RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 NBPF3Q9H094 633 aa10.31□□□□□ -0.76
PRKDC-209ENST00000540819 PCDHGA10Q9Y5H3 936 aa10.31□□□□□ -0.76
PRKDC-209ENST00000540819 BHMG1C9JSJ3 638 aaPredicted RBP10.3□□□□□ -0.76
PRKDC-209ENST00000540819 FBXW7Q969H0 707 aa10.3□□□□□ -0.76
PRKDC-209ENST00000540819 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.3□□□□□ -0.76
PRKDC-209ENST00000540819 PHF14O94880 888 aa10.29□□□□□ -0.76
PRKDC-209ENST00000540819 TYW1BQ6NUM6 668 aa10.29□□□□□ -0.76
PRKDC-209ENST00000540819 ERICH6Q7L0X2 663 aa10.29□□□□□ -0.76
PRKDC-209ENST00000540819 SPRYD3Q8NCJ5 442 aa10.28□□□□□ -0.76
PRKDC-209ENST00000540819 WNT2BQ93097 391 aa10.28□□□□□ -0.76
PRKDC-209ENST00000540819 TULP1O00294 542 aaPredicted RBP10.27□□□□□ -0.77
PRKDC-209ENST00000540819 CAMK2BQ13554 666 aa10.27□□□□□ -0.77
PRKDC-209ENST00000540819 PPP1R3GB7ZBB8 358 aa10.26□□□□□ -0.77
PRKDC-209ENST00000540819 DPYSL4O14531 572 aa10.25□□□□□ -0.77
PRKDC-209ENST00000540819 EPAS1Q99814 870 aa10.25□□□□□ -0.77
PRKDC-209ENST00000540819 THSD4Q6ZMP0 1018 aa10.24□□□□□ -0.77
PRKDC-209ENST00000540819 RABGEF1Q9UJ41 708 aa10.24□□□□□ -0.77
PRKDC-209ENST00000540819 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
PRKDC-209ENST00000540819 PROX2Q3B8N5 592 aa10.21□□□□□ -0.77
PRKDC-209ENST00000540819 COL9A1P20849 921 aa10.2□□□□□ -0.78
PRKDC-209ENST00000540819 C6orf132Q5T0Z8 1188 aa10.2□□□□□ -0.78
PRKDC-209ENST00000540819 ANKK1Q8NFD2 765 aa10.19□□□□□ -0.78
PRKDC-209ENST00000540819 DDX12PQ92771 950 aa10.18□□□□□ -0.78
PRKDC-209ENST00000540819 RBM33Q96EV2 1170 aaKnown RBP10.18□□□□□ -0.78
PRKDC-209ENST00000540819 CFAP44Q96MT7 982 aa10.18□□□□□ -0.78
PRKDC-209ENST00000540819 WDR70Q9NW82 654 aa10.18□□□□□ -0.78
PRKDC-209ENST00000540819 KIAA1468Q9P260 1216 aa10.18□□□□□ -0.78
PRKDC-209ENST00000540819 GTF3C3Q9Y5Q9 886 aa10.18□□□□□ -0.78
PRKDC-209ENST00000540819 ONECUT3O60422 494 aaPredicted RBP10.17□□□□□ -0.78
PRKDC-209ENST00000540819 PAXIP1Q6ZW49 1069 aaPredicted RBP10.16□□□□□ -0.78
PRKDC-209ENST00000540819 LAPTM4BQ86VI4 370 aa10.16□□□□□ -0.78
PRKDC-209ENST00000540819 HOMEZQ8IX15 550 aa10.15□□□□□ -0.78
PRKDC-209ENST00000540819 SPDYE16A6NNV3 312 aaPredicted RBP10.14□□□□□ -0.79
PRKDC-209ENST00000540819 E2F4Q16254 413 aa10.13□□□□□ -0.79
PRKDC-209ENST00000540819 MAP3K7O43318 606 aa10.12□□□□□ -0.79
PRKDC-209ENST00000540819 NBR1Q14596 966 aa10.12□□□□□ -0.79
PRKDC-209ENST00000540819 IFFO2Q5TF58 517 aa10.12□□□□□ -0.79
PRKDC-209ENST00000540819 ZFRQ96KR1 1074 aaKnown RBP10.12□□□□□ -0.79
PRKDC-209ENST00000540819 TRIM6-TRIM34B2RNG4 842 aa10.11□□□□□ -0.79
PRKDC-209ENST00000540819 PDIA6Q15084 440 aa10.11□□□□□ -0.79
PRKDC-209ENST00000540819 SEPT9Q9UHD8 586 aaPredicted RBP10.1□□□□□ -0.79
PRKDC-209ENST00000540819 SOWAHBA6NEL2 793 aa10.09□□□□□ -0.79
PRKDC-209ENST00000540819 BCAMP50895 628 aa10.09□□□□□ -0.79
PRKDC-209ENST00000540819 EN1Q05925 392 aaPredicted RBP10.09□□□□□ -0.79
PRKDC-209ENST00000540819 PACS2Q86VP3 889 aa10.09□□□□□ -0.79
PRKDC-209ENST00000540819 RGS20O76081 388 aa10.07□□□□□ -0.8
PRKDC-209ENST00000540819 FAM98CQ17RN3 349 aaKnown RBP10.07□□□□□ -0.8
PRKDC-209ENST00000540819 NYAP1Q6ZVC0 841 aa10.07□□□□□ -0.8
PRKDC-209ENST00000540819 GRXCR2A6NFK2 248 aa10.06□□□□□ -0.8
PRKDC-209ENST00000540819 TSR1Q2NL82 804 aaKnown RBP10.05□□□□□ -0.8
PRKDC-209ENST00000540819 CERKQ8TCT0 537 aa10.04□□□□□ -0.8
PRKDC-209ENST00000540819 LRCH3Q96II8 777 aa10.04□□□□□ -0.8
PRKDC-209ENST00000540819 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.04□□□□□ -0.8
PRKDC-209ENST00000540819 A0A0G2JS52 829 aa10.03□□□□□ -0.8
PRKDC-209ENST00000540819 WBP1LQ9NX94 342 aa10.03□□□□□ -0.8
PRKDC-209ENST00000540819 ARIH1Q9Y4X5 557 aaPredicted RBP10.03□□□□□ -0.8
PRKDC-209ENST00000540819 TSR3Q9UJK0 312 aaKnown RBP10.02□□□□□ -0.81
PRKDC-209ENST00000540819 CDCA7LQ96GN5 454 aa10.01□□□□□ -0.81
PRKDC-209ENST00000540819 TSKSQ9UJT2 592 aa10.01□□□□□ -0.81
PRKDC-209ENST00000540819 ITGBL1O95965 494 aaPredicted RBP10□□□□□ -0.81
PRKDC-209ENST00000540819 PRSS12P56730 875 aa10□□□□□ -0.81
PRKDC-209ENST00000540819 HPS5Q9UPZ3 1129 aa10□□□□□ -0.81
PRKDC-209ENST00000540819 KCNC4Q03721 635 aa9.99□□□□□ -0.81
PRKDC-209ENST00000540819 PPP4CP60510 307 aa9.98□□□□□ -0.81
PRKDC-209ENST00000540819 HDGFP51858 240 aaKnown RBP9.97□□□□□ -0.81
PRKDC-209ENST00000540819 TMEM132AQ24JP5 1023 aa9.97□□□□□ -0.81
PRKDC-209ENST00000540819 IRX2Q9BZI1 471 aaPredicted RBP9.96□□□□□ -0.82
PRKDC-209ENST00000540819 NBPF26B4DH59 902 aa9.95□□□□□ -0.82
PRKDC-209ENST00000540819 SMAPO00193 183 aa9.95□□□□□ -0.82
PRKDC-209ENST00000540819 PNMA3Q9UL41 463 aa9.95□□□□□ -0.82
PRKDC-209ENST00000540819 OSBPP22059 807 aa9.94□□□□□ -0.82
PRKDC-209ENST00000540819 TATDN2Q93075 761 aa9.94□□□□□ -0.82
PRKDC-209ENST00000540819 PRIM1P49642 420 aaKnown RBP9.93□□□□□ -0.82
PRKDC-209ENST00000540819 SAMD7Q7Z3H4 446 aa9.92□□□□□ -0.82
PRKDC-209ENST00000540819 FAM198AQ9UFP1 575 aa9.91□□□□□ -0.82
PRKDC-209ENST00000540819 NUDT18Q6ZVK8 323 aa9.9□□□□□ -0.82
PRKDC-209ENST00000540819 CDHR5Q9HBB8 845 aa9.9□□□□□ -0.82
PRKDC-209ENST00000540819 TSHZ2Q9NRE2 1034 aa9.9□□□□□ -0.82
PRKDC-209ENST00000540819 C14orf37Q86TY3 774 aa9.89□□□□□ -0.83
PRKDC-209ENST00000540819 RBM27Q9P2N5 1060 aaKnown RBP9.89□□□□□ -0.83
PRKDC-209ENST00000540819 RNF40O75150 1001 aa9.88□□□□□ -0.83
PRKDC-209ENST00000540819 ARHGEF1Q92888 912 aaKnown RBP9.87□□□□□ -0.83
PRKDC-209ENST00000540819 SLC4A3P48751 1232 aa9.85□□□□□ -0.83
PRKDC-209ENST00000540819 NECTIN2Q92692 538 aa9.85□□□□□ -0.83
PRKDC-209ENST00000540819 C3orf80F5H4A9 247 aa9.84□□□□□ -0.83
PRKDC-209ENST00000540819 RANGAP1P46060 587 aaPredicted RBP9.84□□□□□ -0.83
PRKDC-209ENST00000540819 PADI6Q6TGC4 694 aa9.83□□□□□ -0.84
PRKDC-209ENST00000540819 NPDC1Q9NQX5 325 aaPredicted RBP9.83□□□□□ -0.84
PRKDC-209ENST00000540819 TJAP1Q5JTD0 557 aa9.82□□□□□ -0.84
PRKDC-209ENST00000540819 IL21Q9HBE4 155 aa9.82□□□□□ -0.84
PRKDC-209ENST00000540819 SLF2Q8IX21 1173 aa9.81□□□□□ -0.84
PRKDC-209ENST00000540819 TTC13Q8NBP0 860 aa9.8□□□□□ -0.84
PRKDC-209ENST00000540819 MTRQ99707 1265 aa9.8□□□□□ -0.84
PRKDC-209ENST00000540819 MLLT3P42568 568 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-209ENST00000540819 SWT1Q5T5J6 900 aaKnown RBP9.79□□□□□ -0.84
PRKDC-209ENST00000540819 KCNV2Q8TDN2 545 aa9.78□□□□□ -0.84
PRKDC-209ENST00000540819 APLP1P51693 650 aa9.76□□□□□ -0.85
PRKDC-209ENST00000540819 Q6ZNB5 142 aa9.76□□□□□ -0.85
PRKDC-209ENST00000540819 NUTM2FA1L443 756 aa9.75□□□□□ -0.85
PRKDC-209ENST00000540819 P3H3Q8IVL6 736 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms