RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 SGIP1Q9BQI5 828 aa9.01□□□□□ -0.97
SYNE1-233ENST00000535896 NUP153P49790 1475 aaKnown RBP9.01□□□□□ -0.97
SYNE1-233ENST00000535896 TTLL13PA6NNM8 815 aa9□□□□□ -0.97
SYNE1-233ENST00000535896 SEC24BO95487 1268 aa9□□□□□ -0.97
SYNE1-233ENST00000535896 ZCCHC11Q5TAX3 1644 aaKnown RBP9□□□□□ -0.97
SYNE1-233ENST00000535896 IER5LQ5T953 404 aa8.99□□□□□ -0.97
SYNE1-233ENST00000535896 COLQQ9Y215 455 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-233ENST00000535896 CCER2I3L3R5 266 aa8.99□□□□□ -0.97
SYNE1-233ENST00000535896 TCOF1Q13428 1488 aaKnown RBP8.99□□□□□ -0.97
SYNE1-233ENST00000535896 SUPT16HQ9Y5B9 1047 aaKnown RBP8.99□□□□□ -0.97
SYNE1-233ENST00000535896 ATP10BO94823 1461 aa8.98□□□□□ -0.97
SYNE1-233ENST00000535896 MYOM3Q5VTT5 1437 aa8.98□□□□□ -0.97
SYNE1-233ENST00000535896 POLR1AO95602 1720 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-233ENST00000535896 EPRSP07814 1512 aaKnown RBP8.97□□□□□ -0.97
SYNE1-233ENST00000535896 PLCD3Q8N3E9 789 aa8.97□□□□□ -0.97
SYNE1-233ENST00000535896 WDR7Q9Y4E6 1490 aa8.96□□□□□ -0.97
SYNE1-233ENST00000535896 ASXL2Q76L83 1435 aa8.96□□□□□ -0.98
SYNE1-233ENST00000535896 NCOA2Q15596 1464 aa8.95□□□□□ -0.98
SYNE1-233ENST00000535896 ABCC10Q5T3U5 1492 aa8.95□□□□□ -0.98
SYNE1-233ENST00000535896 ZBTB47Q9UFB7 747 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-233ENST00000535896 TRIM35Q9UPQ4 493 aa8.95□□□□□ -0.98
SYNE1-233ENST00000535896 PCDHB13Q9Y5F0 798 aa8.95□□□□□ -0.98
SYNE1-233ENST00000535896 CDK11AQ9UQ88 783 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-233ENST00000535896 NAIPQ13075 1403 aa8.94□□□□□ -0.98
SYNE1-233ENST00000535896 MTUS2Q5JR59 1369 aa8.93□□□□□ -0.98
SYNE1-233ENST00000535896 DIP2BQ9P265 1576 aa8.93□□□□□ -0.98
SYNE1-233ENST00000535896 CDK13Q14004 1512 aaKnown RBP8.93□□□□□ -0.98
SYNE1-233ENST00000535896 ATP1B4Q9UN42 357 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-233ENST00000535896 MIA2Q96PC5 1412 aa8.93□□□□□ -0.98
SYNE1-233ENST00000535896 GLI2P10070 1586 aa8.93□□□□□ -0.98
SYNE1-233ENST00000535896 TONSLQ96HA7 1378 aa8.93□□□□□ -0.98
SYNE1-233ENST00000535896 PLEKHD1A6NEE1 506 aa8.92□□□□□ -0.98
SYNE1-233ENST00000535896 ARID3CA6NKF2 412 aa8.92□□□□□ -0.98
SYNE1-233ENST00000535896 PPP1R15AO75807 674 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-233ENST00000535896 FAM50AQ14320 339 aaKnown RBP8.91□□□□□ -0.98
SYNE1-233ENST00000535896 KIF13AQ9H1H9 1805 aa8.91□□□□□ -0.98
SYNE1-233ENST00000535896 TROQ12816 1431 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-233ENST00000535896 ITGAEP38570 1179 aa8.89□□□□□ -0.99
SYNE1-233ENST00000535896 NUBP1P53384 320 aa8.89□□□□□ -0.99
SYNE1-233ENST00000535896 FAM69CQ0P6D2 419 aa8.89□□□□□ -0.99
SYNE1-233ENST00000535896 CDAN1Q8IWY9 1227 aa8.89□□□□□ -0.99
SYNE1-233ENST00000535896 KIF14Q15058 1648 aa8.88□□□□□ -0.99
SYNE1-233ENST00000535896 ABCA9Q8IUA7 1624 aa8.88□□□□□ -0.99
SYNE1-233ENST00000535896 IFNL1Q8IU54 200 aa8.88□□□□□ -0.99
SYNE1-233ENST00000535896 DNMT1P26358 1616 aaKnown RBP8.88□□□□□ -0.99
SYNE1-233ENST00000535896 MAP3K4Q9Y6R4 1608 aa8.88□□□□□ -0.99
SYNE1-233ENST00000535896 ANP32CO43423 234 aa8.87□□□□□ -0.99
SYNE1-233ENST00000535896 SLAIN1Q8ND83 568 aa8.87□□□□□ -0.99
SYNE1-233ENST00000535896 ITSN2Q9NZM3 1697 aa8.87□□□□□ -0.99
SYNE1-233ENST00000535896 ADGBQ8N7X0 1667 aa8.87□□□□□ -0.99
SYNE1-233ENST00000535896 ROCK1Q13464 1354 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 KCNH8Q96L42 1107 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 TMEM106CQ9BVX2 250 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 MAGI3Q5TCQ9 1506 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 PTPRKQ15262 1439 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 NEFLP07196 543 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 FKBP8Q14318 412 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 AMER1Q5JTC6 1135 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-233ENST00000535896 FAM212AQ96EL1 285 aa8.86□□□□□ -0.99
SYNE1-233ENST00000535896 RTN4Q9NQC3 1192 aaKnown RBP8.86□□□□□ -0.99
SYNE1-233ENST00000535896 TEX14Q8IWB6 1497 aa8.85□□□□□ -0.99
SYNE1-233ENST00000535896 PLCG2P16885 1265 aa8.85□□□□□ -0.99
SYNE1-233ENST00000535896 ERICH6BQ5W0A0 696 aa8.85□□□□□ -0.99
SYNE1-233ENST00000535896 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.85□□□□□ -0.99
SYNE1-233ENST00000535896 CD109Q6YHK3 1445 aa8.84□□□□□ -0.99
SYNE1-233ENST00000535896 ARAP3Q8WWN8 1544 aa8.84□□□□□ -0.99
SYNE1-233ENST00000535896 CROCC2H7BZ55 1655 aa8.84□□□□□ -0.99
SYNE1-233ENST00000535896 SIN3AQ96ST3 1273 aa8.84□□□□□ -0.99
SYNE1-233ENST00000535896 TSHZ2Q9NRE2 1034 aa8.84□□□□□ -0.99
SYNE1-233ENST00000535896 TTC37Q6PGP7 1564 aa8.84□□□□□ -1
SYNE1-233ENST00000535896 ST18O60284 1047 aa8.83□□□□□ -1
SYNE1-233ENST00000535896 DDX10Q13206 875 aaKnown RBP8.83□□□□□ -1
SYNE1-233ENST00000535896 MYO5CQ9NQX4 1742 aa8.83□□□□□ -1
SYNE1-233ENST00000535896 PPRC1Q5VV67 1664 aaKnown RBP8.82□□□□□ -1
SYNE1-233ENST00000535896 CFAP74Q9C0B2 1584 aa8.82□□□□□ -1
SYNE1-233ENST00000535896 TSPOAP1O95153 1857 aa8.82□□□□□ -1
SYNE1-233ENST00000535896 PLCH2O75038 1416 aa8.81□□□□□ -1
SYNE1-233ENST00000535896 CNTLNQ9NXG0 1405 aa8.81□□□□□ -1
SYNE1-233ENST00000535896 DENND4BO75064 1496 aaPredicted RBP8.81□□□□□ -1
SYNE1-233ENST00000535896 RPRD2Q5VT52 1461 aaKnown RBP8.81□□□□□ -1
SYNE1-233ENST00000535896 NEO1Q92859 1461 aa8.81□□□□□ -1
SYNE1-233ENST00000535896 PREX2Q70Z35 1606 aa8.8□□□□□ -1
SYNE1-233ENST00000535896 IRX5P78411 483 aaPredicted RBP8.8□□□□□ -1
SYNE1-233ENST00000535896 TMEM121BQ9BXQ6 578 aaPredicted RBP8.79□□□□□ -1
SYNE1-233ENST00000535896 CDC42BPAQ5VT25 1732 aa8.79□□□□□ -1
SYNE1-233ENST00000535896 NCOA1Q15788 1441 aa8.79□□□□□ -1
SYNE1-233ENST00000535896 FANCAO15360 1455 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 ARHGAP5Q13017 1502 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 GPATCH8Q9UKJ3 1502 aaKnown RBP8.78□□□□□ -1
SYNE1-233ENST00000535896 SNPHO15079 494 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 ANP32EQ9BTT0 268 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 DAPK1P53355 1430 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 ADGRL2O95490 1459 aa8.78□□□□□ -1
SYNE1-233ENST00000535896 KDM6BO15054 1643 aa8.77□□□□□ -1
SYNE1-233ENST00000535896 CDC42BPBQ9Y5S2 1711 aa8.77□□□□□ -1.01
SYNE1-233ENST00000535896 EFCAB2Q5VUJ9 269 aa8.77□□□□□ -1.01
SYNE1-233ENST00000535896 OCEL1Q9H607 264 aa8.77□□□□□ -1.01
SYNE1-233ENST00000535896 DCAF8Q5TAQ9 597 aa8.75□□□□□ -1.01
SYNE1-233ENST00000535896 PLEKHH2Q8IVE3 1493 aa8.75□□□□□ -1.01
SYNE1-233ENST00000535896 MBD5Q9P267 1494 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms