.28
VPS29-203ENST00000546588 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
VPS29-203ENST00000546588 HS3ST6Q96QI5 342 aa13.32□□□□□ -0.28
VPS29-203ENST00000546588 FMN1Q68DA7 1419 aa13.3□□□□□ -0.28
VPS29-203ENST00000546588 KRTAP3-3Q9BYR6 98 aa13.3□□□□□ -0.28
VPS29-203ENST00000546588 KRTAP3-2Q9BYR7 98 aa13.3□□□□□ -0.28
VPS29-203ENST00000546588 TPRNQ4KMQ1 711 aa13.29□□□□□ -0.28
VPS29-203ENST00000546588 TIAM1Q13009 1591 aa13.28□□□□□ -0.28
VPS29-203ENST00000546588 CASKIN1Q8WXD9 1431 aa13.28□□□□□ -0.28
VPS29-203ENST00000546588 HECW1Q76N89 1606 aa13.28□□□□□ -0.28
VPS29-203ENST00000546588 FAM205CA6NFA0 338 aa13.27□□□□□ -0.29
VPS29-203ENST00000546588 G3V3G9 751 aa13.27□□□□□ -0.29
VPS29-203ENST00000546588 CHMP7Q8WUX9 453 aaPredicted RBP13.27□□□□□ -0.29
VPS29-203ENST00000546588 RNF25Q96BH1 459 aaPredicted RBP13.27□□□□□ -0.29
VPS29-203ENST00000546588 FHOD3Q2V2M9 1422 aa13.26□□□□□ -0.29
VPS29-203ENST00000546588 TTBK1Q5TCY1 1321 aaPredicted RBP13.26□□□□□ -0.29
VPS29-203ENST00000546588 HOXB1P14653 301 aaPredicted RBP13.24□□□□□ -0.29
VPS29-203ENST00000546588 RAPGEF6Q8TEU7 1601 aa13.24□□□□□ -0.29
VPS29-203ENST00000546588 RIOK3O14730 519 aaKnown RBP13.22□□□□□ -0.29
VPS29-203ENST00000546588 ABCA8O94911 1581 aa13.21□□□□□ -0.29
VPS29-203ENST00000546588 SOX12O15370 315 aa13.21□□□□□ -0.29
VPS29-203ENST00000546588 CCDC18Q5T9S5 1454 aa13.21□□□□□ -0.3
VPS29-203ENST00000546588 CARMIL2Q6F5E8 1435 aa13.21□□□□□ -0.3
VPS29-203ENST00000546588 MS4A4AQ96JQ5 239 aa13.2□□□□□ -0.3
VPS29-203ENST00000546588 TMEM92Q6UXU6 159 aa13.19□□□□□ -0.3
VPS29-203ENST00000546588 MICALL2Q8IY33 904 aa13.19□□□□□ -0.3
VPS29-203ENST00000546588 HS6ST3Q8IZP7 471 aa13.19□□□□□ -0.3
VPS29-203ENST00000546588 DOK7Q18PE1 504 aa13.18□□□□□ -0.3
VPS29-203ENST00000546588 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.17□□□□□ -0.3
VPS29-203ENST00000546588 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
VPS29-203ENST00000546588 VGFO15240 615 aaPredicted RBP13.16□□□□□ -0.3
VPS29-203ENST00000546588 ADCY10Q96PN6 1610 aa13.15□□□□□ -0.3
VPS29-203ENST00000546588 JPH4Q96JJ6 628 aa13.15□□□□□ -0.3
VPS29-203ENST00000546588 LRRC9Q6ZRR7 1453 aa13.15□□□□□ -0.3
VPS29-203ENST00000546588 PRG4Q92954 1404 aaPredicted RBP13.14□□□□□ -0.31
VPS29-203ENST00000546588 EHBP1L1Q8N3D4 1523 aa13.14□□□□□ -0.31
VPS29-203ENST00000546588 ZNF710Q8N1W2 664 aa13.14□□□□□ -0.31
VPS29-203ENST00000546588 NUP153P49790 1475 aaKnown RBP13.14□□□□□ -0.31
VPS29-203ENST00000546588 ERCC6L2Q5T890 1561 aa13.14□□□□□ -0.31
VPS29-203ENST00000546588 ARHGEF11O15085 1522 aa13.13□□□□□ -0.31
VPS29-203ENST00000546588 EPRSP07814 1512 aaKnown RBP13.13□□□□□ -0.31
VPS29-203ENST00000546588 PHF8Q9UPP1 1060 aa13.12□□□□□ -0.31
VPS29-203ENST00000546588 SUPT6HQ7KZ85 1726 aaKnown RBP13.11□□□□□ -0.31
VPS29-203ENST00000546588 NBR1Q14596 966 aa13.11□□□□□ -0.31
VPS29-203ENST00000546588 UHRF1BP1LA0JNW5 1464 aa13.1□□□□□ -0.31
VPS29-203ENST00000546588 MAGI3Q5TCQ9 1506 aa13.09□□□□□ -0.31
VPS29-203ENST00000546588 ABCC2Q92887 1545 aa13.09□□□□□ -0.31
VPS29-203ENST00000546588 ZSWIM6Q9HCJ5 1215 aa13.09□□□□□ -0.31
VPS29-203ENST00000546588 RIMBP2O15034 1052 aa13.07□□□□□ -0.32
VPS29-203ENST00000546588 PLB1Q6P1J6 1458 aa13.07□□□□□ -0.32
VPS29-203ENST00000546588 ERBB3P21860 1342 aa13.07□□□□□ -0.32
VPS29-203ENST00000546588 GPR153Q6NV75 609 aa13.06□□□□□ -0.32
VPS29-203ENST00000546588 RRBP1Q9P2E9 1410 aaKnown RBP13.05□□□□□ -0.32
VPS29-203ENST00000546588 CDK13Q14004 1512 aaKnown RBP13.05□□□□□ -0.32
VPS29-203ENST00000546588 RANGAP1P46060 587 aaPredicted RBP13.05□□□□□ -0.32
VPS29-203ENST00000546588 STK25O00506 426 aa13.04□□□□□ -0.32
VPS29-203ENST00000546588 FBXO22Q8NEZ5 403 aa13.04□□□□□ -0.32
VPS29-203ENST00000546588 TRIM26Q12899 539 aaPredicted RBP13.03□□□□□ -0.32
VPS29-203ENST00000546588 PTPRGP23470 1445 aa13.03□□□□□ -0.32
VPS29-203ENST00000546588 UACAQ9BZF9 1416 aa13.03□□□□□ -0.32
VPS29-203ENST00000546588 KDM5BQ9UGL1 1544 aa13.03□□□□□ -0.32
VPS29-203ENST00000546588 ZCCHC11Q5TAX3 1644 aaKnown RBP13.02□□□□□ -0.32
VPS29-203ENST00000546588 ITSN2Q9NZM3 1697 aa13.02□□□□□ -0.32
VPS29-203ENST00000546588 NKX1-1Q15270 411 aaPredicted RBP13.02□□□□□ -0.33
VPS29-203ENST00000546588 P3H3Q8IVL6 736 aa13.02□□□□□ -0.33
VPS29-203ENST00000546588 VARS2Q5ST30 1063 aaKnown RBP13.01□□□□□ -0.33
VPS29-203ENST00000546588 NLRP6P59044 892 aa13□□□□□ -0.33
VPS29-203ENST00000546588 KANK4Q5T7N3 995 aaPredicted RBP13□□□□□ -0.33
VPS29-203ENST00000546588 ATP10BO94823 1461 aa12.99□□□□□ -0.33
VPS29-203ENST00000546588 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS29-203ENST00000546588 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
VPS29-203ENST00000546588 CDC42BPAQ5VT25 1732 aa12.99□□□□□ -0.33
VPS29-203ENST00000546588 ZNF687Q8N1G0 1237 aa12.98□□□□□ -0.33
VPS29-203ENST00000546588 BCL11BQ9C0K0 894 aaPredicted RBP12.98□□□□□ -0.33
VPS29-203ENST00000546588 KIF14Q15058 1648 aa12.98□□□□□ -0.33
VPS29-203ENST00000546588 NCOA2Q15596 1464 aa12.97□□□□□ -0.33
VPS29-203ENST00000546588 TROQ12816 1431 aaPredicted RBP12.97□□□□□ -0.33
VPS29-203ENST00000546588 RIMBP3CA6NJZ7 1639 aa12.96□□□□□ -0.33
VPS29-203ENST00000546588 RIMBP3BA6NNM3 1639 aa12.96□□□□□ -0.33
VPS29-203ENST00000546588 RIMBP3Q9UFD9 1639 aa12.96□□□□□ -0.33
VPS29-203ENST00000546588 GTPBP6O43824 516 aaPredicted RBP12.96□□□□□ -0.33
VPS29-203ENST00000546588 MFRPQ9BY79 579 aa12.96□□□□□ -0.33
VPS29-203ENST00000546588 TCOF1Q13428 1488 aaKnown RBP12.95□□□□□ -0.34
VPS29-203ENST00000546588 PHLDB1Q86UU1 1377 aa12.94□□□□□ -0.34
VPS29-203ENST00000546588 ABCC10Q5T3U5 1492 aa12.94□□□□□ -0.34
VPS29-203ENST00000546588 PREX2Q70Z35 1606 aa12.94□□□□□ -0.34
VPS29-203ENST00000546588 MYOM3Q5VTT5 1437 aa12.94□□□□□ -0.34
VPS29-203ENST00000546588 MTUS2Q5JR59 1369 aa12.94□□□□□ -0.34
VPS29-203ENST00000546588 KIF3CO14782 793 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms