RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-224ENST00000545688 NBR1Q14596 966 aa13□□□□□ -0.33
SNHG1-224ENST00000545688 HRO43593 1189 aa12.99□□□□□ -0.33
SNHG1-224ENST00000545688 RBM33Q96EV2 1170 aaKnown RBP12.99□□□□□ -0.33
SNHG1-224ENST00000545688 VPS9D1Q9Y2B5 631 aa12.99□□□□□ -0.33
SNHG1-224ENST00000545688 ARHGEF1Q92888 912 aaKnown RBP12.98□□□□□ -0.33
SNHG1-224ENST00000545688 ZBED2Q9BTP6 218 aa12.98□□□□□ -0.33
SNHG1-224ENST00000545688 GRXCR2A6NFK2 248 aa12.96□□□□□ -0.33
SNHG1-224ENST00000545688 PPP1R3GB7ZBB8 358 aa12.96□□□□□ -0.33
SNHG1-224ENST00000545688 COL9A1P20849 921 aa12.96□□□□□ -0.33
SNHG1-224ENST00000545688 SLC4A5Q9BY07 1137 aa12.96□□□□□ -0.33
SNHG1-224ENST00000545688 C6orf132Q5T0Z8 1188 aa12.95□□□□□ -0.34
SNHG1-224ENST00000545688 EN1Q05925 392 aaPredicted RBP12.94□□□□□ -0.34
SNHG1-224ENST00000545688 PRIM1P49642 420 aaKnown RBP12.93□□□□□ -0.34
SNHG1-224ENST00000545688 P3H3Q8IVL6 736 aa12.93□□□□□ -0.34
SNHG1-224ENST00000545688 MAP3K7O43318 606 aa12.91□□□□□ -0.34
SNHG1-224ENST00000545688 TSR1Q2NL82 804 aaKnown RBP12.9□□□□□ -0.34
SNHG1-224ENST00000545688 PROX2Q3B8N5 592 aa12.9□□□□□ -0.34
SNHG1-224ENST00000545688 KDM2AQ9Y2K7 1162 aa12.9□□□□□ -0.34
SNHG1-224ENST00000545688 STAC3Q96MF2 364 aa12.89□□□□□ -0.35
SNHG1-224ENST00000545688 BHMG1C9JSJ3 638 aaPredicted RBP12.88□□□□□ -0.35
SNHG1-224ENST00000545688 OSBPP22059 807 aa12.88□□□□□ -0.35
SNHG1-224ENST00000545688 MLLT3P42568 568 aaPredicted RBP12.86□□□□□ -0.35
SNHG1-224ENST00000545688 RABGEF1Q9UJ41 708 aa12.83□□□□□ -0.36
SNHG1-224ENST00000545688 KCTD12Q96CX2 325 aaKnown RBP12.82□□□□□ -0.36
SNHG1-224ENST00000545688 CDHR5Q9HBB8 845 aa12.82□□□□□ -0.36
SNHG1-224ENST00000545688 MRPL50Q8N5N7 158 aaKnown RBP12.81□□□□□ -0.36
SNHG1-224ENST00000545688 NBPF3Q9H094 633 aa12.81□□□□□ -0.36
SNHG1-224ENST00000545688 TRIM6-TRIM34B2RNG4 842 aa12.8□□□□□ -0.36
SNHG1-224ENST00000545688 SEMA3EO15041 775 aa12.79□□□□□ -0.36
SNHG1-224ENST00000545688 VSIG10Q8N0Z9 540 aa12.79□□□□□ -0.36
SNHG1-224ENST00000545688 KIAA1468Q9P260 1216 aa12.79□□□□□ -0.36
SNHG1-224ENST00000545688 ONECUT3O60422 494 aaPredicted RBP12.78□□□□□ -0.36
SNHG1-224ENST00000545688 TSKSQ9UJT2 592 aa12.77□□□□□ -0.37
SNHG1-224ENST00000545688 GOLGA8CPA6NN73 597 aa12.76□□□□□ -0.37
SNHG1-224ENST00000545688 CERKQ8TCT0 537 aa12.75□□□□□ -0.37
SNHG1-224ENST00000545688 CDCA7LQ96GN5 454 aa12.74□□□□□ -0.37
SNHG1-224ENST00000545688 HCSTQ9UBK5 93 aa12.74□□□□□ -0.37
SNHG1-224ENST00000545688 SEPT9Q9UHD8 586 aaPredicted RBP12.74□□□□□ -0.37
SNHG1-224ENST00000545688 PRSS12P56730 875 aa12.73□□□□□ -0.37
SNHG1-224ENST00000545688 WNT2BQ93097 391 aa12.73□□□□□ -0.37
SNHG1-224ENST00000545688 NPDC1Q9NQX5 325 aaPredicted RBP12.72□□□□□ -0.37
SNHG1-224ENST00000545688 FAM198AQ9UFP1 575 aa12.72□□□□□ -0.37
SNHG1-224ENST00000545688 LAPTM4BQ86VI4 370 aa12.71□□□□□ -0.37
SNHG1-224ENST00000545688 THSD4Q6ZMP0 1018 aa12.7□□□□□ -0.38
SNHG1-224ENST00000545688 PACS2Q86VP3 889 aa12.7□□□□□ -0.38
SNHG1-224ENST00000545688 TESPA1A2RU30 521 aaPredicted RBP12.69□□□□□ -0.38
SNHG1-224ENST00000545688 PTPN5P54829 565 aa12.68□□□□□ -0.38
SNHG1-224ENST00000545688 ZFRQ96KR1 1074 aaKnown RBP12.67□□□□□ -0.38
SNHG1-224ENST00000545688 C3orf80F5H4A9 247 aa12.66□□□□□ -0.38
SNHG1-224ENST00000545688 FAM98CQ17RN3 349 aaKnown RBP12.66□□□□□ -0.38
SNHG1-224ENST00000545688 ANKK1Q8NFD2 765 aa12.66□□□□□ -0.38
SNHG1-224ENST00000545688 RBM27Q9P2N5 1060 aaKnown RBP12.66□□□□□ -0.38
SNHG1-224ENST00000545688 SMAPO00193 183 aa12.65□□□□□ -0.38
SNHG1-224ENST00000545688 PADI6Q6TGC4 694 aa12.65□□□□□ -0.38
SNHG1-224ENST00000545688 NUTM2FA1L443 756 aa12.64□□□□□ -0.39
SNHG1-224ENST00000545688 NBPF26B4DH59 902 aa12.63□□□□□ -0.39
SNHG1-224ENST00000545688 BCAMP50895 628 aa12.63□□□□□ -0.39
SNHG1-224ENST00000545688 PTGDRQ13258 359 aa12.63□□□□□ -0.39
SNHG1-224ENST00000545688 TTC13Q8NBP0 860 aa12.63□□□□□ -0.39
SNHG1-224ENST00000545688 TATDN2Q93075 761 aa12.63□□□□□ -0.39
SNHG1-224ENST00000545688 PNMA3Q9UL41 463 aa12.62□□□□□ -0.39
SNHG1-224ENST00000545688 SOWAHBA6NEL2 793 aa12.6□□□□□ -0.39
SNHG1-224ENST00000545688 RBM26Q5T8P6 1007 aaKnown RBP12.6□□□□□ -0.39
SNHG1-224ENST00000545688 SMYD5Q6GMV2 418 aa12.6□□□□□ -0.39
SNHG1-224ENST00000545688 NUDT18Q6ZVK8 323 aa12.6□□□□□ -0.39
SNHG1-224ENST00000545688 LRCH3Q96II8 777 aa12.56□□□□□ -0.4
SNHG1-224ENST00000545688 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.56□□□□□ -0.4
SNHG1-224ENST00000545688 FCHSD2O94868 740 aa12.55□□□□□ -0.4
SNHG1-224ENST00000545688 PLA2G2EQ9NZK7 142 aa12.54□□□□□ -0.4
SNHG1-224ENST00000545688 SAMD7Q7Z3H4 446 aa12.53□□□□□ -0.4
SNHG1-224ENST00000545688 WBP1LQ9NX94 342 aa12.52□□□□□ -0.41
SNHG1-224ENST00000545688 HPS5Q9UPZ3 1129 aa12.52□□□□□ -0.41
SNHG1-224ENST00000545688 EYA1Q99502 592 aa12.5□□□□□ -0.41
SNHG1-224ENST00000545688 GPR37O15354 613 aa12.49□□□□□ -0.41
SNHG1-224ENST00000545688 TSR3Q9UJK0 312 aaKnown RBP12.49□□□□□ -0.41
SNHG1-224ENST00000545688 HIC1Q14526 733 aa12.48□□□□□ -0.41
SNHG1-224ENST00000545688 FAM161AQ3B820 660 aa12.48□□□□□ -0.41
SNHG1-224ENST00000545688 ADGRG1Q9Y653 693 aa12.48□□□□□ -0.41
SNHG1-224ENST00000545688 SWT1Q5T5J6 900 aaKnown RBP12.45□□□□□ -0.42
SNHG1-224ENST00000545688 GPIHBP1Q8IV16 184 aa12.45□□□□□ -0.42
SNHG1-224ENST00000545688 RNF40O75150 1001 aa12.44□□□□□ -0.42
SNHG1-224ENST00000545688 FECHP22830 423 aa12.44□□□□□ -0.42
SNHG1-224ENST00000545688 HDGFP51858 240 aaKnown RBP12.44□□□□□ -0.42
SNHG1-224ENST00000545688 PPP4CP60510 307 aa12.44□□□□□ -0.42
SNHG1-224ENST00000545688 NYAP1Q6ZVC0 841 aa12.44□□□□□ -0.42
SNHG1-224ENST00000545688 RBM46Q8TBY0 533 aaKnown RBP12.44□□□□□ -0.42
SNHG1-224ENST00000545688 GNPATO15228 680 aa12.43□□□□□ -0.42
SNHG1-224ENST00000545688 TULP1O00294 542 aaPredicted RBP12.41□□□□□ -0.42
SNHG1-224ENST00000545688 DNAJB2P25686 324 aa12.4□□□□□ -0.42
SNHG1-224ENST00000545688 RCCD1A6NED2 376 aa12.38□□□□□ -0.43
SNHG1-224ENST00000545688 ITGBL1O95965 494 aaPredicted RBP12.37□□□□□ -0.43
SNHG1-224ENST00000545688 SLF2Q8IX21 1173 aa12.37□□□□□ -0.43
SNHG1-224ENST00000545688 PXYLP1Q8TE99 480 aa12.37□□□□□ -0.43
SNHG1-224ENST00000545688 TMEM134Q9H6X4 195 aa12.37□□□□□ -0.43
SNHG1-224ENST00000545688 IFFO2Q5TF58 517 aa12.36□□□□□ -0.43
SNHG1-224ENST00000545688 OATP04181 439 aa12.35□□□□□ -0.43
SNHG1-224ENST00000545688 METTL3Q86U44 580 aaKnown RBP12.35□□□□□ -0.43
SNHG1-224ENST00000545688 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.33□□□□□ -0.44
SNHG1-224ENST00000545688 SLC4A3P48751 1232 aa12.33□□□□□ -0.44
SNHG1-224ENST00000545688 APLP1P51693 650 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms