RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 TRAPPC8Q9Y2L5 1435 aa11.76□□□□□ -0.53
DDB1-217ENST00000540166 TXNDC2Q86VQ3 553 aa11.76□□□□□ -0.53
DDB1-217ENST00000540166 FBXO41Q8TF61 875 aa11.76□□□□□ -0.53
DDB1-217ENST00000540166 TOM1O60784 492 aa11.75□□□□□ -0.53
DDB1-217ENST00000540166 CERKQ8TCT0 537 aa11.75□□□□□ -0.53
DDB1-217ENST00000540166 PPP4R2Q9NY27 417 aa11.75□□□□□ -0.53
DDB1-217ENST00000540166 DAXXQ9UER7 740 aaPredicted RBP11.75□□□□□ -0.53
DDB1-217ENST00000540166 NCKAP5LQ9HCH0 1330 aa11.74□□□□□ -0.53
DDB1-217ENST00000540166 ZMYM3Q14202 1370 aa11.74□□□□□ -0.53
DDB1-217ENST00000540166 PCF11O94913 1555 aaKnown RBP11.73□□□□□ -0.53
DDB1-217ENST00000540166 PKD2Q13563 968 aa11.73□□□□□ -0.53
DDB1-217ENST00000540166 FBXO31Q5XUX0 539 aaPredicted RBP11.73□□□□□ -0.53
DDB1-217ENST00000540166 ABCA9Q8IUA7 1624 aa11.73□□□□□ -0.53
DDB1-217ENST00000540166 MAP3K4Q9Y6R4 1608 aa11.73□□□□□ -0.53
DDB1-217ENST00000540166 NPM2Q86SE8 214 aaKnown RBP11.72□□□□□ -0.53
DDB1-217ENST00000540166 NCOA2Q15596 1464 aa11.72□□□□□ -0.53
DDB1-217ENST00000540166 MYOM3Q5VTT5 1437 aa11.72□□□□□ -0.53
DDB1-217ENST00000540166 CNGB1Q14028 1251 aaPredicted RBP11.71□□□□□ -0.53
DDB1-217ENST00000540166 A2MP01023 1474 aa11.71□□□□□ -0.53
DDB1-217ENST00000540166 GLIPR1L2Q4G1C9 344 aa11.71□□□□□ -0.53
DDB1-217ENST00000540166 RAB3GAP2Q9H2M9 1393 aa11.71□□□□□ -0.54
DDB1-217ENST00000540166 EHBP1L1Q8N3D4 1523 aa11.7□□□□□ -0.54
DDB1-217ENST00000540166 CCER2I3L3R5 266 aa11.7□□□□□ -0.54
DDB1-217ENST00000540166 GPATCH8Q9UKJ3 1502 aaKnown RBP11.7□□□□□ -0.54
DDB1-217ENST00000540166 TONSLQ96HA7 1378 aa11.7□□□□□ -0.54
DDB1-217ENST00000540166 B4GALNT3Q6L9W6 998 aa11.69□□□□□ -0.54
DDB1-217ENST00000540166 PROSER2Q86WR7 435 aaPredicted RBP11.69□□□□□ -0.54
DDB1-217ENST00000540166 DHX29Q7Z478 1369 aaKnown RBP11.69□□□□□ -0.54
DDB1-217ENST00000540166 TNRQ92752 1358 aa11.69□□□□□ -0.54
DDB1-217ENST00000540166 KIF15Q9NS87 1388 aa11.69□□□□□ -0.54
DDB1-217ENST00000540166 LMTK3Q96Q04 1460 aa11.69□□□□□ -0.54
DDB1-217ENST00000540166 CCDC141Q6ZP82 1450 aa11.68□□□□□ -0.54
DDB1-217ENST00000540166 TTC37Q6PGP7 1564 aa11.68□□□□□ -0.54
DDB1-217ENST00000540166 KIAA1107Q9UPP5 1409 aa11.68□□□□□ -0.54
DDB1-217ENST00000540166 SLC4A1APQ9BWU0 796 aaKnown RBP11.67□□□□□ -0.54
DDB1-217ENST00000540166 SYCP2Q9BX26 1530 aa11.67□□□□□ -0.54
DDB1-217ENST00000540166 MYO5CQ9NQX4 1742 aa11.66□□□□□ -0.54
DDB1-217ENST00000540166 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
DDB1-217ENST00000540166 NUTM2DQ5VT03 806 aaPredicted RBP11.66□□□□□ -0.54
DDB1-217ENST00000540166 HAP1P54257 671 aaPredicted RBP11.65□□□□□ -0.54
DDB1-217ENST00000540166 POLR3GLQ9BT43 218 aa11.65□□□□□ -0.54
DDB1-217ENST00000540166 DISP3Q9P2K9 1392 aa11.65□□□□□ -0.54
DDB1-217ENST00000540166 NEFMP07197 916 aa11.65□□□□□ -0.54
DDB1-217ENST00000540166 SETD5Q9C0A6 1442 aa11.65□□□□□ -0.55
DDB1-217ENST00000540166 MEX3CQ5U5Q3 659 aaKnown RBP11.65□□□□□ -0.55
DDB1-217ENST00000540166 LRRC9Q6ZRR7 1453 aa11.64□□□□□ -0.55
DDB1-217ENST00000540166 MLH3Q9UHC1 1453 aa11.64□□□□□ -0.55
DDB1-217ENST00000540166 NUP155O75694 1391 aa11.64□□□□□ -0.55
DDB1-217ENST00000540166 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.63□□□□□ -0.55
DDB1-217ENST00000540166 UBE2Q2Q8WVN8 375 aa11.63□□□□□ -0.55
DDB1-217ENST00000540166 SLC26A8Q96RN1 970 aa11.63□□□□□ -0.55
DDB1-217ENST00000540166 FAM135AQ9P2D6 1515 aa11.62□□□□□ -0.55
DDB1-217ENST00000540166 ATF3P18847 181 aa11.62□□□□□ -0.55
DDB1-217ENST00000540166 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
DDB1-217ENST00000540166 LAS1LQ9Y4W2 734 aaKnown RBP11.62□□□□□ -0.55
DDB1-217ENST00000540166 RGL3Q3MIN7 710 aa11.62□□□□□ -0.55
DDB1-217ENST00000540166 IPO9Q96P70 1041 aaKnown RBP11.61□□□□□ -0.55
DDB1-217ENST00000540166 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.61□□□□□ -0.555e-11■■□□□ 11.4
DDB1-217ENST00000540166 RIMS1Q86UR5 1692 aaKnown RBP11.61□□□□□ -0.55
DDB1-217ENST00000540166 ARHGEF40Q8TER5 1519 aa11.61□□□□□ -0.55
DDB1-217ENST00000540166 FAM9BQ8IZU0 186 aa11.61□□□□□ -0.55
DDB1-217ENST00000540166 SLC52A1Q9NWF4 448 aa11.61□□□□□ -0.55
DDB1-217ENST00000540166 CAMSAP2Q08AD1 1489 aa11.61□□□□□ -0.55
DDB1-217ENST00000540166 HECW2Q9P2P5 1572 aa11.6□□□□□ -0.55
DDB1-217ENST00000540166 SUPT6HQ7KZ85 1726 aaKnown RBP11.6□□□□□ -0.55
DDB1-217ENST00000540166 MIA2Q96PC5 1412 aa11.6□□□□□ -0.55
DDB1-217ENST00000540166 PAK3O75914 559 aaPredicted RBP11.59□□□□□ -0.55
DDB1-217ENST00000540166 ATP7AQ04656 1500 aa11.59□□□□□ -0.55
DDB1-217ENST00000540166 RRBP1Q9P2E9 1410 aaKnown RBP11.59□□□□□ -0.55
DDB1-217ENST00000540166 ZNF335Q9H4Z2 1342 aaPredicted RBP11.58□□□□□ -0.55
DDB1-217ENST00000540166 MADDQ8WXG6 1647 aa11.58□□□□□ -0.56
DDB1-217ENST00000540166 TIMELESSQ9UNS1 1208 aa11.58□□□□□ -0.56
DDB1-217ENST00000540166 PPM1GO15355 546 aaPredicted RBP11.58□□□□□ -0.56
DDB1-217ENST00000540166 RTEL1-TNFRSF6BF6WH68 1400 aa11.57□□□□□ -0.56
DDB1-217ENST00000540166 LMOD2Q6P5Q4 547 aa11.57□□□□□ -0.56
DDB1-217ENST00000540166 FGD6Q6ZV73 1430 aa11.56□□□□□ -0.56
DDB1-217ENST00000540166 TIAM1Q13009 1591 aa11.55□□□□□ -0.56
DDB1-217ENST00000540166 SETD1BQ9UPS6 1966 aaKnown RBP11.55□□□□□ -0.56
DDB1-217ENST00000540166 ABCC1P33527 1531 aa11.54□□□□□ -0.56
DDB1-217ENST00000540166 ANKRD50Q9ULJ7 1429 aa11.54□□□□□ -0.56
DDB1-217ENST00000540166 PPRC1Q5VV67 1664 aaKnown RBP11.54□□□□□ -0.56
DDB1-217ENST00000540166 IDI1Q13907 227 aa11.54□□□□□ -0.56
DDB1-217ENST00000540166 ITSN2Q9NZM3 1697 aa11.53□□□□□ -0.56
DDB1-217ENST00000540166 A0A0G2JS52 829 aa11.53□□□□□ -0.56
DDB1-217ENST00000540166 RBM33Q96EV2 1170 aaKnown RBP11.52□□□□□ -0.57
DDB1-217ENST00000540166 MRS2Q9HD23 443 aa11.52□□□□□ -0.57
DDB1-217ENST00000540166 STK26Q9P289 416 aa11.52□□□□□ -0.57
DDB1-217ENST00000540166 PKNOX2Q96KN3 472 aa11.52□□□□□ -0.57
DDB1-217ENST00000540166 KDM2AQ9Y2K7 1162 aa11.52□□□□□ -0.57
DDB1-217ENST00000540166 POGKQ9P215 609 aa11.51□□□□□ -0.57
DDB1-217ENST00000540166 USP35Q9P2H5 1018 aa11.51□□□□□ -0.57
DDB1-217ENST00000540166 SAMD9LQ8IVG5 1584 aa11.51□□□□□ -0.57
DDB1-217ENST00000540166 VGFO15240 615 aaPredicted RBP11.51□□□□□ -0.57
DDB1-217ENST00000540166 ARHGEF12Q9NZN5 1544 aa11.5□□□□□ -0.57
DDB1-217ENST00000540166 PREX2Q70Z35 1606 aa11.5□□□□□ -0.57
DDB1-217ENST00000540166 NUTM2BA6NNL0 878 aaPredicted RBP11.5□□□□□ -0.57
DDB1-217ENST00000540166 NUTM2EB1AL46 878 aaPredicted RBP11.5□□□□□ -0.57
DDB1-217ENST00000540166 EIF4G2P78344 907 aaKnown RBP eCLIP11.5□□□□□ -0.57
DDB1-217ENST00000540166 NUTM2AQ8IVF1 878 aaPredicted RBP11.5□□□□□ -0.57
DDB1-217ENST00000540166 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms