RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-223ENST00000529986 RAB3GAP2Q9H2M9 1393 aa9.49□□□□□ -0.89
CTNND1-223ENST00000529986 PHF14O94880 888 aa9.49□□□□□ -0.89
CTNND1-223ENST00000529986 BCL2L13Q9BXK5 485 aa9.48□□□□□ -0.89
CTNND1-223ENST00000529986 CENPJQ9HC77 1338 aaPredicted RBP9.48□□□□□ -0.89
CTNND1-223ENST00000529986 PATL2C9JE40 543 aaKnown RBP9.48□□□□□ -0.89
CTNND1-223ENST00000529986 FAM43AQ8N2R8 423 aa9.48□□□□□ -0.89
CTNND1-223ENST00000529986 PKD2Q13563 968 aa9.48□□□□□ -0.89
CTNND1-223ENST00000529986 RTF1Q92541 710 aaKnown RBP9.48□□□□□ -0.89
CTNND1-223ENST00000529986 ST18O60284 1047 aa9.47□□□□□ -0.89
CTNND1-223ENST00000529986 TDRD9Q8NDG6 1382 aaKnown RBP9.47□□□□□ -0.89
CTNND1-223ENST00000529986 NFKBIBQ15653 356 aa9.47□□□□□ -0.89
CTNND1-223ENST00000529986 CENPQQ7L2Z9 268 aaPredicted RBP9.47□□□□□ -0.89
CTNND1-223ENST00000529986 RUSC2Q8N2Y8 1516 aa9.47□□□□□ -0.89
CTNND1-223ENST00000529986 PRKCSHP14314 528 aaPredicted RBP9.47□□□□□ -0.89
CTNND1-223ENST00000529986 RRP7AQ9Y3A4 280 aaKnown RBP9.47□□□□□ -0.89
CTNND1-223ENST00000529986 RRP1P56182 461 aaKnown RBP9.46□□□□□ -0.89
CTNND1-223ENST00000529986 SLC4A10Q6U841 1118 aa9.46□□□□□ -0.89
CTNND1-223ENST00000529986 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.46□□□□□ -0.89
CTNND1-223ENST00000529986 CSPP1Q1MSJ5 1256 aa9.46□□□□□ -0.89
CTNND1-223ENST00000529986 STK26Q9P289 416 aa9.46□□□□□ -0.89
CTNND1-223ENST00000529986 SETQ01105 290 aaPredicted RBP9.46□□□□□ -0.9
CTNND1-223ENST00000529986 R3HCC1Q9Y3T6 440 aaKnown RBP9.45□□□□□ -0.9
CTNND1-223ENST00000529986 FHOD3Q2V2M9 1422 aa9.45□□□□□ -0.9
CTNND1-223ENST00000529986 FANCD2Q9BXW9 1451 aa9.45□□□□□ -0.9
CTNND1-223ENST00000529986 ROCK2O75116 1388 aaKnown RBP9.45□□□□□ -0.9
CTNND1-223ENST00000529986 SKOR2Q2VWA4 1001 aaPredicted RBP9.45□□□□□ -0.9
CTNND1-223ENST00000529986 KANK1Q14678 1352 aa9.45□□□□□ -0.9
CTNND1-223ENST00000529986 CHMP3Q9Y3E7 222 aa9.45□□□□□ -0.9
CTNND1-223ENST00000529986 TPM3P06753 285 aa9.44□□□□□ -0.9
CTNND1-223ENST00000529986 L3MBTL2Q969R5 705 aa9.44□□□□□ -0.9
CTNND1-223ENST00000529986 MPHOSPH9Q99550 1183 aa9.44□□□□□ -0.9
CTNND1-223ENST00000529986 COG6Q9Y2V7 657 aa9.44□□□□□ -0.9
CTNND1-223ENST00000529986 PDE3BQ13370 1112 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 ANKRD45Q5TZF3 282 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 NLRP13Q86W25 1043 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 KIF16BQ96L93 1317 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.43□□□□□ -0.9
CTNND1-223ENST00000529986 CCDC18Q5T9S5 1454 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 GOLGA6L19H0YKK7 550 aa9.43□□□□□ -0.9
CTNND1-223ENST00000529986 PES1O00541 588 aaKnown RBP9.43□□□□□ -0.9
CTNND1-223ENST00000529986 SF3A1Q15459 793 aaKnown RBP9.43□□□□□ -0.9
CTNND1-223ENST00000529986 RBM10P98175 930 aaKnown RBP9.43□□□□□ -0.9
CTNND1-223ENST00000529986 BECN2A8MW95 431 aa9.42□□□□□ -0.9
CTNND1-223ENST00000529986 RILPL2Q969X0 211 aa9.42□□□□□ -0.9
CTNND1-223ENST00000529986 ZNF330Q9Y3S2 320 aaPredicted RBP9.42□□□□□ -0.9
CTNND1-223ENST00000529986 RASSF8Q8NHQ8 419 aa9.42□□□□□ -0.9
CTNND1-223ENST00000529986 KIF21BO75037 1637 aa9.41□□□□□ -0.9
CTNND1-223ENST00000529986 ANKRD30AQ9BXX3 1397 aa9.41□□□□□ -0.9
CTNND1-223ENST00000529986 ELL2O00472 640 aaPredicted RBP9.41□□□□□ -0.9
CTNND1-223ENST00000529986 CHMP5Q9NZZ3 219 aa9.41□□□□□ -0.9
CTNND1-223ENST00000529986 HMMRO75330 724 aa9.4□□□□□ -0.9
CTNND1-223ENST00000529986 HDGFP51858 240 aaKnown RBP9.4□□□□□ -0.9
CTNND1-223ENST00000529986 PAK3O75914 559 aaPredicted RBP9.4□□□□□ -0.9
CTNND1-223ENST00000529986 H3BQV1 296 aa9.4□□□□□ -0.9
CTNND1-223ENST00000529986 IFFO2Q5TF58 517 aa9.4□□□□□ -0.9
CTNND1-223ENST00000529986 ZBED9Q6R2W3 1325 aa9.4□□□□□ -0.91
CTNND1-223ENST00000529986 MCTP1Q6DN14 999 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 STK31Q9BXU1 1019 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 PRKRIP1Q9H875 184 aaPredicted RBP9.39□□□□□ -0.91
CTNND1-223ENST00000529986 FBXW7Q969H0 707 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 GORABQ5T7V8 394 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 CCDC9Q9Y3X0 531 aaKnown RBP9.39□□□□□ -0.91
CTNND1-223ENST00000529986 GPS2Q13227 327 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 HOMER1Q86YM7 354 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 NCAPD3P42695 1498 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 FGD5Q6ZNL6 1462 aa9.39□□□□□ -0.91
CTNND1-223ENST00000529986 TEX35Q5T0J7 233 aa9.38□□□□□ -0.91
CTNND1-223ENST00000529986 HDGFL2Q7Z4V5 671 aaPredicted RBP9.38□□□□□ -0.91
CTNND1-223ENST00000529986 RNF214Q8ND24 703 aa9.38□□□□□ -0.91
CTNND1-223ENST00000529986 GPATCH3Q96I76 525 aa9.38□□□□□ -0.91
CTNND1-223ENST00000529986 FRAT2O75474 233 aaPredicted RBP9.38□□□□□ -0.91
CTNND1-223ENST00000529986 PODXL2Q9NZ53 605 aa9.38□□□□□ -0.91
CTNND1-223ENST00000529986 CCDC34Q96HJ3 373 aa9.38□□□□□ -0.91
CTNND1-223ENST00000529986 IFT57Q9NWB7 429 aa9.37□□□□□ -0.91
CTNND1-223ENST00000529986 TPD52L1Q16890 204 aaPredicted RBP9.37□□□□□ -0.91
CTNND1-223ENST00000529986 MYBBP1AQ9BQG0 1328 aaKnown RBP9.37□□□□□ -0.91
CTNND1-223ENST00000529986 DHX57Q6P158 1386 aaKnown RBP9.37□□□□□ -0.91
CTNND1-223ENST00000529986 TOMM22Q9NS69 142 aa9.37□□□□□ -0.91
CTNND1-223ENST00000529986 ERICH3Q5RHP9 1530 aa9.37□□□□□ -0.91
CTNND1-223ENST00000529986 FAM184AQ8NB25 1140 aa9.36□□□□□ -0.91
CTNND1-223ENST00000529986 NASPP49321 788 aaPredicted RBP9.36□□□□□ -0.91
CTNND1-223ENST00000529986 MRE11P49959 708 aa9.36□□□□□ -0.91
CTNND1-223ENST00000529986 PANK3Q9H999 370 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 ATP6V1DQ9Y5K8 247 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 ST20-MTHFSA0A0A6YYL1 179 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 MAPK8IP2Q13387 824 aaPredicted RBP9.35□□□□□ -0.91
CTNND1-223ENST00000529986 NUP155O75694 1391 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 KIF15Q9NS87 1388 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 CUX1P39880 1505 aa9.35□□□□□ -0.91
CTNND1-223ENST00000529986 ZKSCAN2Q63HK3 967 aa9.34□□□□□ -0.91
CTNND1-223ENST00000529986 AEBP2Q6ZN18 517 aaPredicted RBP9.34□□□□□ -0.91
CTNND1-223ENST00000529986 TRAK2O60296 914 aa9.34□□□□□ -0.91
CTNND1-223ENST00000529986 CALRP27797 417 aaKnown RBP9.34□□□□□ -0.91
CTNND1-223ENST00000529986 MLECQ14165 292 aa9.34□□□□□ -0.91
CTNND1-223ENST00000529986 TSR1Q2NL82 804 aaKnown RBP9.34□□□□□ -0.91
CTNND1-223ENST00000529986 BICD2Q8TD16 824 aa9.34□□□□□ -0.91
CTNND1-223ENST00000529986 PRM3Q9NNZ6 103 aa9.34□□□□□ -0.91
CTNND1-223ENST00000529986 APAF1O14727 1248 aa9.33□□□□□ -0.92
CTNND1-223ENST00000529986 IGF1RP08069 1367 aa9.33□□□□□ -0.92
CTNND1-223ENST00000529986 SYNJ1O43426 1573 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms