RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 CDC42BPBQ9Y5S2 1711 aa27.29■■□□□ 1.96
TMEM260-203ENST00000539559 ZCCHC11Q5TAX3 1644 aaKnown RBP27.29■■□□□ 1.96
TMEM260-203ENST00000539559 C9orf84Q5VXU9 1444 aa27.29■■□□□ 1.96
TMEM260-203ENST00000539559 KDM5CP41229 1560 aa27.28■■□□□ 1.96
TMEM260-203ENST00000539559 ST20-MTHFSA0A0A6YYL1 179 aa27.28■■□□□ 1.96
TMEM260-203ENST00000539559 ANP32AP39687 249 aaKnown RBP27.28■■□□□ 1.96
TMEM260-203ENST00000539559 HNRNPMP52272 730 aaKnown RBP eCLIP27.28■■□□□ 1.96
TMEM260-203ENST00000539559 ARHGEF5Q12774 1597 aa27.27■■□□□ 1.96
TMEM260-203ENST00000539559 TTC37Q6PGP7 1564 aa27.27■■□□□ 1.96
TMEM260-203ENST00000539559 IPO9Q96P70 1041 aaKnown RBP27.26■■□□□ 1.95
TMEM260-203ENST00000539559 RSPH4AQ5TD94 716 aa27.25■■□□□ 1.95
TMEM260-203ENST00000539559 SAMD9LQ8IVG5 1584 aa27.25■■□□□ 1.95
TMEM260-203ENST00000539559 NPM2Q86SE8 214 aaKnown RBP27.24■■□□□ 1.95
TMEM260-203ENST00000539559 ARHGAP5Q13017 1502 aa27.23■■□□□ 1.95
TMEM260-203ENST00000539559 OSCARQ8IYS5 282 aa27.23■■□□□ 1.95
TMEM260-203ENST00000539559 EXOC6Q8TAG9 804 aa27.23■■□□□ 1.95
TMEM260-203ENST00000539559 ANKRD50Q9ULJ7 1429 aa27.23■■□□□ 1.95
TMEM260-203ENST00000539559 MYT1LQ9UL68 1186 aa27.22■■□□□ 1.95
TMEM260-203ENST00000539559 NUP155O75694 1391 aa27.21■■□□□ 1.95
TMEM260-203ENST00000539559 CCDC141Q6ZP82 1450 aa27.21■■□□□ 1.95
TMEM260-203ENST00000539559 DCAF11Q8TEB1 546 aa27.2■■□□□ 1.95
TMEM260-203ENST00000539559 ZBTB47Q9UFB7 747 aaPredicted RBP27.2■■□□□ 1.95
TMEM260-203ENST00000539559 MYO5CQ9NQX4 1742 aa27.19■■□□□ 1.94
TMEM260-203ENST00000539559 KIF15Q9NS87 1388 aa27.18■■□□□ 1.94
TMEM260-203ENST00000539559 RRP1P56182 461 aaKnown RBP27.16■■□□□ 1.94
TMEM260-203ENST00000539559 ARID4BQ4LE39 1312 aaPredicted RBP27.15■■□□□ 1.94
TMEM260-203ENST00000539559 PLEKHH2Q8IVE3 1493 aa27.15■■□□□ 1.94
TMEM260-203ENST00000539559 MYBBP1AQ9BQG0 1328 aaKnown RBP27.14■■□□□ 1.94
TMEM260-203ENST00000539559 PLCH2O75038 1416 aa27.14■■□□□ 1.94
TMEM260-203ENST00000539559 RALGAPBQ86X10 1494 aa27.14■■□□□ 1.94
TMEM260-203ENST00000539559 SYCP2Q9BX26 1530 aa27.14■■□□□ 1.93
TMEM260-203ENST00000539559 LRPPRCP42704 1394 aaKnown RBP27.14■■□□□ 1.93
TMEM260-203ENST00000539559 ROCK2O75116 1388 aaKnown RBP27.13■■□□□ 1.93
TMEM260-203ENST00000539559 RCAN3Q9UKA8 241 aa27.12■■□□□ 1.93
TMEM260-203ENST00000539559 CDCA7LQ96GN5 454 aa27.11■■□□□ 1.93
TMEM260-203ENST00000539559 SKAP1Q86WV1 359 aa27.1■■□□□ 1.93
TMEM260-203ENST00000539559 UHRF1BP1Q6BDS2 1440 aa27.1■■□□□ 1.93
TMEM260-203ENST00000539559 EFCAB2Q5VUJ9 269 aa27.1■■□□□ 1.93
TMEM260-203ENST00000539559 BRD4O60885 1362 aaPredicted RBP27.08■■□□□ 1.93
TMEM260-203ENST00000539559 PLIN1O60240 522 aa27.07■■□□□ 1.92
TMEM260-203ENST00000539559 RTL5Q5HYW3 569 aaPredicted RBP27.07■■□□□ 1.92
TMEM260-203ENST00000539559 RALBP1Q15311 655 aa27.06■■□□□ 1.92
TMEM260-203ENST00000539559 WDR7Q9Y4E6 1490 aa27.06■■□□□ 1.92
TMEM260-203ENST00000539559 RGL3Q3MIN7 710 aa27.05■■□□□ 1.92
TMEM260-203ENST00000539559 MAST1Q9Y2H9 1570 aa27.05■■□□□ 1.92
TMEM260-203ENST00000539559 LAS1LQ9Y4W2 734 aaKnown RBP27.04■■□□□ 1.92
TMEM260-203ENST00000539559 NBPF1Q3BBV0 1214 aa27.02■■□□□ 1.92
TMEM260-203ENST00000539559 CC2D1BQ5T0F9 858 aaKnown RBP27.02■■□□□ 1.92
TMEM260-203ENST00000539559 PDE4AP27815 886 aa27.01■■□□□ 1.91
TMEM260-203ENST00000539559 KDM5DQ9BY66 1539 aa27■■□□□ 1.91
TMEM260-203ENST00000539559 ARHGEF12Q9NZN5 1544 aa27■■□□□ 1.91
TMEM260-203ENST00000539559 ARAP3Q8WWN8 1544 aa26.99■■□□□ 1.91
TMEM260-203ENST00000539559 NLRP13Q86W25 1043 aa26.99■■□□□ 1.91
TMEM260-203ENST00000539559 ABCC1P33527 1531 aa26.96■■□□□ 1.91
TMEM260-203ENST00000539559 KTN1Q86UP2 1357 aaKnown RBP26.96■■□□□ 1.91
TMEM260-203ENST00000539559 TCERG1O14776 1098 aaKnown RBP26.95■■□□□ 1.91
TMEM260-203ENST00000539559 PLXNC1O60486 1568 aa26.95■■□□□ 1.91
TMEM260-203ENST00000539559 NPM1P06748 294 aaKnown RBP eCLIP26.94■■□□□ 1.9
TMEM260-203ENST00000539559 ASXL2Q76L83 1435 aa26.94■■□□□ 1.9
TMEM260-203ENST00000539559 E9PCH4 1651 aa26.92■■□□□ 1.9
TMEM260-203ENST00000539559 PARD3Q8TEW0 1356 aa26.92■■□□□ 1.9
TMEM260-203ENST00000539559 BACH2Q9BYV9 841 aa26.92■■□□□ 1.9
TMEM260-203ENST00000539559 PER1O15534 1290 aaPredicted RBP26.92■■□□□ 1.9
TMEM260-203ENST00000539559 CRBNQ96SW2 442 aa26.9■■□□□ 1.9
TMEM260-203ENST00000539559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.9■■□□□ 1.9
TMEM260-203ENST00000539559 ABCA9Q8IUA7 1624 aa26.9■■□□□ 1.9
TMEM260-203ENST00000539559 TRAPPC8Q9Y2L5 1435 aa26.9■■□□□ 1.9
TMEM260-203ENST00000539559 DUOX2Q9NRD8 1548 aa26.88■■□□□ 1.89
TMEM260-203ENST00000539559 NEFMP07197 916 aa26.87■■□□□ 1.89
TMEM260-203ENST00000539559 FANCAO15360 1455 aa26.86■■□□□ 1.89
TMEM260-203ENST00000539559 FAM135AQ9P2D6 1515 aa26.86■■□□□ 1.89
TMEM260-203ENST00000539559 DISP3Q9P2K9 1392 aa26.86■■□□□ 1.89
TMEM260-203ENST00000539559 PANK3Q9H999 370 aa26.86■■□□□ 1.89
TMEM260-203ENST00000539559 C20orf194Q5TEA3 1177 aa26.85■■□□□ 1.89
TMEM260-203ENST00000539559 PDE3BQ13370 1112 aa26.85■■□□□ 1.89
TMEM260-203ENST00000539559 SPAG9O60271 1321 aaKnown RBP26.84■■□□□ 1.89
TMEM260-203ENST00000539559 PRAG1Q86YV5 1406 aa26.84■■□□□ 1.89
TMEM260-203ENST00000539559 ERBINQ96RT1 1412 aa26.84■■□□□ 1.89
TMEM260-203ENST00000539559 UNC13BO14795 1591 aa26.84■■□□□ 1.89
TMEM260-203ENST00000539559 IL27Q8NEV9 243 aa26.83■■□□□ 1.89
TMEM260-203ENST00000539559 AFAP1Q8N556 730 aa26.82■■□□□ 1.88
TMEM260-203ENST00000539559 RTEL1-TNFRSF6BF6WH68 1400 aa26.82■■□□□ 1.88
TMEM260-203ENST00000539559 CCDC144AA2RUR9 1427 aa26.81■■□□□ 1.88
TMEM260-203ENST00000539559 RTN4Q9NQC3 1192 aaKnown RBP26.8■■□□□ 1.88
TMEM260-203ENST00000539559 TESK2Q96S53 571 aa26.79■■□□□ 1.88
TMEM260-203ENST00000539559 TRPM1Q7Z4N2 1603 aa26.78■■□□□ 1.88
TMEM260-203ENST00000539559 MS4A1P11836 297 aa26.77■■□□□ 1.88
TMEM260-203ENST00000539559 SLC4A3P48751 1232 aa26.77■■□□□ 1.88
TMEM260-203ENST00000539559 ADGRL1O94910 1474 aa26.76■■□□□ 1.87
TMEM260-203ENST00000539559 ADAMTS8Q9UP79 889 aa26.75■■□□□ 1.87
TMEM260-203ENST00000539559 ZFYVE16Q7Z3T8 1539 aa26.75■■□□□ 1.87
TMEM260-203ENST00000539559 SCAPERQ9BY12 1400 aa26.74■■□□□ 1.87
TMEM260-203ENST00000539559 IQGAP3Q86VI3 1631 aa26.74■■□□□ 1.87
TMEM260-203ENST00000539559 A2MP01023 1474 aa26.73■■□□□ 1.87
TMEM260-203ENST00000539559 MAGI2Q86UL8 1455 aa26.73■■□□□ 1.87
TMEM260-203ENST00000539559 PLA2R1Q13018 1463 aa26.73■■□□□ 1.87
TMEM260-203ENST00000539559 COL17A1Q9UMD9 1497 aaPredicted RBP26.72■■□□□ 1.87
TMEM260-203ENST00000539559 BLMP54132 1417 aaPredicted RBP26.71■■□□□ 1.87
TMEM260-203ENST00000539559 ATP7AQ04656 1500 aa26.68■■□□□ 1.86
TMEM260-203ENST00000539559 CD109Q6YHK3 1445 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms