RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 IQGAP2Q13576 1575 aa8.21□□□□□ -1.1
CLIP1-217ENST00000543205 TMEM106CQ9BVX2 250 aa8.2□□□□□ -1.1
CLIP1-217ENST00000543205 COLQQ9Y215 455 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-217ENST00000543205 SHROOM2Q13796 1616 aa8.2□□□□□ -1.1
CLIP1-217ENST00000543205 CARMIL2Q6F5E8 1435 aa8.19□□□□□ -1.1
CLIP1-217ENST00000543205 GTPBP6O43824 516 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-217ENST00000543205 RYDENQ9NUL5 291 aaKnown RBP8.19□□□□□ -1.1
CLIP1-217ENST00000543205 CTTNBP2Q8WZ74 1663 aa8.18□□□□□ -1.1
CLIP1-217ENST00000543205 GOLGA2Q08379 1002 aa8.18□□□□□ -1.1
CLIP1-217ENST00000543205 EFCAB3Q8N7B9 438 aa8.17□□□□□ -1.1
CLIP1-217ENST00000543205 ERCC6L2Q5T890 1561 aa8.17□□□□□ -1.1
CLIP1-217ENST00000543205 UGGT2Q9NYU1 1516 aa8.16□□□□□ -1.1
CLIP1-217ENST00000543205 TTBK1Q5TCY1 1321 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-217ENST00000543205 TTLL13PA6NNM8 815 aa8.15□□□□□ -1.11
CLIP1-217ENST00000543205 TNIKQ9UKE5 1360 aa8.14□□□□□ -1.11
CLIP1-217ENST00000543205 LOC105371045A0A1W2PR82 267 aa8.14□□□□□ -1.11
CLIP1-217ENST00000543205 P3H3Q8IVL6 736 aa8.14□□□□□ -1.11
CLIP1-217ENST00000543205 TSHZ2Q9NRE2 1034 aa8.14□□□□□ -1.11
CLIP1-217ENST00000543205 DISP1Q96F81 1524 aa8.14□□□□□ -1.11
CLIP1-217ENST00000543205 MFRPQ9BY79 579 aa8.13□□□□□ -1.11
CLIP1-217ENST00000543205 PTPRGP23470 1445 aa8.13□□□□□ -1.11
CLIP1-217ENST00000543205 SOX12O15370 315 aa8.13□□□□□ -1.11
CLIP1-217ENST00000543205 KIAA0556O60303 1618 aa8.13□□□□□ -1.11
CLIP1-217ENST00000543205 MKRN3Q13064 507 aaKnown RBP8.12□□□□□ -1.11
CLIP1-217ENST00000543205 NLRP6P59044 892 aa8.12□□□□□ -1.11
CLIP1-217ENST00000543205 PHF8Q9UPP1 1060 aa8.12□□□□□ -1.11
CLIP1-217ENST00000543205 TRIM35Q9UPQ4 493 aa8.1□□□□□ -1.11
CLIP1-217ENST00000543205 SAMD9Q5K651 1589 aa8.09□□□□□ -1.11
CLIP1-217ENST00000543205 EFCAB5A4FU69 1503 aa8.09□□□□□ -1.11
CLIP1-217ENST00000543205 FBXO22Q8NEZ5 403 aa8.08□□□□□ -1.12
CLIP1-217ENST00000543205 FHOD3Q2V2M9 1422 aa8.08□□□□□ -1.12
CLIP1-217ENST00000543205 CLIP1P30622 1438 aa8.08□□□□□ -1.12
CLIP1-217ENST00000543205 UACAQ9BZF9 1416 aa8.08□□□□□ -1.12
CLIP1-217ENST00000543205 PLCG2P16885 1265 aa8.08□□□□□ -1.12
CLIP1-217ENST00000543205 NBR1Q14596 966 aa8.07□□□□□ -1.12
CLIP1-217ENST00000543205 ARHGAP35Q9NRY4 1499 aa8.07□□□□□ -1.12
CLIP1-217ENST00000543205 CEP162Q5TB80 1403 aa8.06□□□□□ -1.12
CLIP1-217ENST00000543205 UHRF1BP1LA0JNW5 1464 aa8.05□□□□□ -1.12
CLIP1-217ENST00000543205 PLB1Q6P1J6 1458 aa8.05□□□□□ -1.12
CLIP1-217ENST00000543205 FMN1Q68DA7 1419 aa8.04□□□□□ -1.12
CLIP1-217ENST00000543205 PPP1R37O75864 691 aa8.04□□□□□ -1.12
CLIP1-217ENST00000543205 NPM2Q86SE8 214 aaKnown RBP8.04□□□□□ -1.12
CLIP1-217ENST00000543205 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.04□□□□□ -1.12
CLIP1-217ENST00000543205 ABCC2Q92887 1545 aa8.04□□□□□ -1.12
CLIP1-217ENST00000543205 ADCY10Q96PN6 1610 aa8.04□□□□□ -1.12
CLIP1-217ENST00000543205 TRIM26Q12899 539 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-217ENST00000543205 ILDR1Q86SU0 546 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-217ENST00000543205 MS4A4AQ96JQ5 239 aa8.03□□□□□ -1.12
CLIP1-217ENST00000543205 ATP1B4Q9UN42 357 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-217ENST00000543205 ABCA8O94911 1581 aa8.03□□□□□ -1.12
CLIP1-217ENST00000543205 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.03□□□□□ -1.12
CLIP1-217ENST00000543205 ARID3CA6NKF2 412 aa8.02□□□□□ -1.13
CLIP1-217ENST00000543205 RAPGEF6Q8TEU7 1601 aa8.01□□□□□ -1.13
CLIP1-217ENST00000543205 MARVELD3Q96A59 401 aa8.01□□□□□ -1.13
CLIP1-217ENST00000543205 EMP3P54852 163 aa8□□□□□ -1.13
CLIP1-217ENST00000543205 KDM5BQ9UGL1 1544 aa8□□□□□ -1.13
CLIP1-217ENST00000543205 KRTAP3-3Q9BYR6 98 aa7.99□□□□□ -1.13
CLIP1-217ENST00000543205 KRTAP3-2Q9BYR7 98 aa7.99□□□□□ -1.13
CLIP1-217ENST00000543205 ATP10BO94823 1461 aa7.98□□□□□ -1.13
CLIP1-217ENST00000543205 NUP153P49790 1475 aaKnown RBP7.98□□□□□ -1.13
CLIP1-217ENST00000543205 CASKIN1Q8WXD9 1431 aa7.98□□□□□ -1.13
CLIP1-217ENST00000543205 IRX5P78411 483 aaPredicted RBP7.98□□□□□ -1.13
CLIP1-217ENST00000543205 CADPS2Q86UW7 1296 aa7.98□□□□□ -1.13
CLIP1-217ENST00000543205 ASXL2Q76L83 1435 aa7.98□□□□□ -1.13
CLIP1-217ENST00000543205 MAPKBP1O60336 1514 aa7.98□□□□□ -1.13
CLIP1-217ENST00000543205 ZCCHC11Q5TAX3 1644 aaKnown RBP7.97□□□□□ -1.13
CLIP1-217ENST00000543205 HECW1Q76N89 1606 aa7.97□□□□□ -1.13
CLIP1-217ENST00000543205 PLEKHD1A6NEE1 506 aa7.96□□□□□ -1.13
CLIP1-217ENST00000543205 FAM69CQ0P6D2 419 aa7.96□□□□□ -1.14
CLIP1-217ENST00000543205 KCNH8Q96L42 1107 aa7.96□□□□□ -1.14
CLIP1-217ENST00000543205 OCEL1Q9H607 264 aa7.96□□□□□ -1.14
CLIP1-217ENST00000543205 CDK11AQ9UQ88 783 aaPredicted RBP7.96□□□□□ -1.14
CLIP1-217ENST00000543205 FYCO1Q9BQS8 1478 aa7.96□□□□□ -1.14
CLIP1-217ENST00000543205 EPRSP07814 1512 aaKnown RBP7.95□□□□□ -1.14
CLIP1-217ENST00000543205 HRCP23327 699 aa7.95□□□□□ -1.14
CLIP1-217ENST00000543205 PDCD7Q8N8D1 485 aaKnown RBP7.95□□□□□ -1.14
CLIP1-217ENST00000543205 PCF11O94913 1555 aaKnown RBP7.95□□□□□ -1.14
CLIP1-217ENST00000543205 VPS8Q8N3P4 1428 aa7.95□□□□□ -1.14
CLIP1-217ENST00000543205 WDR7Q9Y4E6 1490 aa7.95□□□□□ -1.14
CLIP1-217ENST00000543205 DPY19L2Q6NUT2 758 aa7.95□□□□□ -1.14
CLIP1-217ENST00000543205 HS3ST6Q96QI5 342 aa7.95□□□□□ -1.14
CLIP1-217ENST00000543205 ABCC10Q5T3U5 1492 aa7.94□□□□□ -1.14
CLIP1-217ENST00000543205 CCDC18Q5T9S5 1454 aa7.94□□□□□ -1.14
CLIP1-217ENST00000543205 CDK13Q14004 1512 aaKnown RBP7.94□□□□□ -1.14
CLIP1-217ENST00000543205 WDR70Q9NW82 654 aa7.93□□□□□ -1.14
CLIP1-217ENST00000543205 G3V3G9 751 aa7.92□□□□□ -1.14
CLIP1-217ENST00000543205 KDM4FA0A1W2PPD8 638 aa7.91□□□□□ -1.14
CLIP1-217ENST00000543205 DIP2BQ9P265 1576 aa7.91□□□□□ -1.14
CLIP1-217ENST00000543205 MICALL2Q8IY33 904 aa7.9□□□□□ -1.14
CLIP1-217ENST00000543205 RNF166Q96A37 237 aaPredicted RBP7.9□□□□□ -1.15
CLIP1-217ENST00000543205 GLI2P10070 1586 aa7.9□□□□□ -1.15
CLIP1-217ENST00000543205 TROQ12816 1431 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-217ENST00000543205 FAM205CA6NFA0 338 aa7.89□□□□□ -1.15
CLIP1-217ENST00000543205 BOLA1Q9Y3E2 137 aa7.89□□□□□ -1.15
CLIP1-217ENST00000543205 LRRIQ1Q96JM4 1722 aa7.89□□□□□ -1.15
CLIP1-217ENST00000543205 MTUS2Q5JR59 1369 aa7.89□□□□□ -1.15
CLIP1-217ENST00000543205 CD109Q6YHK3 1445 aa7.88□□□□□ -1.15
CLIP1-217ENST00000543205 KIF13AQ9H1H9 1805 aa7.88□□□□□ -1.15
CLIP1-217ENST00000543205 PDE4AP27815 886 aa7.88□□□□□ -1.15
CLIP1-217ENST00000543205 L3MBTL3Q96JM7 780 aaPredicted RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms