RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ST20-MTHFSA0A0A6YYL1 179 aa18.99■□□□□ 0.63
USP48-213ENST00000529637 ADGRL2O95490 1459 aa18.98■□□□□ 0.63
USP48-213ENST00000529637 ADGBQ8N7X0 1667 aa18.97■□□□□ 0.63
USP48-213ENST00000529637 EXOC6Q8TAG9 804 aa18.93■□□□□ 0.62
USP48-213ENST00000529637 DHX29Q7Z478 1369 aaKnown RBP18.93■□□□□ 0.62
USP48-213ENST00000529637 ROCK2O75116 1388 aaKnown RBP18.92■□□□□ 0.62
USP48-213ENST00000529637 PDE4AP27815 886 aa18.92■□□□□ 0.62
USP48-213ENST00000529637 ADCY10Q96PN6 1610 aa18.91■□□□□ 0.62
USP48-213ENST00000529637 ABCC10Q5T3U5 1492 aa18.91■□□□□ 0.62
USP48-213ENST00000529637 SKAP1Q86WV1 359 aa18.91■□□□□ 0.62
USP48-213ENST00000529637 CDC42BPAQ5VT25 1732 aa18.9■□□□□ 0.62
USP48-213ENST00000529637 ABCA8O94911 1581 aa18.9■□□□□ 0.62
USP48-213ENST00000529637 MBD5Q9P267 1494 aa18.9■□□□□ 0.62
USP48-213ENST00000529637 BRPF3Q9ULD4 1205 aa18.9■□□□□ 0.62
USP48-213ENST00000529637 PNISRQ8TF01 805 aaKnown RBP18.89■□□□□ 0.62
USP48-213ENST00000529637 CROCC2H7BZ55 1655 aa18.89■□□□□ 0.61
USP48-213ENST00000529637 BCORL1Q5H9F3 1711 aa18.88■□□□□ 0.61
USP48-213ENST00000529637 BACH2Q9BYV9 841 aa18.86■□□□□ 0.61
USP48-213ENST00000529637 WASHC2CQ9Y4E1 1318 aa18.86■□□□□ 0.61
USP48-213ENST00000529637 ARID4BQ4LE39 1312 aaPredicted RBP18.85■□□□□ 0.61
USP48-213ENST00000529637 SHANK2Q9UPX8 1470 aa18.85■□□□□ 0.61
USP48-213ENST00000529637 CCDC144AA2RUR9 1427 aa18.85■□□□□ 0.61
USP48-213ENST00000529637 RRP1P56182 461 aaKnown RBP18.85■□□□□ 0.61
USP48-213ENST00000529637 RALGAPBQ86X10 1494 aa18.84■□□□□ 0.61
USP48-213ENST00000529637 NBPF1Q3BBV0 1214 aa18.84■□□□□ 0.61
USP48-213ENST00000529637 TCERG1O14776 1098 aaKnown RBP18.84■□□□□ 0.61
USP48-213ENST00000529637 CCDC141Q6ZP82 1450 aa18.84■□□□□ 0.61
USP48-213ENST00000529637 USP35Q9P2H5 1018 aa18.83■□□□□ 0.61
USP48-213ENST00000529637 RSPH4AQ5TD94 716 aa18.83■□□□□ 0.61
USP48-213ENST00000529637 KDM5CP41229 1560 aa18.82■□□□□ 0.6
USP48-213ENST00000529637 ARHGAP5Q13017 1502 aa18.81■□□□□ 0.6
USP48-213ENST00000529637 UHRF1BP1Q6BDS2 1440 aa18.81■□□□□ 0.6
USP48-213ENST00000529637 SLC4A3P48751 1232 aa18.8■□□□□ 0.6
USP48-213ENST00000529637 POLR1AO95602 1720 aaPredicted RBP18.8■□□□□ 0.6
USP48-213ENST00000529637 CC2D1BQ5T0F9 858 aaKnown RBP18.79■□□□□ 0.6
USP48-213ENST00000529637 MYBBP1AQ9BQG0 1328 aaKnown RBP18.78■□□□□ 0.6
USP48-213ENST00000529637 FAM135AQ9P2D6 1515 aa18.77■□□□□ 0.6
USP48-213ENST00000529637 PPM1GO15355 546 aaPredicted RBP18.77■□□□□ 0.6
USP48-213ENST00000529637 RALBP1Q15311 655 aa18.77■□□□□ 0.6
USP48-213ENST00000529637 RCAN3Q9UKA8 241 aa18.77■□□□□ 0.6
USP48-213ENST00000529637 SYCP2Q9BX26 1530 aa18.77■□□□□ 0.59
USP48-213ENST00000529637 ARHGEF12Q9NZN5 1544 aa18.76■□□□□ 0.59
USP48-213ENST00000529637 SAMD9LQ8IVG5 1584 aa18.76■□□□□ 0.59
USP48-213ENST00000529637 PLIN1O60240 522 aa18.76■□□□□ 0.59
USP48-213ENST00000529637 GSE1Q14687 1217 aa18.75■□□□□ 0.59
USP48-213ENST00000529637 KTN1Q86UP2 1357 aaKnown RBP18.74■□□□□ 0.59
USP48-213ENST00000529637 NFKBIBQ15653 356 aa18.73■□□□□ 0.59
USP48-213ENST00000529637 ARHGEF5Q12774 1597 aa18.73■□□□□ 0.59
USP48-213ENST00000529637 PLEKHH2Q8IVE3 1493 aa18.73■□□□□ 0.59
USP48-213ENST00000529637 EIF5BO60841 1220 aaKnown RBP18.72■□□□□ 0.59
USP48-213ENST00000529637 CDCA7LQ96GN5 454 aa18.72■□□□□ 0.59
USP48-213ENST00000529637 FRAT1Q92837 279 aaPredicted RBP18.72■□□□□ 0.59
USP48-213ENST00000529637 NLRP13Q86W25 1043 aa18.72■□□□□ 0.59
USP48-213ENST00000529637 MS4A1P11836 297 aa18.71■□□□□ 0.59
USP48-213ENST00000529637 KDM5DQ9BY66 1539 aa18.71■□□□□ 0.59
USP48-213ENST00000529637 EFCAB2Q5VUJ9 269 aa18.71■□□□□ 0.59
USP48-213ENST00000529637 LRPPRCP42704 1394 aaKnown RBP18.71■□□□□ 0.59
USP48-213ENST00000529637 BRD4O60885 1362 aaPredicted RBP18.7■□□□□ 0.58
USP48-213ENST00000529637 CDC42BPBQ9Y5S2 1711 aa18.7■□□□□ 0.58
USP48-213ENST00000529637 PRAG1Q86YV5 1406 aa18.7■□□□□ 0.58
USP48-213ENST00000529637 UBE2Q2Q8WVN8 375 aa18.69■□□□□ 0.58
USP48-213ENST00000529637 PANK3Q9H999 370 aa18.69■□□□□ 0.58
USP48-213ENST00000529637 PREX2Q70Z35 1606 aa18.68■□□□□ 0.58
USP48-213ENST00000529637 TTC37Q6PGP7 1564 aa18.67■□□□□ 0.58
USP48-213ENST00000529637 TMF1P82094 1093 aa18.67■□□□□ 0.58
USP48-213ENST00000529637 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.65■□□□□ 0.588e-20■■□□□ 11.4
USP48-213ENST00000529637 AFAP1Q8N556 730 aa18.65■□□□□ 0.58
USP48-213ENST00000529637 PLA2R1Q13018 1463 aa18.65■□□□□ 0.58
USP48-213ENST00000529637 DISP3Q9P2K9 1392 aa18.65■□□□□ 0.58
USP48-213ENST00000529637 CRBNQ96SW2 442 aa18.64■□□□□ 0.58
USP48-213ENST00000529637 A2MP01023 1474 aa18.64■□□□□ 0.57
USP48-213ENST00000529637 CHD1O14646 1710 aa18.64■□□□□ 0.57
USP48-213ENST00000529637 ERCC6L2Q5T890 1561 aa18.64■□□□□ 0.57
USP48-213ENST00000529637 SPAG9O60271 1321 aaKnown RBP18.63■□□□□ 0.57
USP48-213ENST00000529637 DDRGK1Q96HY6 314 aa18.61■□□□□ 0.57
USP48-213ENST00000529637 TESK2Q96S53 571 aa18.61■□□□□ 0.57
USP48-213ENST00000529637 C20orf194Q5TEA3 1177 aa18.61■□□□□ 0.57
USP48-213ENST00000529637 PER1O15534 1290 aaPredicted RBP18.6■□□□□ 0.57
USP48-213ENST00000529637 FRAT2O75474 233 aaPredicted RBP18.59■□□□□ 0.57
USP48-213ENST00000529637 ERBINQ96RT1 1412 aa18.59■□□□□ 0.57
USP48-213ENST00000529637 KNSTRNQ9Y448 316 aa18.59■□□□□ 0.57
USP48-213ENST00000529637 ABCC2Q92887 1545 aa18.58■□□□□ 0.56
USP48-213ENST00000529637 PARD3Q8TEW0 1356 aa18.58■□□□□ 0.56
USP48-213ENST00000529637 TRAPPC8Q9Y2L5 1435 aa18.57■□□□□ 0.56
USP48-213ENST00000529637 TRPM1Q7Z4N2 1603 aa18.56■□□□□ 0.56
USP48-213ENST00000529637 DUOX2Q9NRD8 1548 aa18.55■□□□□ 0.56
USP48-213ENST00000529637 PLCH2O75038 1416 aa18.55■□□□□ 0.56
USP48-213ENST00000529637 MYO5CQ9NQX4 1742 aa18.55■□□□□ 0.56
USP48-213ENST00000529637 GPRASP1Q5JY77 1395 aa18.54■□□□□ 0.56
USP48-213ENST00000529637 KIF3BO15066 747 aa18.54■□□□□ 0.56
USP48-213ENST00000529637 DAXXQ9UER7 740 aaPredicted RBP18.54■□□□□ 0.56
USP48-213ENST00000529637 WDR43Q15061 677 aaKnown RBP eCLIP18.54■□□□□ 0.56
USP48-213ENST00000529637 COL17A1Q9UMD9 1497 aaPredicted RBP18.53■□□□□ 0.56
USP48-213ENST00000529637 PDE3BQ13370 1112 aa18.53■□□□□ 0.56
USP48-213ENST00000529637 UNC13BO14795 1591 aa18.52■□□□□ 0.56
USP48-213ENST00000529637 C8orf34Q49A92 452 aa18.51■□□□□ 0.55
USP48-213ENST00000529637 CHGAP10645 457 aaKnown RBP18.5■□□□□ 0.55
USP48-213ENST00000529637 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
USP48-213ENST00000529637 MAST1Q9Y2H9 1570 aa18.5■□□□□ 0.55
USP48-213ENST00000529637 KDM2BQ8NHM5 1336 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms