RNA–Protein interactions for RNA: ENST00000536634.5

CLIP1-207, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-207ENST00000536634 PSEN2P49810 448 aa13.13□□□□□ -0.31
CLIP1-207ENST00000536634 EN1Q05925 392 aaPredicted RBP13.13□□□□□ -0.31
CLIP1-207ENST00000536634 KCNK17Q96T54 332 aa13.13□□□□□ -0.31
CLIP1-207ENST00000536634 PBX2P40425 430 aa13.12□□□□□ -0.31
CLIP1-207ENST00000536634 ARHGAP33O14559 1287 aa13.11□□□□□ -0.31
CLIP1-207ENST00000536634 TSR1Q2NL82 804 aaKnown RBP13.1□□□□□ -0.31
CLIP1-207ENST00000536634 MAP3K7O43318 606 aa13.09□□□□□ -0.31
CLIP1-207ENST00000536634 PTPREP23469 700 aa13.09□□□□□ -0.31
CLIP1-207ENST00000536634 DMRTA1Q5VZB9 504 aa13.09□□□□□ -0.31
CLIP1-207ENST00000536634 C6orf132Q5T0Z8 1188 aa13.08□□□□□ -0.32
CLIP1-207ENST00000536634 COL9A1P20849 921 aa13.07□□□□□ -0.32
CLIP1-207ENST00000536634 LSM11P83369 360 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLIP1-207ENST00000536634 CDHR5Q9HBB8 845 aa13.05□□□□□ -0.32
CLIP1-207ENST00000536634 RBM26Q5T8P6 1007 aaKnown RBP13.04□□□□□ -0.32
CLIP1-207ENST00000536634 RNF166Q96A37 237 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-207ENST00000536634 PPP1R3GB7ZBB8 358 aa13.02□□□□□ -0.33
CLIP1-207ENST00000536634 SMYD5Q6GMV2 418 aa13.02□□□□□ -0.33
CLIP1-207ENST00000536634 ANKRD13DQ6ZTN6 518 aa13.02□□□□□ -0.33
CLIP1-207ENST00000536634 KCNH8Q96L42 1107 aa13.02□□□□□ -0.33
CLIP1-207ENST00000536634 ZBED2Q9BTP6 218 aa12.99□□□□□ -0.33
CLIP1-207ENST00000536634 PROX2Q3B8N5 592 aa12.97□□□□□ -0.33
CLIP1-207ENST00000536634 NPDC1Q9NQX5 325 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-207ENST00000536634 NUTM2FA1L443 756 aa12.96□□□□□ -0.33
CLIP1-207ENST00000536634 ADGRD1Q6QNK2 874 aa12.96□□□□□ -0.33
CLIP1-207ENST00000536634 VPS9D1Q9Y2B5 631 aa12.95□□□□□ -0.34
CLIP1-207ENST00000536634 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
CLIP1-207ENST00000536634 TK2O00142 265 aa12.93□□□□□ -0.34
CLIP1-207ENST00000536634 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLIP1-207ENST00000536634 SLC4A5Q9BY07 1137 aa12.93□□□□□ -0.34
CLIP1-207ENST00000536634 PTGDRQ13258 359 aa12.92□□□□□ -0.34
CLIP1-207ENST00000536634 BCANQ96GW7 911 aa12.92□□□□□ -0.34
CLIP1-207ENST00000536634 TULP1O00294 542 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-207ENST00000536634 GPR37O15354 613 aa12.9□□□□□ -0.34
CLIP1-207ENST00000536634 HRO43593 1189 aa12.9□□□□□ -0.34
CLIP1-207ENST00000536634 CERKQ8TCT0 537 aa12.9□□□□□ -0.34
CLIP1-207ENST00000536634 PRSS12P56730 875 aa12.89□□□□□ -0.35
CLIP1-207ENST00000536634 LMOD2Q6P5Q4 547 aa12.89□□□□□ -0.35
CLIP1-207ENST00000536634 CDCA7LQ96GN5 454 aa12.89□□□□□ -0.35
CLIP1-207ENST00000536634 FAM198AQ9UFP1 575 aa12.89□□□□□ -0.35
CLIP1-207ENST00000536634 TSKSQ9UJT2 592 aa12.89□□□□□ -0.35
CLIP1-207ENST00000536634 TRIM6-TRIM34B2RNG4 842 aa12.88□□□□□ -0.35
CLIP1-207ENST00000536634 FCHSD2O94868 740 aa12.87□□□□□ -0.35
CLIP1-207ENST00000536634 GPIHBP1Q8IV16 184 aa12.87□□□□□ -0.35
CLIP1-207ENST00000536634 PADI6Q6TGC4 694 aa12.86□□□□□ -0.35
CLIP1-207ENST00000536634 KIAA1468Q9P260 1216 aa12.86□□□□□ -0.35
CLIP1-207ENST00000536634 BHMG1C9JSJ3 638 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-207ENST00000536634 TTC13Q8NBP0 860 aa12.84□□□□□ -0.35
CLIP1-207ENST00000536634 RABGEF1Q9UJ41 708 aa12.84□□□□□ -0.35
CLIP1-207ENST00000536634 C3orf80F5H4A9 247 aa12.83□□□□□ -0.36
CLIP1-207ENST00000536634 ONECUT3O60422 494 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-207ENST00000536634 RBM27Q9P2N5 1060 aaKnown RBP12.83□□□□□ -0.36
CLIP1-207ENST00000536634 NISCHQ9Y2I1 1504 aa12.83□□□□□ -0.36
CLIP1-207ENST00000536634 FECHP22830 423 aa12.8□□□□□ -0.36
CLIP1-207ENST00000536634 HIC1Q14526 733 aa12.8□□□□□ -0.36
CLIP1-207ENST00000536634 SEPT9Q9UHD8 586 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-207ENST00000536634 SMAPO00193 183 aa12.78□□□□□ -0.36
CLIP1-207ENST00000536634 GNPATO15228 680 aa12.78□□□□□ -0.36
CLIP1-207ENST00000536634 PACS2Q86VP3 889 aa12.78□□□□□ -0.36
CLIP1-207ENST00000536634 MRPL50Q8N5N7 158 aaKnown RBP12.77□□□□□ -0.37
CLIP1-207ENST00000536634 NBPF3Q9H094 633 aa12.77□□□□□ -0.37
CLIP1-207ENST00000536634 FAM161AQ3B820 660 aa12.76□□□□□ -0.37
CLIP1-207ENST00000536634 NUDT18Q6ZVK8 323 aa12.75□□□□□ -0.37
CLIP1-207ENST00000536634 TATDN2Q93075 761 aa12.75□□□□□ -0.37
CLIP1-207ENST00000536634 STAC3Q96MF2 364 aa12.75□□□□□ -0.37
CLIP1-207ENST00000536634 PNMA3Q9UL41 463 aa12.75□□□□□ -0.37
CLIP1-207ENST00000536634 NBPF26B4DH59 902 aa12.74□□□□□ -0.37
CLIP1-207ENST00000536634 ZC3H15Q8WU90 426 aaKnown RBP12.74□□□□□ -0.37
CLIP1-207ENST00000536634 ADGRG1Q9Y653 693 aa12.73□□□□□ -0.37
CLIP1-207ENST00000536634 FAM98CQ17RN3 349 aaKnown RBP12.7□□□□□ -0.38
CLIP1-207ENST00000536634 LAPTM4BQ86VI4 370 aa12.7□□□□□ -0.38
CLIP1-207ENST00000536634 EYA1Q99502 592 aa12.69□□□□□ -0.38
CLIP1-207ENST00000536634 GOLGA8CPA6NN73 597 aa12.67□□□□□ -0.38
CLIP1-207ENST00000536634 ZMYND10O75800 440 aa12.67□□□□□ -0.38
CLIP1-207ENST00000536634 KCTD12Q96CX2 325 aaKnown RBP12.67□□□□□ -0.38
CLIP1-207ENST00000536634 ZFRQ96KR1 1074 aaKnown RBP12.67□□□□□ -0.38
CLIP1-207ENST00000536634 MAP2K5Q13163 448 aa12.65□□□□□ -0.38
CLIP1-207ENST00000536634 WNT2BQ93097 391 aa12.65□□□□□ -0.38
CLIP1-207ENST00000536634 BARGINQ6ZT62 677 aa12.64□□□□□ -0.39
CLIP1-207ENST00000536634 RBM46Q8TBY0 533 aaKnown RBP12.64□□□□□ -0.39
CLIP1-207ENST00000536634 METTL3Q86U44 580 aaKnown RBP12.63□□□□□ -0.39
CLIP1-207ENST00000536634 PXYLP1Q8TE99 480 aa12.63□□□□□ -0.39
CLIP1-207ENST00000536634 IRF6O14896 467 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 OATP04181 439 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 BCAMP50895 628 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 SAMD7Q7Z3H4 446 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 ANKK1Q8NFD2 765 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 PHOX2BQ99453 314 aa12.61□□□□□ -0.39
CLIP1-207ENST00000536634 RCCD1A6NED2 376 aa12.6□□□□□ -0.39
CLIP1-207ENST00000536634 THSD4Q6ZMP0 1018 aa12.6□□□□□ -0.39
CLIP1-207ENST00000536634 CCDC102AQ96A19 550 aa12.6□□□□□ -0.39
CLIP1-207ENST00000536634 MINK1Q8N4C8 1332 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-207ENST00000536634 NLRP7Q8WX94 980 aa12.59□□□□□ -0.39
CLIP1-207ENST00000536634 SOWAHBA6NEL2 793 aa12.57□□□□□ -0.4
CLIP1-207ENST00000536634 DNAJB2P25686 324 aa12.57□□□□□ -0.4
CLIP1-207ENST00000536634 SWT1Q5T5J6 900 aaKnown RBP12.57□□□□□ -0.4
CLIP1-207ENST00000536634 KRI1Q8N9T8 703 aaKnown RBP12.57□□□□□ -0.4
CLIP1-207ENST00000536634 LRCH3Q96II8 777 aa12.57□□□□□ -0.4
CLIP1-207ENST00000536634 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-207ENST00000536634 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.55□□□□□ -0.4
CLIP1-207ENST00000536634 TMEM134Q9H6X4 195 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms