RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 ATP10BO94823 1461 aa20.43■□□□□ 0.86
CNOT9-208ENST00000542068 DNMT1P26358 1616 aaKnown RBP20.42■□□□□ 0.86
CNOT9-208ENST00000542068 RCAN3Q9UKA8 241 aa20.41■□□□□ 0.86
CNOT9-208ENST00000542068 RTN4Q9NQC3 1192 aaKnown RBP20.41■□□□□ 0.86
CNOT9-208ENST00000542068 RRP1P56182 461 aaKnown RBP20.4■□□□□ 0.86
CNOT9-208ENST00000542068 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
CNOT9-208ENST00000542068 MYBBP1AQ9BQG0 1328 aaKnown RBP20.35■□□□□ 0.85
CNOT9-208ENST00000542068 CHGAP10645 457 aaKnown RBP20.35■□□□□ 0.85
CNOT9-208ENST00000542068 RNF123Q5XPI4 1314 aa20.34■□□□□ 0.85
CNOT9-208ENST00000542068 PDE4AP27815 886 aa20.34■□□□□ 0.85
CNOT9-208ENST00000542068 CCDC144AA2RUR9 1427 aa20.33■□□□□ 0.85
CNOT9-208ENST00000542068 NEFMP07197 916 aa20.33■□□□□ 0.84
CNOT9-208ENST00000542068 AFAP1Q8N556 730 aa20.33■□□□□ 0.84
CNOT9-208ENST00000542068 SLC4A3P48751 1232 aa20.29■□□□□ 0.84
CNOT9-208ENST00000542068 NUP160Q12769 1436 aa20.29■□□□□ 0.84
CNOT9-208ENST00000542068 RALBP1Q15311 655 aa20.28■□□□□ 0.84
CNOT9-208ENST00000542068 ARHGAP5Q13017 1502 aa20.28■□□□□ 0.84
CNOT9-208ENST00000542068 IL27Q8NEV9 243 aa20.27■□□□□ 0.84
CNOT9-208ENST00000542068 PANK3Q9H999 370 aa20.27■□□□□ 0.84
CNOT9-208ENST00000542068 CRBNQ96SW2 442 aa20.27■□□□□ 0.84
CNOT9-208ENST00000542068 EFCAB2Q5VUJ9 269 aa20.26■□□□□ 0.83
CNOT9-208ENST00000542068 NLRP13Q86W25 1043 aa20.26■□□□□ 0.83
CNOT9-208ENST00000542068 KTN1Q86UP2 1357 aaKnown RBP20.24■□□□□ 0.83
CNOT9-208ENST00000542068 TCERG1O14776 1098 aaKnown RBP20.24■□□□□ 0.83
CNOT9-208ENST00000542068 BRD4O60885 1362 aaPredicted RBP20.23■□□□□ 0.83
CNOT9-208ENST00000542068 RSPH4AQ5TD94 716 aa20.22■□□□□ 0.83
CNOT9-208ENST00000542068 C20orf194Q5TEA3 1177 aa20.22■□□□□ 0.83
CNOT9-208ENST00000542068 ITSN2Q9NZM3 1697 aa20.22■□□□□ 0.83
CNOT9-208ENST00000542068 ARID4BQ4LE39 1312 aaPredicted RBP20.21■□□□□ 0.83
CNOT9-208ENST00000542068 KIF3BO15066 747 aa20.21■□□□□ 0.83
CNOT9-208ENST00000542068 MBD5Q9P267 1494 aa20.2■□□□□ 0.83
CNOT9-208ENST00000542068 PLEKHH2Q8IVE3 1493 aa20.2■□□□□ 0.82
CNOT9-208ENST00000542068 BACH2Q9BYV9 841 aa20.2■□□□□ 0.82
CNOT9-208ENST00000542068 SPAG9O60271 1321 aaKnown RBP20.2■□□□□ 0.82
CNOT9-208ENST00000542068 TMF1P82094 1093 aa20.2■□□□□ 0.82
CNOT9-208ENST00000542068 CCDC141Q6ZP82 1450 aa20.19■□□□□ 0.82
CNOT9-208ENST00000542068 LRPPRCP42704 1394 aaKnown RBP20.19■□□□□ 0.82
CNOT9-208ENST00000542068 KDM5CP41229 1560 aa20.19■□□□□ 0.82
CNOT9-208ENST00000542068 ABCC10Q5T3U5 1492 aa20.18■□□□□ 0.82
CNOT9-208ENST00000542068 ADGRL2O95490 1459 aa20.16■□□□□ 0.82
CNOT9-208ENST00000542068 KNSTRNQ9Y448 316 aa20.16■□□□□ 0.82
CNOT9-208ENST00000542068 SYCP2Q9BX26 1530 aa20.16■□□□□ 0.82
CNOT9-208ENST00000542068 ANO8Q9HCE9 1232 aaPredicted RBP20.15■□□□□ 0.82
CNOT9-208ENST00000542068 DAXXQ9UER7 740 aaPredicted RBP20.15■□□□□ 0.82
CNOT9-208ENST00000542068 RALGAPBQ86X10 1494 aa20.15■□□□□ 0.82
CNOT9-208ENST00000542068 TNNT2P45379 298 aaPredicted RBP20.15■□□□□ 0.82
CNOT9-208ENST00000542068 RGS3P49796 1198 aa20.15■□□□□ 0.82
CNOT9-208ENST00000542068 ADAMTS8Q9UP79 889 aa20.13■□□□□ 0.81
CNOT9-208ENST00000542068 WDR43Q15061 677 aaKnown RBP eCLIP20.12■□□□□ 0.81
CNOT9-208ENST00000542068 NUTM2DQ5VT03 806 aaPredicted RBP20.12■□□□□ 0.81
CNOT9-208ENST00000542068 ABCA8O94911 1581 aa20.12■□□□□ 0.81
CNOT9-208ENST00000542068 CDC42BPAQ5VT25 1732 aa20.11■□□□□ 0.81
CNOT9-208ENST00000542068 PER1O15534 1290 aaPredicted RBP20.11■□□□□ 0.81
CNOT9-208ENST00000542068 POLR1AO95602 1720 aaPredicted RBP20.11■□□□□ 0.81
CNOT9-208ENST00000542068 GGT6Q6P531 493 aa20.1■□□□□ 0.81
CNOT9-208ENST00000542068 DISP3Q9P2K9 1392 aa20.1■□□□□ 0.81
CNOT9-208ENST00000542068 FAM135AQ9P2D6 1515 aa20.1■□□□□ 0.81
CNOT9-208ENST00000542068 PDE3BQ13370 1112 aa20.1■□□□□ 0.81
CNOT9-208ENST00000542068 CCDC146Q8IYE0 955 aa20.1■□□□□ 0.81
CNOT9-208ENST00000542068 ERCC6L2Q5T890 1561 aa20.09■□□□□ 0.81
CNOT9-208ENST00000542068 ADGBQ8N7X0 1667 aa20.08■□□□□ 0.81
CNOT9-208ENST00000542068 UHRF1BP1Q6BDS2 1440 aa20.07■□□□□ 0.8
CNOT9-208ENST00000542068 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.07■□□□□ 0.8
CNOT9-208ENST00000542068 PARD3Q8TEW0 1356 aa20.06■□□□□ 0.8
CNOT9-208ENST00000542068 NEUROD2Q15784 382 aa20.05■□□□□ 0.8
CNOT9-208ENST00000542068 MS4A1P11836 297 aa20.05■□□□□ 0.8
CNOT9-208ENST00000542068 TESK2Q96S53 571 aa20.04■□□□□ 0.8
CNOT9-208ENST00000542068 CFAP70Q5T0N1 1121 aa20.04■□□□□ 0.8
CNOT9-208ENST00000542068 SAMD9LQ8IVG5 1584 aa20.03■□□□□ 0.8
CNOT9-208ENST00000542068 NPM1P06748 294 aaKnown RBP eCLIP20.03■□□□□ 0.8
CNOT9-208ENST00000542068 PRAG1Q86YV5 1406 aa20.03■□□□□ 0.8
CNOT9-208ENST00000542068 TRAPPC8Q9Y2L5 1435 aa20.03■□□□□ 0.8
CNOT9-208ENST00000542068 PPM1GO15355 546 aaPredicted RBP20.03■□□□□ 0.8
CNOT9-208ENST00000542068 SAFB2Q14151 953 aaKnown RBP eCLIP20.03■□□□□ 0.8
CNOT9-208ENST00000542068 SHANK2Q9UPX8 1470 aa20.02■□□□□ 0.8
CNOT9-208ENST00000542068 BRPF3Q9ULD4 1205 aa20.02■□□□□ 0.8
CNOT9-208ENST00000542068 SCAPERQ9BY12 1400 aa19.99■□□□□ 0.79
CNOT9-208ENST00000542068 TTC37Q6PGP7 1564 aa19.99■□□□□ 0.79
CNOT9-208ENST00000542068 TRAK1Q9UPV9 953 aa19.99■□□□□ 0.79
CNOT9-208ENST00000542068 NFKBIBQ15653 356 aa19.98■□□□□ 0.79
CNOT9-208ENST00000542068 DDRGK1Q96HY6 314 aa19.98■□□□□ 0.79
CNOT9-208ENST00000542068 A2MP01023 1474 aa19.98■□□□□ 0.79
CNOT9-208ENST00000542068 PLA2R1Q13018 1463 aa19.98■□□□□ 0.79
CNOT9-208ENST00000542068 ERBINQ96RT1 1412 aa19.98■□□□□ 0.79
CNOT9-208ENST00000542068 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.97■□□□□ 0.79
CNOT9-208ENST00000542068 ADCY10Q96PN6 1610 aa19.97■□□□□ 0.79
CNOT9-208ENST00000542068 CROCC2H7BZ55 1655 aa19.96■□□□□ 0.79
CNOT9-208ENST00000542068 PPP2R1AP30153 589 aa19.96■□□□□ 0.79
CNOT9-208ENST00000542068 ARHGEF12Q9NZN5 1544 aa19.95■□□□□ 0.78
CNOT9-208ENST00000542068 PLEKHH1Q9ULM0 1364 aa19.95■□□□□ 0.78
CNOT9-208ENST00000542068 GOLGA2Q08379 1002 aa19.94■□□□□ 0.78
CNOT9-208ENST00000542068 BCAR3O75815 825 aa19.94■□□□□ 0.78
CNOT9-208ENST00000542068 TMEM132EQ6IEE7 984 aa19.94■□□□□ 0.78
CNOT9-208ENST00000542068 KANK1Q14678 1352 aa19.94■□□□□ 0.78
CNOT9-208ENST00000542068 APAF1O14727 1248 aa19.93■□□□□ 0.78
CNOT9-208ENST00000542068 DUSP27Q5VZP5 1158 aa19.93■□□□□ 0.78
CNOT9-208ENST00000542068 CDC42BPBQ9Y5S2 1711 aa19.92■□□□□ 0.78
CNOT9-208ENST00000542068 CHD1O14646 1710 aa19.92■□□□□ 0.78
CNOT9-208ENST00000542068 FRAT1Q92837 279 aaPredicted RBP19.92■□□□□ 0.78
CNOT9-208ENST00000542068 SPINK5Q9NQ38 1064 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms