RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 COG6Q9Y2V7 657 aa16.68■□□□□ 0.26
MSH6-210ENST00000540021 KIAA1107Q9UPP5 1409 aa16.68■□□□□ 0.26
MSH6-210ENST00000540021 CDCA8Q53HL2 280 aa16.67■□□□□ 0.26
MSH6-210ENST00000540021 PRG4Q92954 1404 aaPredicted RBP16.67■□□□□ 0.26
MSH6-210ENST00000540021 ABCC5O15440 1437 aa16.67■□□□□ 0.26
MSH6-210ENST00000540021 CCDC144AA2RUR9 1427 aa16.66■□□□□ 0.26
MSH6-210ENST00000540021 SNAPC4Q5SXM2 1469 aa16.66■□□□□ 0.26
MSH6-210ENST00000540021 FTSJ3Q8IY81 847 aaKnown RBP16.66■□□□□ 0.26
MSH6-210ENST00000540021 DHX29Q7Z478 1369 aaKnown RBP16.65■□□□□ 0.26
MSH6-210ENST00000540021 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
MSH6-210ENST00000540021 DNAJC5BQ9UF47 199 aa16.64■□□□□ 0.25
MSH6-210ENST00000540021 GRIN2BQ13224 1484 aa16.63■□□□□ 0.25
MSH6-210ENST00000540021 BCAR3O75815 825 aa16.62■□□□□ 0.25
MSH6-210ENST00000540021 JPH4Q96JJ6 628 aa16.62■□□□□ 0.25
MSH6-210ENST00000540021 PANK1Q8TE04 598 aa16.61■□□□□ 0.25
MSH6-210ENST00000540021 UGGT2Q9NYU1 1516 aa16.6■□□□□ 0.25
MSH6-210ENST00000540021 MFAP1P55081 439 aaKnown RBP16.59■□□□□ 0.25
MSH6-210ENST00000540021 CENPJQ9HC77 1338 aaPredicted RBP16.59■□□□□ 0.25
MSH6-210ENST00000540021 TRIM44Q96DX7 344 aaPredicted RBP16.59■□□□□ 0.25
MSH6-210ENST00000540021 ROCK1Q13464 1354 aa16.58■□□□□ 0.24
MSH6-210ENST00000540021 HECW1Q76N89 1606 aa16.58■□□□□ 0.24
MSH6-210ENST00000540021 THOC2Q8NI27 1593 aaKnown RBP16.57■□□□□ 0.24
MSH6-210ENST00000540021 GLIPR1L2Q4G1C9 344 aa16.57■□□□□ 0.24
MSH6-210ENST00000540021 MORC1Q86VD1 984 aa16.57■□□□□ 0.24
MSH6-210ENST00000540021 KDM6BO15054 1643 aa16.57■□□□□ 0.24
MSH6-210ENST00000540021 CC2D2AQ9P2K1 1620 aa16.57■□□□□ 0.24
MSH6-210ENST00000540021 U2SURPO15042 1029 aaKnown RBP16.57■□□□□ 0.24
MSH6-210ENST00000540021 RNF123Q5XPI4 1314 aa16.56■□□□□ 0.24
MSH6-210ENST00000540021 PPP2R1AP30153 589 aa16.56■□□□□ 0.24
MSH6-210ENST00000540021 L1TD1Q5T7N2 865 aaKnown RBP16.56■□□□□ 0.24
MSH6-210ENST00000540021 ANP32BQ92688 251 aaKnown RBP16.56■□□□□ 0.24
MSH6-210ENST00000540021 CUL7Q14999 1698 aa16.55■□□□□ 0.24
MSH6-210ENST00000540021 SAFB2Q14151 953 aaKnown RBP eCLIP16.55■□□□□ 0.24
MSH6-210ENST00000540021 CARMIL2Q6F5E8 1435 aa16.53■□□□□ 0.24
MSH6-210ENST00000540021 NCLP19338 710 aaKnown RBP16.53■□□□□ 0.24
MSH6-210ENST00000540021 CFAP53Q96M91 514 aa16.53■□□□□ 0.24
MSH6-210ENST00000540021 FOXD4L1Q9NU39 408 aa16.53■□□□□ 0.24
MSH6-210ENST00000540021 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.24
MSH6-210ENST00000540021 POGKQ9P215 609 aa16.52■□□□□ 0.24
MSH6-210ENST00000540021 PNNQ9H307 717 aaKnown RBP16.52■□□□□ 0.23
MSH6-210ENST00000540021 MAGI3Q5TCQ9 1506 aa16.52■□□□□ 0.23
MSH6-210ENST00000540021 TEX14Q8IWB6 1497 aa16.51■□□□□ 0.23
MSH6-210ENST00000540021 E9PSI1 815 aa16.51■□□□□ 0.23
MSH6-210ENST00000540021 U2AF1L5P0DN76 240 aaPredicted RBP16.51■□□□□ 0.23
MSH6-210ENST00000540021 U2AF1Q01081 240 aaKnown RBP eCLIP16.51■□□□□ 0.23
MSH6-210ENST00000540021 SPATA31E1Q6ZUB1 1445 aa16.51■□□□□ 0.23
MSH6-210ENST00000540021 HSCBQ8IWL3 235 aa16.51■□□□□ 0.23
MSH6-210ENST00000540021 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
MSH6-210ENST00000540021 HSP90AB1P08238 724 aaKnown RBP16.5■□□□□ 0.23
MSH6-210ENST00000540021 C9orf84Q5VXU9 1444 aa16.49■□□□□ 0.23
MSH6-210ENST00000540021 ITPRIPQ8IWB1 547 aa16.49■□□□□ 0.23
MSH6-210ENST00000540021 RWDD1Q9H446 243 aaPredicted RBP16.49■□□□□ 0.23
MSH6-210ENST00000540021 CTTNBP2Q8WZ74 1663 aa16.48■□□□□ 0.23
MSH6-210ENST00000540021 CAMSAP2Q08AD1 1489 aa16.48■□□□□ 0.23
MSH6-210ENST00000540021 TROQ12816 1431 aaPredicted RBP16.48■□□□□ 0.23
MSH6-210ENST00000540021 CGNL1Q0VF96 1302 aa16.48■□□□□ 0.23
MSH6-210ENST00000540021 PMFBP1Q8TBY8 1022 aa16.47■□□□□ 0.23
MSH6-210ENST00000540021 MAPK8IP3Q9UPT6 1336 aa16.47■□□□□ 0.23
MSH6-210ENST00000540021 DUSP27Q5VZP5 1158 aa16.47■□□□□ 0.23
MSH6-210ENST00000540021 TCOF1Q13428 1488 aaKnown RBP16.47■□□□□ 0.23
MSH6-210ENST00000540021 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
MSH6-210ENST00000540021 IQGAP2Q13576 1575 aa16.46■□□□□ 0.22
MSH6-210ENST00000540021 DISP3Q9P2K9 1392 aa16.46■□□□□ 0.22
MSH6-210ENST00000540021 KDM5BQ9UGL1 1544 aa16.45■□□□□ 0.22
MSH6-210ENST00000540021 SMC4Q9NTJ3 1288 aa16.45■□□□□ 0.22
MSH6-210ENST00000540021 TPRNQ4KMQ1 711 aa16.45■□□□□ 0.22
MSH6-210ENST00000540021 TRAK1Q9UPV9 953 aa16.45■□□□□ 0.22
MSH6-210ENST00000540021 DENND4BO75064 1496 aaPredicted RBP16.45■□□□□ 0.22
MSH6-210ENST00000540021 NUTM2DQ5VT03 806 aaPredicted RBP16.44■□□□□ 0.22
MSH6-210ENST00000540021 SLC24A1O60721 1099 aa16.44■□□□□ 0.22
MSH6-210ENST00000540021 PLB1Q6P1J6 1458 aa16.44■□□□□ 0.22
MSH6-210ENST00000540021 LRPPRCP42704 1394 aaKnown RBP16.43■□□□□ 0.22
MSH6-210ENST00000540021 C8orf34Q49A92 452 aa16.43■□□□□ 0.22
MSH6-210ENST00000540021 ERBINQ96RT1 1412 aa16.43■□□□□ 0.22
MSH6-210ENST00000540021 SLFN5Q08AF3 891 aa16.42■□□□□ 0.22
MSH6-210ENST00000540021 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
MSH6-210ENST00000540021 IGHDP01880 384 aa16.42■□□□□ 0.22
MSH6-210ENST00000540021 PZPP20742 1482 aa16.42■□□□□ 0.22
MSH6-210ENST00000540021 WASHC2CQ9Y4E1 1318 aa16.41■□□□□ 0.22
MSH6-210ENST00000540021 KIF3BO15066 747 aa16.41■□□□□ 0.22
MSH6-210ENST00000540021 PER1O15534 1290 aaPredicted RBP16.4■□□□□ 0.22
MSH6-210ENST00000540021 GOLGA6L22H0YM25 854 aa16.4■□□□□ 0.22
MSH6-210ENST00000540021 MYH16Q9H6N6 1097 aa16.4■□□□□ 0.22
MSH6-210ENST00000540021 PDZRN3Q9UPQ7 1066 aa16.4■□□□□ 0.22
MSH6-210ENST00000540021 PARD3Q8TEW0 1356 aa16.39■□□□□ 0.21
MSH6-210ENST00000540021 ZBTB7CA1YPR0 619 aa16.39■□□□□ 0.21
MSH6-210ENST00000540021 RSPH4AQ5TD94 716 aa16.39■□□□□ 0.21
MSH6-210ENST00000540021 ARID3AQ99856 593 aa16.39■□□□□ 0.21
MSH6-210ENST00000540021 APBB1O00213 710 aa16.38■□□□□ 0.21
MSH6-210ENST00000540021 CFAP70Q5T0N1 1121 aa16.38■□□□□ 0.21
MSH6-210ENST00000540021 STK26Q9P289 416 aa16.38■□□□□ 0.21
MSH6-210ENST00000540021 ARHGEF11O15085 1522 aa16.38■□□□□ 0.21
MSH6-210ENST00000540021 SEC24BO95487 1268 aa16.37■□□□□ 0.21
MSH6-210ENST00000540021 PLEKHH1Q9ULM0 1364 aa16.37■□□□□ 0.21
MSH6-210ENST00000540021 RALGAPBQ86X10 1494 aa16.37■□□□□ 0.21
MSH6-210ENST00000540021 FAM43AQ8N2R8 423 aa16.37■□□□□ 0.21
MSH6-210ENST00000540021 TCP11L2Q8N4U5 519 aa16.37■□□□□ 0.21
MSH6-210ENST00000540021 SPINK5Q9NQ38 1064 aaPredicted RBP16.36■□□□□ 0.21
MSH6-210ENST00000540021 EFCAB2Q5VUJ9 269 aa16.36■□□□□ 0.21
MSH6-210ENST00000540021 C22orf23Q9BZE7 217 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms