RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 UNC13BO14795 1591 aa34.21■■■■□ 3.07
RAB40C-204ENST00000538492 CCDC144AA2RUR9 1427 aa34.21■■■■□ 3.07
RAB40C-204ENST00000538492 PLXNC1O60486 1568 aa34.19■■■■□ 3.06
RAB40C-204ENST00000538492 ST20-MTHFSA0A0A6YYL1 179 aa34.17■■■■□ 3.06
RAB40C-204ENST00000538492 PLCH2O75038 1416 aa34.17■■■■□ 3.06
RAB40C-204ENST00000538492 RGL3Q3MIN7 710 aa34.17■■■■□ 3.06
RAB40C-204ENST00000538492 ARID4BQ4LE39 1312 aaPredicted RBP34.17■■■■□ 3.06
RAB40C-204ENST00000538492 ROCK2O75116 1388 aaKnown RBP34.14■■■■□ 3.06
RAB40C-204ENST00000538492 EFCAB2Q5VUJ9 269 aa34.14■■■■□ 3.06
RAB40C-204ENST00000538492 PLA2R1Q13018 1463 aa34.13■■■■□ 3.05
RAB40C-204ENST00000538492 UHRF1BP1LA0JNW5 1464 aa34.13■■■■□ 3.05
RAB40C-204ENST00000538492 DUOX2Q9NRD8 1548 aa34.11■■■■□ 3.05
RAB40C-204ENST00000538492 IRX6P78412 446 aaPredicted RBP34.1■■■■□ 3.05
RAB40C-204ENST00000538492 IQGAP3Q86VI3 1631 aa34.1■■■■□ 3.05
RAB40C-204ENST00000538492 PRAG1Q86YV5 1406 aa34.06■■■■□ 3.04
RAB40C-204ENST00000538492 TRAPPC8Q9Y2L5 1435 aa34.06■■■■□ 3.04
RAB40C-204ENST00000538492 ZBED9Q6R2W3 1325 aa34.05■■■■□ 3.04
RAB40C-204ENST00000538492 ABCC1P33527 1531 aa34.05■■■■□ 3.04
RAB40C-204ENST00000538492 ERBINQ96RT1 1412 aa34.03■■■■□ 3.04
RAB40C-204ENST00000538492 TRPM1Q7Z4N2 1603 aa34.03■■■■□ 3.04
RAB40C-204ENST00000538492 A2MP01023 1474 aa34.01■■■■□ 3.04
RAB40C-204ENST00000538492 NBPF1Q3BBV0 1214 aa34.01■■■■□ 3.04
RAB40C-204ENST00000538492 MAGI2Q86UL8 1455 aa33.98■■■■□ 3.03
RAB40C-204ENST00000538492 AFAP1Q8N556 730 aa33.97■■■■□ 3.03
RAB40C-204ENST00000538492 SPAG9O60271 1321 aaKnown RBP33.94■■■■□ 3.02
RAB40C-204ENST00000538492 ATP10AO60312 1499 aa33.89■■■■□ 3.02
RAB40C-204ENST00000538492 TMC1Q8TDI8 760 aa33.87■■■■□ 3.01
RAB40C-204ENST00000538492 E9PCH4 1651 aa33.86■■■■□ 3.01
RAB40C-204ENST00000538492 GPRASP1Q5JY77 1395 aa33.86■■■■□ 3.01
RAB40C-204ENST00000538492 SENP3-EIF4A1A0A087X0R7 540 aa33.85■■■■□ 3.01
RAB40C-204ENST00000538492 WDR7Q9Y4E6 1490 aa33.85■■■■□ 3.01
RAB40C-204ENST00000538492 ZFYVE16Q7Z3T8 1539 aa33.84■■■■□ 3.01
RAB40C-204ENST00000538492 PNISRQ8TF01 805 aaKnown RBP33.83■■■■□ 3.01
RAB40C-204ENST00000538492 ARAP3Q8WWN8 1544 aa33.83■■■■□ 3.01
RAB40C-204ENST00000538492 RTEL1-TNFRSF6BF6WH68 1400 aa33.8■■■■□ 3
RAB40C-204ENST00000538492 PRDM15P57071 1507 aaPredicted RBP33.8■■■■□ 3
RAB40C-204ENST00000538492 EIF2AK4Q9P2K8 1649 aaKnown RBP33.79■■■■□ 3
RAB40C-204ENST00000538492 FANCAO15360 1455 aa33.78■■■■□ 3
RAB40C-204ENST00000538492 LAMC1P11047 1609 aa33.77■■■■□ 3
RAB40C-204ENST00000538492 MYBBP1AQ9BQG0 1328 aaKnown RBP33.77■■■■□ 3
RAB40C-204ENST00000538492 RALBP1Q15311 655 aa33.76■■■■□ 3
RAB40C-204ENST00000538492 TESK2Q96S53 571 aa33.75■■■□□ 2.99
RAB40C-204ENST00000538492 MYT1LQ9UL68 1186 aa33.75■■■□□ 2.99
RAB40C-204ENST00000538492 DISP3Q9P2K9 1392 aa33.75■■■□□ 2.99
RAB40C-204ENST00000538492 COL17A1Q9UMD9 1497 aaPredicted RBP33.73■■■□□ 2.99
RAB40C-204ENST00000538492 ABCA9Q8IUA7 1624 aa33.73■■■□□ 2.99
RAB40C-204ENST00000538492 KTN1Q86UP2 1357 aaKnown RBP33.72■■■□□ 2.99
RAB40C-204ENST00000538492 ERICH6BQ5W0A0 696 aa33.72■■■□□ 2.99
RAB40C-204ENST00000538492 ATP7AQ04656 1500 aa33.71■■■□□ 2.99
RAB40C-204ENST00000538492 BRD4O60885 1362 aaPredicted RBP33.71■■■□□ 2.99
RAB40C-204ENST00000538492 SMG6Q86US8 1419 aaKnown RBP33.7■■■□□ 2.98
RAB40C-204ENST00000538492 PPP4R2Q9NY27 417 aa33.69■■■□□ 2.98
RAB40C-204ENST00000538492 ADGRL1O94910 1474 aa33.67■■■□□ 2.98
RAB40C-204ENST00000538492 SCAPERQ9BY12 1400 aa33.67■■■□□ 2.98
RAB40C-204ENST00000538492 DEPDC5O75140 1603 aa33.67■■■□□ 2.98
RAB40C-204ENST00000538492 INO80Q9ULG1 1556 aaPredicted RBP33.67■■■□□ 2.98
RAB40C-204ENST00000538492 PER1O15534 1290 aaPredicted RBP33.67■■■□□ 2.98
RAB40C-204ENST00000538492 TRPM2O94759 1503 aa33.66■■■□□ 2.98
RAB40C-204ENST00000538492 RBM19Q9Y4C8 960 aaKnown RBP33.66■■■□□ 2.98
RAB40C-204ENST00000538492 SPHKAPQ2M3C7 1700 aa33.66■■■□□ 2.98
RAB40C-204ENST00000538492 KIF3BO15066 747 aa33.66■■■□□ 2.98
RAB40C-204ENST00000538492 NUDCQ9Y266 331 aa33.66■■■□□ 2.98
RAB40C-204ENST00000538492 ASXL2Q76L83 1435 aa33.65■■■□□ 2.98
RAB40C-204ENST00000538492 RNF17Q9BXT8 1623 aaKnown RBP33.64■■■□□ 2.98
RAB40C-204ENST00000538492 LRPPRCP42704 1394 aaKnown RBP33.64■■■□□ 2.98
RAB40C-204ENST00000538492 PARD3Q8TEW0 1356 aa33.63■■■□□ 2.97
RAB40C-204ENST00000538492 TMF1P82094 1093 aa33.63■■■□□ 2.97
RAB40C-204ENST00000538492 CLTCL1P53675 1640 aa33.62■■■□□ 2.97
RAB40C-204ENST00000538492 MADDQ8WXG6 1647 aa33.62■■■□□ 2.97
RAB40C-204ENST00000538492 CEP152O94986 1710 aa33.61■■■□□ 2.97
RAB40C-204ENST00000538492 PTPRTO14522 1441 aa33.61■■■□□ 2.97
RAB40C-204ENST00000538492 TET3O43151 1660 aa33.6■■■□□ 2.97
RAB40C-204ENST00000538492 KANK1Q14678 1352 aa33.6■■■□□ 2.97
RAB40C-204ENST00000538492 CC2D1BQ5T0F9 858 aaKnown RBP33.6■■■□□ 2.97
RAB40C-204ENST00000538492 NLRP13Q86W25 1043 aa33.6■■■□□ 2.97
RAB40C-204ENST00000538492 PANK3Q9H999 370 aa33.6■■■□□ 2.97
RAB40C-204ENST00000538492 B4GALNT3Q6L9W6 998 aa33.57■■■□□ 2.96
RAB40C-204ENST00000538492 VWDEQ8N2E2 1590 aa33.53■■■□□ 2.96
RAB40C-204ENST00000538492 IQGAP1P46940 1657 aa33.5■■■□□ 2.95
RAB40C-204ENST00000538492 SALL2Q9Y467 1007 aaPredicted RBP33.49■■■□□ 2.95
RAB40C-204ENST00000538492 WASHC2CQ9Y4E1 1318 aa33.49■■■□□ 2.95
RAB40C-204ENST00000538492 MROH1Q8NDA8 1641 aa33.48■■■□□ 2.95
RAB40C-204ENST00000538492 UGGT1Q9NYU2 1555 aa33.46■■■□□ 2.95
RAB40C-204ENST00000538492 NPM1P06748 294 aaKnown RBP eCLIP33.46■■■□□ 2.95
RAB40C-204ENST00000538492 KIDINS220Q9ULH0 1771 aa33.45■■■□□ 2.95
RAB40C-204ENST00000538492 RNF123Q5XPI4 1314 aa33.44■■■□□ 2.94
RAB40C-204ENST00000538492 STAC3Q96MF2 364 aa33.43■■■□□ 2.94
RAB40C-204ENST00000538492 SCAF11Q99590 1463 aaKnown RBP33.43■■■□□ 2.94
RAB40C-204ENST00000538492 OSCARQ8IYS5 282 aa33.42■■■□□ 2.94
RAB40C-204ENST00000538492 ZNF518AQ6AHZ1 1483 aa33.38■■■□□ 2.93
RAB40C-204ENST00000538492 EFCAB6Q5THR3 1501 aa33.35■■■□□ 2.93
RAB40C-204ENST00000538492 CFAP70Q5T0N1 1121 aa33.33■■■□□ 2.93
RAB40C-204ENST00000538492 PPRC1Q5VV67 1664 aaKnown RBP33.33■■■□□ 2.93
RAB40C-204ENST00000538492 KNSTRNQ9Y448 316 aa33.33■■■□□ 2.93
RAB40C-204ENST00000538492 CD109Q6YHK3 1445 aa33.32■■■□□ 2.93
RAB40C-204ENST00000538492 KIF1BO60333 1816 aa33.32■■■□□ 2.92
RAB40C-204ENST00000538492 ADGRF5Q8IZF2 1346 aa33.32■■■□□ 2.92
RAB40C-204ENST00000538492 MYT1Q01538 1121 aa33.32■■■□□ 2.92
RAB40C-204ENST00000538492 CDCA8Q53HL2 280 aa33.31■■■□□ 2.92
RAB40C-204ENST00000538492 EIF3AQ14152 1382 aaKnown RBP33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms