RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ERBINQ96RT1 1412 aa22.67■■□□□ 1.22
COL4A1-204ENST00000543140 PLA2R1Q13018 1463 aa22.66■■□□□ 1.22
COL4A1-204ENST00000543140 BCORL1Q5H9F3 1711 aa22.65■■□□□ 1.22
COL4A1-204ENST00000543140 KDM5CP41229 1560 aa22.65■■□□□ 1.22
COL4A1-204ENST00000543140 RALGAPBQ86X10 1494 aa22.65■■□□□ 1.22
COL4A1-204ENST00000543140 ASXL2Q76L83 1435 aa22.65■■□□□ 1.22
COL4A1-204ENST00000543140 FANCAO15360 1455 aa22.64■■□□□ 1.22
COL4A1-204ENST00000543140 ARAP3Q8WWN8 1544 aa22.64■■□□□ 1.22
COL4A1-204ENST00000543140 MYT1LQ9UL68 1186 aa22.62■■□□□ 1.21
COL4A1-204ENST00000543140 ABCA9Q8IUA7 1624 aa22.61■■□□□ 1.21
COL4A1-204ENST00000543140 PRKRIP1Q9H875 184 aaPredicted RBP22.6■■□□□ 1.21
COL4A1-204ENST00000543140 MAGI2Q86UL8 1455 aa22.6■■□□□ 1.21
COL4A1-204ENST00000543140 ZFYVE16Q7Z3T8 1539 aa22.6■■□□□ 1.21
COL4A1-204ENST00000543140 CCDC184Q52MB2 194 aa22.6■■□□□ 1.21
COL4A1-204ENST00000543140 SUPT16HQ9Y5B9 1047 aaKnown RBP22.59■■□□□ 1.21
COL4A1-204ENST00000543140 NPM1P06748 294 aaKnown RBP eCLIP22.58■■□□□ 1.21
COL4A1-204ENST00000543140 RTEL1-TNFRSF6BF6WH68 1400 aa22.58■■□□□ 1.2
COL4A1-204ENST00000543140 CNGB1Q14028 1251 aaPredicted RBP22.57■■□□□ 1.2
COL4A1-204ENST00000543140 ROCK2O75116 1388 aaKnown RBP22.57■■□□□ 1.2
COL4A1-204ENST00000543140 SCAPERQ9BY12 1400 aa22.56■■□□□ 1.2
COL4A1-204ENST00000543140 ADGRL1O94910 1474 aa22.56■■□□□ 1.2
COL4A1-204ENST00000543140 ST20-MTHFSA0A0A6YYL1 179 aa22.56■■□□□ 1.2
COL4A1-204ENST00000543140 PRAG1Q86YV5 1406 aa22.54■■□□□ 1.2
COL4A1-204ENST00000543140 A2MP01023 1474 aa22.54■■□□□ 1.2
COL4A1-204ENST00000543140 ATP7AQ04656 1500 aa22.54■■□□□ 1.2
COL4A1-204ENST00000543140 HNRNPUQ00839 825 aaKnown RBP eCLIP22.53■■□□□ 1.2
COL4A1-204ENST00000543140 NBPF1Q3BBV0 1214 aa22.52■■□□□ 1.2
COL4A1-204ENST00000543140 TRPM1Q7Z4N2 1603 aa22.5■■□□□ 1.19
COL4A1-204ENST00000543140 INO80Q9ULG1 1556 aaPredicted RBP22.5■■□□□ 1.19
COL4A1-204ENST00000543140 E9PCH4 1651 aa22.5■■□□□ 1.19
COL4A1-204ENST00000543140 ATP10AO60312 1499 aa22.5■■□□□ 1.19
COL4A1-204ENST00000543140 KIF3BO15066 747 aa22.5■■□□□ 1.19
COL4A1-204ENST00000543140 MRS2Q9HD23 443 aa22.5■■□□□ 1.19
COL4A1-204ENST00000543140 ARID4BQ4LE39 1312 aaPredicted RBP22.47■■□□□ 1.19
COL4A1-204ENST00000543140 FAM9BQ8IZU0 186 aa22.47■■□□□ 1.19
COL4A1-204ENST00000543140 DHX29Q7Z478 1369 aaKnown RBP22.47■■□□□ 1.19
COL4A1-204ENST00000543140 DEPDC5O75140 1603 aa22.44■■□□□ 1.18
COL4A1-204ENST00000543140 KANK1Q14678 1352 aa22.42■■□□□ 1.18
COL4A1-204ENST00000543140 CD109Q6YHK3 1445 aa22.42■■□□□ 1.18
COL4A1-204ENST00000543140 FKBP8Q14318 412 aa22.41■■□□□ 1.18
COL4A1-204ENST00000543140 KIDINS220Q9ULH0 1771 aa22.4■■□□□ 1.18
COL4A1-204ENST00000543140 SPHKAPQ2M3C7 1700 aa22.39■■□□□ 1.18
COL4A1-204ENST00000543140 TET3O43151 1660 aa22.39■■□□□ 1.17
COL4A1-204ENST00000543140 GPRASP1Q5JY77 1395 aa22.38■■□□□ 1.17
COL4A1-204ENST00000543140 TRPM2O94759 1503 aa22.38■■□□□ 1.17
COL4A1-204ENST00000543140 BCANQ96GW7 911 aa22.37■■□□□ 1.17
COL4A1-204ENST00000543140 ZNF518AQ6AHZ1 1483 aa22.37■■□□□ 1.17
COL4A1-204ENST00000543140 CLTCL1P53675 1640 aa22.36■■□□□ 1.17
COL4A1-204ENST00000543140 EIF2AK4Q9P2K8 1649 aaKnown RBP22.36■■□□□ 1.17
COL4A1-204ENST00000543140 VWDEQ8N2E2 1590 aa22.35■■□□□ 1.17
COL4A1-204ENST00000543140 PTPRTO14522 1441 aa22.35■■□□□ 1.17
COL4A1-204ENST00000543140 MROH1Q8NDA8 1641 aa22.35■■□□□ 1.17
COL4A1-204ENST00000543140 CEP152O94986 1710 aa22.34■■□□□ 1.17
COL4A1-204ENST00000543140 PRDM15P57071 1507 aaPredicted RBP22.34■■□□□ 1.17
COL4A1-204ENST00000543140 NEFLP07196 543 aa22.33■■□□□ 1.17
COL4A1-204ENST00000543140 LAMC1P11047 1609 aa22.31■■□□□ 1.16
COL4A1-204ENST00000543140 TESK2Q96S53 571 aa22.3■■□□□ 1.16
COL4A1-204ENST00000543140 POGZQ7Z3K3 1410 aa22.3■■□□□ 1.16
COL4A1-204ENST00000543140 CFAP74Q9C0B2 1584 aa22.29■■□□□ 1.16
COL4A1-204ENST00000543140 DISP3Q9P2K9 1392 aa22.29■■□□□ 1.16
COL4A1-204ENST00000543140 UGGT1Q9NYU2 1555 aa22.29■■□□□ 1.16
COL4A1-204ENST00000543140 MADDQ8WXG6 1647 aa22.29■■□□□ 1.16
COL4A1-204ENST00000543140 RAPGEF3O95398 923 aa22.27■■□□□ 1.16
COL4A1-204ENST00000543140 CYB5RLQ6IPT4 315 aa22.27■■□□□ 1.16
COL4A1-204ENST00000543140 GGT6Q6P531 493 aa22.26■■□□□ 1.15
COL4A1-204ENST00000543140 RNF17Q9BXT8 1623 aaKnown RBP22.26■■□□□ 1.15
COL4A1-204ENST00000543140 CFAP65Q6ZU64 1925 aaKnown RBP22.25■■□□□ 1.15
COL4A1-204ENST00000543140 COL17A1Q9UMD9 1497 aaPredicted RBP22.25■■□□□ 1.15
COL4A1-204ENST00000543140 EFCAB6Q5THR3 1501 aa22.24■■□□□ 1.15
COL4A1-204ENST00000543140 PPRC1Q5VV67 1664 aaKnown RBP22.24■■□□□ 1.15
COL4A1-204ENST00000543140 TMC1Q8TDI8 760 aa22.24■■□□□ 1.15
COL4A1-204ENST00000543140 HECW2Q9P2P5 1572 aa22.23■■□□□ 1.15
COL4A1-204ENST00000543140 MLH3Q9UHC1 1453 aa22.23■■□□□ 1.15
COL4A1-204ENST00000543140 TMF1P82094 1093 aa22.22■■□□□ 1.15
COL4A1-204ENST00000543140 ZBED9Q6R2W3 1325 aa22.22■■□□□ 1.15
COL4A1-204ENST00000543140 FRMPD1Q5SYB0 1578 aa22.21■■□□□ 1.15
COL4A1-204ENST00000543140 SENP3-EIF4A1A0A087X0R7 540 aa22.21■■□□□ 1.15
COL4A1-204ENST00000543140 ABCA6Q8N139 1617 aa22.19■■□□□ 1.14
COL4A1-204ENST00000543140 KIF1BO60333 1816 aa22.19■■□□□ 1.14
COL4A1-204ENST00000543140 RALBP1Q15311 655 aa22.18■■□□□ 1.14
COL4A1-204ENST00000543140 PNISRQ8TF01 805 aaKnown RBP22.18■■□□□ 1.14
COL4A1-204ENST00000543140 STAC3Q96MF2 364 aa22.18■■□□□ 1.14
COL4A1-204ENST00000543140 PER1O15534 1290 aaPredicted RBP22.18■■□□□ 1.14
COL4A1-204ENST00000543140 IRX6P78412 446 aaPredicted RBP22.18■■□□□ 1.14
COL4A1-204ENST00000543140 MYBBP1AQ9BQG0 1328 aaKnown RBP22.18■■□□□ 1.14
COL4A1-204ENST00000543140 IQGAP1P46940 1657 aa22.17■■□□□ 1.14
COL4A1-204ENST00000543140 NEO1Q92859 1461 aa22.17■■□□□ 1.14
COL4A1-204ENST00000543140 CHGAP10645 457 aaKnown RBP22.17■■□□□ 1.14
COL4A1-204ENST00000543140 PANK3Q9H999 370 aa22.17■■□□□ 1.14
COL4A1-204ENST00000543140 LMTK2Q8IWU2 1503 aa22.16■■□□□ 1.14
COL4A1-204ENST00000543140 ADGRF5Q8IZF2 1346 aa22.15■■□□□ 1.14
COL4A1-204ENST00000543140 WASHC2CQ9Y4E1 1318 aa22.15■■□□□ 1.14
COL4A1-204ENST00000543140 KTN1Q86UP2 1357 aaKnown RBP22.15■■□□□ 1.14
COL4A1-204ENST00000543140 CC2D1BQ5T0F9 858 aaKnown RBP22.15■■□□□ 1.14
COL4A1-204ENST00000543140 CFAP70Q5T0N1 1121 aa22.15■■□□□ 1.14
COL4A1-204ENST00000543140 MROH2AA6NES4 1674 aa22.14■■□□□ 1.13
COL4A1-204ENST00000543140 SCAF11Q99590 1463 aaKnown RBP22.13■■□□□ 1.13
COL4A1-204ENST00000543140 NPATQ14207 1427 aa22.13■■□□□ 1.13
COL4A1-204ENST00000543140 BRD4O60885 1362 aaPredicted RBP22.11■■□□□ 1.13
COL4A1-204ENST00000543140 PARD3Q8TEW0 1356 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms