RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 TSPY4P0CV99 314 aa25.68■■□□□ 1.7
SMPD1-210ENST00000534405 TSPY10P0CW01 314 aa25.68■■□□□ 1.7
SMPD1-210ENST00000534405 KDM5CP41229 1560 aa25.68■■□□□ 1.7
SMPD1-210ENST00000534405 KDM5DQ9BY66 1539 aa25.67■■□□□ 1.7
SMPD1-210ENST00000534405 DHX29Q7Z478 1369 aaKnown RBP25.67■■□□□ 1.7
SMPD1-210ENST00000534405 KIF15Q9NS87 1388 aa25.67■■□□□ 1.7
SMPD1-210ENST00000534405 UHRF1BP1Q6BDS2 1440 aa25.65■■□□□ 1.7
SMPD1-210ENST00000534405 ARHGEF5Q12774 1597 aa25.65■■□□□ 1.7
SMPD1-210ENST00000534405 SAMD9LQ8IVG5 1584 aa25.63■■□□□ 1.69
SMPD1-210ENST00000534405 CDC42BPBQ9Y5S2 1711 aa25.62■■□□□ 1.69
SMPD1-210ENST00000534405 POLR3GLQ9BT43 218 aa25.62■■□□□ 1.69
SMPD1-210ENST00000534405 PPM1GO15355 546 aaPredicted RBP25.62■■□□□ 1.69
SMPD1-210ENST00000534405 RALGAPBQ86X10 1494 aa25.61■■□□□ 1.69
SMPD1-210ENST00000534405 ZBED9Q6R2W3 1325 aa25.6■■□□□ 1.69
SMPD1-210ENST00000534405 CNGB1Q14028 1251 aaPredicted RBP25.59■■□□□ 1.69
SMPD1-210ENST00000534405 ARHGEF12Q9NZN5 1544 aa25.59■■□□□ 1.69
SMPD1-210ENST00000534405 PREX2Q70Z35 1606 aa25.59■■□□□ 1.69
SMPD1-210ENST00000534405 CCDC141Q6ZP82 1450 aa25.58■■□□□ 1.69
SMPD1-210ENST00000534405 GSE1Q14687 1217 aa25.56■■□□□ 1.68
SMPD1-210ENST00000534405 KDM2AQ9Y2K7 1162 aa25.56■■□□□ 1.68
SMPD1-210ENST00000534405 LAS1LQ9Y4W2 734 aaKnown RBP25.56■■□□□ 1.68
SMPD1-210ENST00000534405 CARD11Q9BXL7 1154 aa25.55■■□□□ 1.68
SMPD1-210ENST00000534405 CHD1O14646 1710 aa25.55■■□□□ 1.68
SMPD1-210ENST00000534405 GLIPR1L2Q4G1C9 344 aa25.55■■□□□ 1.68
SMPD1-210ENST00000534405 ARID4BQ4LE39 1312 aaPredicted RBP25.53■■□□□ 1.68
SMPD1-210ENST00000534405 FAM135AQ9P2D6 1515 aa25.53■■□□□ 1.68
SMPD1-210ENST00000534405 DCAF11Q8TEB1 546 aa25.52■■□□□ 1.68
SMPD1-210ENST00000534405 TTC37Q6PGP7 1564 aa25.51■■□□□ 1.67
SMPD1-210ENST00000534405 SYCP2Q9BX26 1530 aa25.5■■□□□ 1.67
SMPD1-210ENST00000534405 FAM43AQ8N2R8 423 aa25.49■■□□□ 1.67
SMPD1-210ENST00000534405 ST20-MTHFSA0A0A6YYL1 179 aa25.48■■□□□ 1.67
SMPD1-210ENST00000534405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.47■■□□□ 1.67
SMPD1-210ENST00000534405 ERCC6L2Q5T890 1561 aa25.47■■□□□ 1.67
SMPD1-210ENST00000534405 SHROOM2Q13796 1616 aa25.46■■□□□ 1.67
SMPD1-210ENST00000534405 RSPH4AQ5TD94 716 aa25.46■■□□□ 1.67
SMPD1-210ENST00000534405 RNF123Q5XPI4 1314 aa25.45■■□□□ 1.67
SMPD1-210ENST00000534405 ARHGAP5Q13017 1502 aa25.45■■□□□ 1.66
SMPD1-210ENST00000534405 ROCK2O75116 1388 aaKnown RBP25.44■■□□□ 1.66
SMPD1-210ENST00000534405 MAST1Q9Y2H9 1570 aa25.41■■□□□ 1.66
SMPD1-210ENST00000534405 ZMYND15Q9H091 742 aa25.41■■□□□ 1.66
SMPD1-210ENST00000534405 PLA2R1Q13018 1463 aa25.41■■□□□ 1.66
SMPD1-210ENST00000534405 SMG6Q86US8 1419 aaKnown RBP25.4■■□□□ 1.66
SMPD1-210ENST00000534405 UNC13BO14795 1591 aa25.39■■□□□ 1.66
SMPD1-210ENST00000534405 CCDC144AA2RUR9 1427 aa25.39■■□□□ 1.65
SMPD1-210ENST00000534405 PRAG1Q86YV5 1406 aa25.38■■□□□ 1.65
SMPD1-210ENST00000534405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.38■■□□□ 1.65
SMPD1-210ENST00000534405 ABCC2Q92887 1545 aa25.38■■□□□ 1.65
SMPD1-210ENST00000534405 PNISRQ8TF01 805 aaKnown RBP25.37■■□□□ 1.65
SMPD1-210ENST00000534405 SENP3-EIF4A1A0A087X0R7 540 aa25.37■■□□□ 1.65
SMPD1-210ENST00000534405 NPM2Q86SE8 214 aaKnown RBP25.37■■□□□ 1.65
SMPD1-210ENST00000534405 TRPM1Q7Z4N2 1603 aa25.37■■□□□ 1.65
SMPD1-210ENST00000534405 PLEKHH2Q8IVE3 1493 aa25.36■■□□□ 1.65
SMPD1-210ENST00000534405 RGL3Q3MIN7 710 aa25.36■■□□□ 1.65
SMPD1-210ENST00000534405 FRAT1Q92837 279 aaPredicted RBP25.36■■□□□ 1.65
SMPD1-210ENST00000534405 MYO5CQ9NQX4 1742 aa25.35■■□□□ 1.65
SMPD1-210ENST00000534405 E9PCH4 1651 aa25.35■■□□□ 1.65
SMPD1-210ENST00000534405 NBPF1Q3BBV0 1214 aa25.34■■□□□ 1.65
SMPD1-210ENST00000534405 PLXNC1O60486 1568 aa25.33■■□□□ 1.65
SMPD1-210ENST00000534405 TCERG1O14776 1098 aaKnown RBP25.33■■□□□ 1.64
SMPD1-210ENST00000534405 A2MP01023 1474 aa25.32■■□□□ 1.64
SMPD1-210ENST00000534405 TMC1Q8TDI8 760 aa25.32■■□□□ 1.64
SMPD1-210ENST00000534405 VSIG10Q8N0Z9 540 aa25.31■■□□□ 1.64
SMPD1-210ENST00000534405 PODXL2Q9NZ53 605 aa25.31■■□□□ 1.64
SMPD1-210ENST00000534405 IQGAP3Q86VI3 1631 aa25.3■■□□□ 1.64
SMPD1-210ENST00000534405 NFKBIBQ15653 356 aa25.29■■□□□ 1.64
SMPD1-210ENST00000534405 NUDCQ9Y266 331 aa25.29■■□□□ 1.64
SMPD1-210ENST00000534405 PDE4AP27815 886 aa25.28■■□□□ 1.64
SMPD1-210ENST00000534405 BACH2Q9BYV9 841 aa25.27■■□□□ 1.64
SMPD1-210ENST00000534405 MYBBP1AQ9BQG0 1328 aaKnown RBP25.26■■□□□ 1.63
SMPD1-210ENST00000534405 LRPPRCP42704 1394 aaKnown RBP25.26■■□□□ 1.63
SMPD1-210ENST00000534405 GPRASP1Q5JY77 1395 aa25.26■■□□□ 1.63
SMPD1-210ENST00000534405 DUOX2Q9NRD8 1548 aa25.25■■□□□ 1.63
SMPD1-210ENST00000534405 DDRGK1Q96HY6 314 aa25.24■■□□□ 1.63
SMPD1-210ENST00000534405 MAGI2Q86UL8 1455 aa25.24■■□□□ 1.63
SMPD1-210ENST00000534405 BRD4O60885 1362 aaPredicted RBP25.24■■□□□ 1.63
SMPD1-210ENST00000534405 PLCH2O75038 1416 aa25.24■■□□□ 1.63
SMPD1-210ENST00000534405 PLEKHG5O94827 1062 aa25.24■■□□□ 1.63
SMPD1-210ENST00000534405 RALBP1Q15311 655 aa25.24■■□□□ 1.63
SMPD1-210ENST00000534405 MS4A1P11836 297 aa25.23■■□□□ 1.63
SMPD1-210ENST00000534405 ZCCHC11Q5TAX3 1644 aaKnown RBP25.23■■□□□ 1.63
SMPD1-210ENST00000534405 KTN1Q86UP2 1357 aaKnown RBP25.22■■□□□ 1.63
SMPD1-210ENST00000534405 ERBINQ96RT1 1412 aa25.21■■□□□ 1.63
SMPD1-210ENST00000534405 PRDM15P57071 1507 aaPredicted RBP25.2■■□□□ 1.62
SMPD1-210ENST00000534405 ATP10AO60312 1499 aa25.2■■□□□ 1.62
SMPD1-210ENST00000534405 TRAPPC8Q9Y2L5 1435 aa25.19■■□□□ 1.62
SMPD1-210ENST00000534405 TESK2Q96S53 571 aa25.19■■□□□ 1.62
SMPD1-210ENST00000534405 DISP3Q9P2K9 1392 aa25.19■■□□□ 1.62
SMPD1-210ENST00000534405 PER1O15534 1290 aaPredicted RBP25.18■■□□□ 1.62
SMPD1-210ENST00000534405 LAMC1P11047 1609 aa25.18■■□□□ 1.62
SMPD1-210ENST00000534405 COL17A1Q9UMD9 1497 aaPredicted RBP25.18■■□□□ 1.62
SMPD1-210ENST00000534405 PARD3Q8TEW0 1356 aa25.18■■□□□ 1.62
SMPD1-210ENST00000534405 ABCC1P33527 1531 aa25.17■■□□□ 1.62
SMPD1-210ENST00000534405 EFCAB2Q5VUJ9 269 aa25.17■■□□□ 1.62
SMPD1-210ENST00000534405 CLASP1Q7Z460 1538 aa25.15■■□□□ 1.62
SMPD1-210ENST00000534405 SLC24A1O60721 1099 aa25.15■■□□□ 1.62
SMPD1-210ENST00000534405 UHRF1BP1LA0JNW5 1464 aa25.14■■□□□ 1.61
SMPD1-210ENST00000534405 DAXXQ9UER7 740 aaPredicted RBP25.14■■□□□ 1.61
SMPD1-210ENST00000534405 EIF2AK4Q9P2K8 1649 aaKnown RBP25.12■■□□□ 1.61
SMPD1-210ENST00000534405 NLRP13Q86W25 1043 aa25.12■■□□□ 1.61
SMPD1-210ENST00000534405 RRP9O43818 475 aaKnown RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms