RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 DOK7Q18PE1 504 aa9.88□□□□□ -0.83
CMTM1-220ENST00000534143 CHMP7Q8WUX9 453 aaPredicted RBP9.87□□□□□ -0.83
CMTM1-220ENST00000534143 TMC2Q8TDI7 906 aa9.86□□□□□ -0.83
CMTM1-220ENST00000534143 CTTNBP2Q8WZ74 1663 aa9.85□□□□□ -0.83
CMTM1-220ENST00000534143 ZNF710Q8N1W2 664 aa9.84□□□□□ -0.83
CMTM1-220ENST00000534143 NUP160Q12769 1436 aa9.83□□□□□ -0.84
CMTM1-220ENST00000534143 CEP170Q5SW79 1584 aa9.83□□□□□ -0.84
CMTM1-220ENST00000534143 RIMBP2O15034 1052 aa9.82□□□□□ -0.84
CMTM1-220ENST00000534143 KIAA0586Q9BVV6 1533 aa9.82□□□□□ -0.84
CMTM1-220ENST00000534143 ZSWIM6Q9HCJ5 1215 aa9.81□□□□□ -0.84
CMTM1-220ENST00000534143 GPHNQ9NQX3 736 aaPredicted RBP9.81□□□□□ -0.84
CMTM1-220ENST00000534143 CEP162Q5TB80 1403 aa9.81□□□□□ -0.84
CMTM1-220ENST00000534143 ARAP1Q96P48 1450 aa9.8□□□□□ -0.84
CMTM1-220ENST00000534143 HOXB1P14653 301 aaPredicted RBP9.8□□□□□ -0.84
CMTM1-220ENST00000534143 MARVELD3Q96A59 401 aa9.8□□□□□ -0.84
CMTM1-220ENST00000534143 CLASP1Q7Z460 1538 aa9.79□□□□□ -0.84
CMTM1-220ENST00000534143 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.79□□□□□ -0.84
CMTM1-220ENST00000534143 IQGAP2Q13576 1575 aa9.79□□□□□ -0.84
CMTM1-220ENST00000534143 FOXK1P85037 733 aa9.78□□□□□ -0.84
CMTM1-220ENST00000534143 CLIP1P30622 1438 aa9.78□□□□□ -0.84
CMTM1-220ENST00000534143 EMP3P54852 163 aa9.77□□□□□ -0.85
CMTM1-220ENST00000534143 GPR153Q6NV75 609 aa9.77□□□□□ -0.85
CMTM1-220ENST00000534143 SPRYD3Q8NCJ5 442 aa9.77□□□□□ -0.85
CMTM1-220ENST00000534143 CRISPLD2Q9H0B8 497 aa9.77□□□□□ -0.85
CMTM1-220ENST00000534143 UGGT2Q9NYU1 1516 aa9.77□□□□□ -0.85
CMTM1-220ENST00000534143 SLC34A2O95436 690 aa9.76□□□□□ -0.85
CMTM1-220ENST00000534143 CYB5RLQ6IPT4 315 aa9.76□□□□□ -0.85
CMTM1-220ENST00000534143 ARHGAP35Q9NRY4 1499 aa9.76□□□□□ -0.85
CMTM1-220ENST00000534143 PDE4AP27815 886 aa9.75□□□□□ -0.85
CMTM1-220ENST00000534143 DSG2Q14126 1118 aa9.75□□□□□ -0.85
CMTM1-220ENST00000534143 JPH4Q96JJ6 628 aa9.75□□□□□ -0.85
CMTM1-220ENST00000534143 SAMD9Q5K651 1589 aa9.75□□□□□ -0.85
CMTM1-220ENST00000534143 RANGAP1P46060 587 aaPredicted RBP9.74□□□□□ -0.85
CMTM1-220ENST00000534143 CDAN1Q8IWY9 1227 aa9.74□□□□□ -0.85
CMTM1-220ENST00000534143 PLPP6Q8IY26 295 aa9.74□□□□□ -0.85
CMTM1-220ENST00000534143 NCKAP5LQ9HCH0 1330 aa9.74□□□□□ -0.85
CMTM1-220ENST00000534143 EFCAB5A4FU69 1503 aa9.73□□□□□ -0.85
CMTM1-220ENST00000534143 ARSIQ5FYB1 569 aa9.73□□□□□ -0.85
CMTM1-220ENST00000534143 SHROOM2Q13796 1616 aa9.73□□□□□ -0.85
CMTM1-220ENST00000534143 FAM205CA6NFA0 338 aa9.72□□□□□ -0.85
CMTM1-220ENST00000534143 DISP1Q96F81 1524 aa9.72□□□□□ -0.85
CMTM1-220ENST00000534143 PAXIP1Q6ZW49 1069 aaPredicted RBP9.71□□□□□ -0.86
CMTM1-220ENST00000534143 HS3ST6Q96QI5 342 aa9.71□□□□□ -0.86
CMTM1-220ENST00000534143 POTEB3A0JP26 581 aa9.7□□□□□ -0.86
CMTM1-220ENST00000534143 POTEBQ6S5H4 581 aa9.7□□□□□ -0.86
CMTM1-220ENST00000534143 CADPS2Q86UW7 1296 aa9.7□□□□□ -0.86
CMTM1-220ENST00000534143 P3H3Q8IVL6 736 aa9.7□□□□□ -0.86
CMTM1-220ENST00000534143 KHSRPQ92945 711 aaKnown RBP eCLIP9.7□□□□□ -0.86
CMTM1-220ENST00000534143 CFAP44Q96MT7 982 aa9.7□□□□□ -0.86
CMTM1-220ENST00000534143 KIAA0556O60303 1618 aa9.69□□□□□ -0.86
CMTM1-220ENST00000534143 PPP1R15BQ5SWA1 713 aa9.69□□□□□ -0.86
CMTM1-220ENST00000534143 PTCD2Q8WV60 388 aaKnown RBP9.69□□□□□ -0.86
CMTM1-220ENST00000534143 PCDHGA4Q9Y5G9 962 aa9.69□□□□□ -0.86
CMTM1-220ENST00000534143 FHOD3Q2V2M9 1422 aa9.68□□□□□ -0.86
CMTM1-220ENST00000534143 PRG4Q92954 1404 aaPredicted RBP9.68□□□□□ -0.86
CMTM1-220ENST00000534143 ERBB3P21860 1342 aa9.68□□□□□ -0.86
CMTM1-220ENST00000534143 LARP6Q9BRS8 491 aaKnown RBP9.68□□□□□ -0.86
CMTM1-220ENST00000534143 CARMIL2Q6F5E8 1435 aa9.67□□□□□ -0.86
CMTM1-220ENST00000534143 VPS8Q8N3P4 1428 aa9.67□□□□□ -0.86
CMTM1-220ENST00000534143 MFSD10Q14728 455 aa9.67□□□□□ -0.86
CMTM1-220ENST00000534143 ERCC6L2Q5T890 1561 aa9.67□□□□□ -0.86
CMTM1-220ENST00000534143 DDX27Q96GQ7 796 aaKnown RBP9.66□□□□□ -0.86
CMTM1-220ENST00000534143 NUDT7P0C024 238 aa9.65□□□□□ -0.86
CMTM1-220ENST00000534143 FMN1Q68DA7 1419 aa9.64□□□□□ -0.87
CMTM1-220ENST00000534143 ZNF316A6NFI3 1004 aaPredicted RBP9.63□□□□□ -0.87
CMTM1-220ENST00000534143 TBC1D12O60347 775 aa9.63□□□□□ -0.87
CMTM1-220ENST00000534143 VARS2Q5ST30 1063 aaKnown RBP9.63□□□□□ -0.87
CMTM1-220ENST00000534143 OXER1Q8TDS5 423 aa9.62□□□□□ -0.87
CMTM1-220ENST00000534143 CASKIN1Q8WXD9 1431 aa9.62□□□□□ -0.87
CMTM1-220ENST00000534143 KDM4FA0A1W2PPD8 638 aa9.61□□□□□ -0.87
CMTM1-220ENST00000534143 PCF11O94913 1555 aaKnown RBP9.6□□□□□ -0.87
CMTM1-220ENST00000534143 PTPRGP23470 1445 aa9.6□□□□□ -0.87
CMTM1-220ENST00000534143 ABCA8O94911 1581 aa9.59□□□□□ -0.87
CMTM1-220ENST00000534143 ZNF687Q8N1G0 1237 aa9.59□□□□□ -0.87
CMTM1-220ENST00000534143 LHX6Q9UPM6 363 aa9.59□□□□□ -0.87
CMTM1-220ENST00000534143 FYCO1Q9BQS8 1478 aa9.59□□□□□ -0.87
CMTM1-220ENST00000534143 RAPGEF6Q8TEU7 1601 aa9.58□□□□□ -0.88
CMTM1-220ENST00000534143 UPF1Q92900 1129 aaKnown RBP eCLIP9.58□□□□□ -0.88
CMTM1-220ENST00000534143 LRRIQ1Q96JM4 1722 aa9.58□□□□□ -0.88
CMTM1-220ENST00000534143 TTBK1Q5TCY1 1321 aaPredicted RBP9.57□□□□□ -0.88
CMTM1-220ENST00000534143 MAP3K1Q13233 1512 aa9.57□□□□□ -0.88
CMTM1-220ENST00000534143 KRTAP3-3Q9BYR6 98 aa9.57□□□□□ -0.88
CMTM1-220ENST00000534143 KRTAP3-2Q9BYR7 98 aa9.57□□□□□ -0.88
CMTM1-220ENST00000534143 PLB1Q6P1J6 1458 aa9.57□□□□□ -0.88
CMTM1-220ENST00000534143 HECW1Q76N89 1606 aa9.56□□□□□ -0.88
CMTM1-220ENST00000534143 NUP153P49790 1475 aaKnown RBP9.55□□□□□ -0.88
CMTM1-220ENST00000534143 KIF13AQ9H1H9 1805 aa9.55□□□□□ -0.88
CMTM1-220ENST00000534143 UACAQ9BZF9 1416 aa9.55□□□□□ -0.88
CMTM1-220ENST00000534143 TIAM1Q13009 1591 aa9.54□□□□□ -0.88
CMTM1-220ENST00000534143 UHRF1BP1LA0JNW5 1464 aa9.54□□□□□ -0.88
CMTM1-220ENST00000534143 PSDA5PKW4 1024 aaPredicted RBP9.54□□□□□ -0.88
CMTM1-220ENST00000534143 CAMK2BQ13554 666 aa9.54□□□□□ -0.88
CMTM1-220ENST00000534143 EMILIN3Q9NT22 766 aa9.54□□□□□ -0.88
CMTM1-220ENST00000534143 ATP1B4Q9UN42 357 aaPredicted RBP9.54□□□□□ -0.88
CMTM1-220ENST00000534143 EPRSP07814 1512 aaKnown RBP9.54□□□□□ -0.88
CMTM1-220ENST00000534143 CFAP43Q8NDM7 1665 aa9.54□□□□□ -0.88
CMTM1-220ENST00000534143 CCDC18Q5T9S5 1454 aa9.53□□□□□ -0.88
CMTM1-220ENST00000534143 ABCC2Q92887 1545 aa9.52□□□□□ -0.88
CMTM1-220ENST00000534143 MAP3K9P80192 1104 aa9.52□□□□□ -0.89
CMTM1-220ENST00000534143 KANK4Q5T7N3 995 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms