RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NUP155O75694 1391 aa18.54■□□□□ 0.56
VPS33A-208ENST00000543633 PNISRQ8TF01 805 aaKnown RBP18.54■□□□□ 0.56
VPS33A-208ENST00000543633 TRPM1Q7Z4N2 1603 aa18.54■□□□□ 0.56
VPS33A-208ENST00000543633 PREX2Q70Z35 1606 aa18.53■□□□□ 0.56
VPS33A-208ENST00000543633 ZMYM4Q5VZL5 1548 aa18.52■□□□□ 0.56
VPS33A-208ENST00000543633 RALBP1Q15311 655 aa18.52■□□□□ 0.55
VPS33A-208ENST00000543633 MAST1Q9Y2H9 1570 aa18.52■□□□□ 0.55
VPS33A-208ENST00000543633 MYBBP1AQ9BQG0 1328 aaKnown RBP18.51■□□□□ 0.55
VPS33A-208ENST00000543633 UNC13BO14795 1591 aa18.51■□□□□ 0.55
VPS33A-208ENST00000543633 INSRP06213 1382 aa18.5■□□□□ 0.55
VPS33A-208ENST00000543633 CCDC141Q6ZP82 1450 aa18.5■□□□□ 0.55
VPS33A-208ENST00000543633 CARD11Q9BXL7 1154 aa18.49■□□□□ 0.55
VPS33A-208ENST00000543633 ZNF777Q9ULD5 760 aaPredicted RBP18.49■□□□□ 0.55
VPS33A-208ENST00000543633 FAM135AQ9P2D6 1515 aa18.49■□□□□ 0.55
VPS33A-208ENST00000543633 TMC1Q8TDI8 760 aa18.48■□□□□ 0.55
VPS33A-208ENST00000543633 SAMD9LQ8IVG5 1584 aa18.47■□□□□ 0.55
VPS33A-208ENST00000543633 ZNF326Q5BKZ1 582 aaKnown RBP18.47■□□□□ 0.55
VPS33A-208ENST00000543633 EIF2AK4Q9P2K8 1649 aaKnown RBP18.47■□□□□ 0.55
VPS33A-208ENST00000543633 CDC42BPBQ9Y5S2 1711 aa18.46■□□□□ 0.55
VPS33A-208ENST00000543633 TSPY4P0CV99 314 aa18.46■□□□□ 0.55
VPS33A-208ENST00000543633 TSPY10P0CW01 314 aa18.46■□□□□ 0.55
VPS33A-208ENST00000543633 CCDC136Q96JN2 1154 aa18.45■□□□□ 0.54
VPS33A-208ENST00000543633 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.45■□□□□ 0.54
VPS33A-208ENST00000543633 PRAG1Q86YV5 1406 aa18.45■□□□□ 0.54
VPS33A-208ENST00000543633 GPRASP1Q5JY77 1395 aa18.45■□□□□ 0.54
VPS33A-208ENST00000543633 RSPH4AQ5TD94 716 aa18.44■□□□□ 0.54
VPS33A-208ENST00000543633 PLXNC1O60486 1568 aa18.44■□□□□ 0.54
VPS33A-208ENST00000543633 PARD3Q8TEW0 1356 aa18.44■□□□□ 0.54
VPS33A-208ENST00000543633 TTC37Q6PGP7 1564 aa18.44■□□□□ 0.54
VPS33A-208ENST00000543633 PRDM15P57071 1507 aaPredicted RBP18.43■□□□□ 0.54
VPS33A-208ENST00000543633 NOP58Q9Y2X3 529 aaKnown RBP18.43■□□□□ 0.54
VPS33A-208ENST00000543633 IQGAP3Q86VI3 1631 aa18.43■□□□□ 0.54
VPS33A-208ENST00000543633 PDE3BQ13370 1112 aa18.42■□□□□ 0.54
VPS33A-208ENST00000543633 POLR3GLQ9BT43 218 aa18.42■□□□□ 0.54
VPS33A-208ENST00000543633 WASHC2CQ9Y4E1 1318 aa18.41■□□□□ 0.54
VPS33A-208ENST00000543633 COL17A1Q9UMD9 1497 aaPredicted RBP18.41■□□□□ 0.54
VPS33A-208ENST00000543633 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 ST20-MTHFSA0A0A6YYL1 179 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 MYO5CQ9NQX4 1742 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 WDR7Q9Y4E6 1490 aa18.4■□□□□ 0.54
VPS33A-208ENST00000543633 CCDC144AA2RUR9 1427 aa18.39■□□□□ 0.54
VPS33A-208ENST00000543633 NLRP13Q86W25 1043 aa18.39■□□□□ 0.53
VPS33A-208ENST00000543633 PLEKHH2Q8IVE3 1493 aa18.39■□□□□ 0.53
VPS33A-208ENST00000543633 RNF17Q9BXT8 1623 aaKnown RBP18.38■□□□□ 0.53
VPS33A-208ENST00000543633 ATP10AO60312 1499 aa18.37■□□□□ 0.53
VPS33A-208ENST00000543633 ANP32AP39687 249 aaKnown RBP18.37■□□□□ 0.53
VPS33A-208ENST00000543633 MAGI2Q86UL8 1455 aa18.36■□□□□ 0.53
VPS33A-208ENST00000543633 RRP1P56182 461 aaKnown RBP18.36■□□□□ 0.53
VPS33A-208ENST00000543633 DCAF11Q8TEB1 546 aa18.36■□□□□ 0.53
VPS33A-208ENST00000543633 ASXL2Q76L83 1435 aa18.36■□□□□ 0.53
VPS33A-208ENST00000543633 A2MP01023 1474 aa18.35■□□□□ 0.53
VPS33A-208ENST00000543633 BLMP54132 1417 aaPredicted RBP18.34■□□□□ 0.53
VPS33A-208ENST00000543633 SYCP2Q9BX26 1530 aa18.33■□□□□ 0.53
VPS33A-208ENST00000543633 IPO9Q96P70 1041 aaKnown RBP18.33■□□□□ 0.53
VPS33A-208ENST00000543633 PLCH2O75038 1416 aa18.32■□□□□ 0.52
VPS33A-208ENST00000543633 PLA2R1Q13018 1463 aa18.31■□□□□ 0.52
VPS33A-208ENST00000543633 DUOX2Q9NRD8 1548 aa18.31■□□□□ 0.52
VPS33A-208ENST00000543633 HNRNPMP52272 730 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS33A-208ENST00000543633 ARHGAP5Q13017 1502 aa18.3■□□□□ 0.52
VPS33A-208ENST00000543633 ABCA9Q8IUA7 1624 aa18.3■□□□□ 0.52
VPS33A-208ENST00000543633 KDM2AQ9Y2K7 1162 aa18.3■□□□□ 0.52
VPS33A-208ENST00000543633 TCERG1O14776 1098 aaKnown RBP18.3■□□□□ 0.52
VPS33A-208ENST00000543633 NPM1P06748 294 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS33A-208ENST00000543633 CYB5RLQ6IPT4 315 aa18.3■□□□□ 0.52
VPS33A-208ENST00000543633 RCAN3Q9UKA8 241 aa18.3■□□□□ 0.52
VPS33A-208ENST00000543633 PER1O15534 1290 aaPredicted RBP18.28■□□□□ 0.52
VPS33A-208ENST00000543633 ARAP3Q8WWN8 1544 aa18.28■□□□□ 0.52
VPS33A-208ENST00000543633 ERBINQ96RT1 1412 aa18.28■□□□□ 0.52
VPS33A-208ENST00000543633 MS4A1P11836 297 aa18.27■□□□□ 0.52
VPS33A-208ENST00000543633 CNGB1Q14028 1251 aaPredicted RBP18.25■□□□□ 0.51
VPS33A-208ENST00000543633 IQGAP1P46940 1657 aa18.25■□□□□ 0.51
VPS33A-208ENST00000543633 PAK3O75914 559 aaPredicted RBP18.23■□□□□ 0.51
VPS33A-208ENST00000543633 DEKP35659 375 aaKnown RBP18.23■□□□□ 0.51
VPS33A-208ENST00000543633 TESK2Q96S53 571 aa18.23■□□□□ 0.51
VPS33A-208ENST00000543633 ZBTB47Q9UFB7 747 aaPredicted RBP18.23■□□□□ 0.51
VPS33A-208ENST00000543633 EFCAB2Q5VUJ9 269 aa18.22■□□□□ 0.51
VPS33A-208ENST00000543633 DISP3Q9P2K9 1392 aa18.22■□□□□ 0.51
VPS33A-208ENST00000543633 MADDQ8WXG6 1647 aa18.21■□□□□ 0.51
VPS33A-208ENST00000543633 EXOC6Q8TAG9 804 aa18.21■□□□□ 0.51
VPS33A-208ENST00000543633 SYNMO15061 1565 aa18.21■□□□□ 0.51
VPS33A-208ENST00000543633 ABCC1P33527 1531 aa18.2■□□□□ 0.5
VPS33A-208ENST00000543633 SPHKAPQ2M3C7 1700 aa18.2■□□□□ 0.5
VPS33A-208ENST00000543633 TMF1P82094 1093 aa18.2■□□□□ 0.5
VPS33A-208ENST00000543633 CEP152O94986 1710 aa18.18■□□□□ 0.5
VPS33A-208ENST00000543633 NBPF1Q3BBV0 1214 aa18.18■□□□□ 0.5
VPS33A-208ENST00000543633 FANCAO15360 1455 aa18.17■□□□□ 0.5
VPS33A-208ENST00000543633 NEURL4Q96JN8 1562 aa18.17■□□□□ 0.5
VPS33A-208ENST00000543633 STAC3Q96MF2 364 aa18.16■□□□□ 0.5
VPS33A-208ENST00000543633 TRPM2O94759 1503 aa18.16■□□□□ 0.5
VPS33A-208ENST00000543633 KIAA1210Q9ULL0 1709 aa18.16■□□□□ 0.5
VPS33A-208ENST00000543633 RTL5Q5HYW3 569 aaPredicted RBP18.15■□□□□ 0.5
VPS33A-208ENST00000543633 BACH2Q9BYV9 841 aa18.15■□□□□ 0.5
VPS33A-208ENST00000543633 SCAPERQ9BY12 1400 aa18.14■□□□□ 0.49
VPS33A-208ENST00000543633 TRAPPC8Q9Y2L5 1435 aa18.13■□□□□ 0.49
VPS33A-208ENST00000543633 DEPDC5O75140 1603 aa18.13■□□□□ 0.49
VPS33A-208ENST00000543633 CD109Q6YHK3 1445 aa18.13■□□□□ 0.49
VPS33A-208ENST00000543633 PDE4AP27815 886 aa18.13■□□□□ 0.49
VPS33A-208ENST00000543633 PANK3Q9H999 370 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms