RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	MAP3K7	O43318	606 aa		11.58	□□□□□ -0.56
CD44-223	ENST00000526553	RBM33	Q96EV2	1170 aa	Known RBP	11.58	□□□□□ -0.56
CD44-223	ENST00000526553	KCNH8	Q96L42	1107 aa		11.58	□□□□□ -0.56
CD44-223	ENST00000526553	C6orf132	Q5T0Z8	1188 aa		11.56	□□□□□ -0.56
CD44-223	ENST00000526553	KCNK17	Q96T54	332 aa		11.56	□□□□□ -0.56
CD44-223	ENST00000526553	KRTAP3-3	Q9BYR6	98 aa		11.55	□□□□□ -0.56
CD44-223	ENST00000526553	KRTAP3-2	Q9BYR7	98 aa		11.55	□□□□□ -0.56
CD44-223	ENST00000526553	PPP1R3G	B7ZBB8	358 aa		11.54	□□□□□ -0.56
CD44-223	ENST00000526553	TSR1	Q2NL82	804 aa	Known RBP	11.54	□□□□□ -0.56
CD44-223	ENST00000526553	AXIN2	Q9Y2T1	843 aa		11.54	□□□□□ -0.56
CD44-223	ENST00000526553	PSEN2	P49810	448 aa		11.53	□□□□□ -0.56
CD44-223	ENST00000526553	LSM11	P83369	360 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
CD44-223	ENST00000526553	RBM26	Q5T8P6	1007 aa	Known RBP	11.51	□□□□□ -0.57
CD44-223	ENST00000526553	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
CD44-223	ENST00000526553	CERK	Q8TCT0	537 aa		11.5	□□□□□ -0.57
CD44-223	ENST00000526553	CDHR5	Q9HBB8	845 aa		11.5	□□□□□ -0.57
CD44-223	ENST00000526553	COL9A1	P20849	921 aa		11.49	□□□□□ -0.57
CD44-223	ENST00000526553	DMRTA1	Q5VZB9	504 aa		11.49	□□□□□ -0.57
CD44-223	ENST00000526553	SLC4A5	Q9BY07	1137 aa		11.49	□□□□□ -0.57
CD44-223	ENST00000526553	NUTM2F	A1L443	756 aa		11.47	□□□□□ -0.57
CD44-223	ENST00000526553	TK2	O00142	265 aa		11.47	□□□□□ -0.57
CD44-223	ENST00000526553	ZBED2	Q9BTP6	218 aa		11.47	□□□□□ -0.57
CD44-223	ENST00000526553	LMOD2	Q6P5Q4	547 aa		11.46	□□□□□ -0.57
CD44-223	ENST00000526553	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.46	□□□□□ -0.57
CD44-223	ENST00000526553	PTGDR	Q13258	359 aa		11.45	□□□□□ -0.58
CD44-223	ENST00000526553	GPIHBP1	Q8IV16	184 aa		11.45	□□□□□ -0.58
CD44-223	ENST00000526553	FCHSD2	O94868	740 aa		11.44	□□□□□ -0.58
CD44-223	ENST00000526553	RBM27	Q9P2N5	1060 aa	Known RBP	11.44	□□□□□ -0.58
CD44-223	ENST00000526553	ONECUT3	O60422	494 aa	Predicted RBP	11.43	□□□□□ -0.58
CD44-223	ENST00000526553	GPR37	O15354	613 aa		11.42	□□□□□ -0.58
CD44-223	ENST00000526553	ADGRD1	Q6QNK2	874 aa		11.42	□□□□□ -0.58
CD44-223	ENST00000526553	ANKRD13D	Q6ZTN6	518 aa		11.42	□□□□□ -0.58
CD44-223	ENST00000526553	VPS9D1	Q9Y2B5	631 aa		11.42	□□□□□ -0.58
CD44-223	ENST00000526553	PRSS12	P56730	875 aa		11.41	□□□□□ -0.58
CD44-223	ENST00000526553	TRIM6-TRIM34	B2RNG4	842 aa		11.4	□□□□□ -0.58
CD44-223	ENST00000526553	PROX2	Q3B8N5	592 aa		11.4	□□□□□ -0.58
CD44-223	ENST00000526553	CDCA7L	Q96GN5	454 aa		11.4	□□□□□ -0.58
CD44-223	ENST00000526553	HIC1	Q14526	733 aa		11.39	□□□□□ -0.59
CD44-223	ENST00000526553	TTC13	Q8NBP0	860 aa		11.38	□□□□□ -0.59
CD44-223	ENST00000526553	HR	O43593	1189 aa		11.37	□□□□□ -0.59
CD44-223	ENST00000526553	RABGEF1	Q9UJ41	708 aa		11.37	□□□□□ -0.59
CD44-223	ENST00000526553	TSKS	Q9UJT2	592 aa		11.37	□□□□□ -0.59
CD44-223	ENST00000526553	PADI6	Q6TGC4	694 aa		11.36	□□□□□ -0.59
CD44-223	ENST00000526553	GNPAT	O15228	680 aa		11.35	□□□□□ -0.59
CD44-223	ENST00000526553	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.34	□□□□□ -0.59
CD44-223	ENST00000526553	PACS2	Q86VP3	889 aa		11.34	□□□□□ -0.59
CD44-223	ENST00000526553	KIAA1468	Q9P260	1216 aa		11.34	□□□□□ -0.59
CD44-223	ENST00000526553	FAM198A	Q9UFP1	575 aa		11.34	□□□□□ -0.59
CD44-223	ENST00000526553	NBPF3	Q9H094	633 aa		11.33	□□□□□ -0.6
CD44-223	ENST00000526553	ZC3H15	Q8WU90	426 aa	Known RBP	11.32	□□□□□ -0.6
CD44-223	ENST00000526553	NBPF26	B4DH59	902 aa		11.31	□□□□□ -0.6
CD44-223	ENST00000526553	SPNS2	Q8IVW8	549 aa		11.31	□□□□□ -0.6
CD44-223	ENST00000526553	LAPTM4B	Q86VI4	370 aa		11.29	□□□□□ -0.6
CD44-223	ENST00000526553	FECH	P22830	423 aa		11.28	□□□□□ -0.6
CD44-223	ENST00000526553	MRPL50	Q8N5N7	158 aa	Known RBP	11.28	□□□□□ -0.6
CD44-223	ENST00000526553	STAC3	Q96MF2	364 aa		11.28	□□□□□ -0.6
CD44-223	ENST00000526553	ZMYND10	O75800	440 aa		11.27	□□□□□ -0.61
CD44-223	ENST00000526553	TATDN2	Q93075	761 aa		11.27	□□□□□ -0.61
CD44-223	ENST00000526553	PNMA3	Q9UL41	463 aa		11.27	□□□□□ -0.61
CD44-223	ENST00000526553	MAP2K5	Q13163	448 aa		11.26	□□□□□ -0.61
CD44-223	ENST00000526553	ADGRG1	Q9Y653	693 aa		11.26	□□□□□ -0.61
CD44-223	ENST00000526553	C3orf80	F5H4A9	247 aa		11.25	□□□□□ -0.61
CD44-223	ENST00000526553	FAM98C	Q17RN3	349 aa	Known RBP	11.25	□□□□□ -0.61
CD44-223	ENST00000526553	BARGIN	Q6ZT62	677 aa		11.25	□□□□□ -0.61
CD44-223	ENST00000526553	NUDT18	Q6ZVK8	323 aa		11.25	□□□□□ -0.61
CD44-223	ENST00000526553	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.25	□□□□□ -0.61
CD44-223	ENST00000526553	MYT1L	Q9UL68	1186 aa		11.24	□□□□□ -0.61
CD44-223	ENST00000526553	RBM46	Q8TBY0	533 aa	Known RBP	11.23	□□□□□ -0.61
CD44-223	ENST00000526553	EYA1	Q99502	592 aa		11.23	□□□□□ -0.61
CD44-223	ENST00000526553	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.23	□□□□□ -0.61
CD44-223	ENST00000526553	SMAP	O00193	183 aa		11.22	□□□□□ -0.61
CD44-223	ENST00000526553	OAT	P04181	439 aa		11.22	□□□□□ -0.61
CD44-223	ENST00000526553	GOLGA8CP	A6NN73	597 aa		11.2	□□□□□ -0.62
CD44-223	ENST00000526553	PXYLP1	Q8TE99	480 aa		11.2	□□□□□ -0.62
CD44-223	ENST00000526553	IRF6	O14896	467 aa		11.19	□□□□□ -0.62
CD44-223	ENST00000526553	MMRN1	Q13201	1228 aa		11.19	□□□□□ -0.62
CD44-223	ENST00000526553	FAM161A	Q3B820	660 aa		11.19	□□□□□ -0.62
CD44-223	ENST00000526553	METTL3	Q86U44	580 aa	Known RBP	11.19	□□□□□ -0.62
CD44-223	ENST00000526553	ZFR	Q96KR1	1074 aa	Known RBP	11.19	□□□□□ -0.62
CD44-223	ENST00000526553	KRI1	Q8N9T8	703 aa	Known RBP	11.17	□□□□□ -0.62
CD44-223	ENST00000526553	CCDC102A	Q96A19	550 aa		11.17	□□□□□ -0.62
CD44-223	ENST00000526553	RNF166	Q96A37	237 aa	Predicted RBP	11.17	□□□□□ -0.62
CD44-223	ENST00000526553	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.16	□□□□□ -0.62
CD44-223	ENST00000526553	DNAJB2	P25686	324 aa		11.16	□□□□□ -0.62
CD44-223	ENST00000526553	ANKK1	Q8NFD2	765 aa		11.16	□□□□□ -0.62
CD44-223	ENST00000526553	WNT2B	Q93097	391 aa		11.16	□□□□□ -0.62
CD44-223	ENST00000526553	RCCD1	A6NED2	376 aa		11.14	□□□□□ -0.63
CD44-223	ENST00000526553	KCTD12	Q96CX2	325 aa	Known RBP	11.14	□□□□□ -0.63
CD44-223	ENST00000526553	TMEM134	Q9H6X4	195 aa		11.13	□□□□□ -0.63
CD44-223	ENST00000526553	SOWAHB	A6NEL2	793 aa		11.12	□□□□□ -0.63
CD44-223	ENST00000526553	THSD4	Q6ZMP0	1018 aa		11.12	□□□□□ -0.63
CD44-223	ENST00000526553	SAMD7	Q7Z3H4	446 aa		11.12	□□□□□ -0.63
CD44-223	ENST00000526553	LRCH3	Q96II8	777 aa		11.12	□□□□□ -0.63
CD44-223	ENST00000526553	PHOX2B	Q99453	314 aa		11.12	□□□□□ -0.63
CD44-223	ENST00000526553	HDGF	P51858	240 aa	Known RBP	11.11	□□□□□ -0.63
CD44-223	ENST00000526553	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.11	□□□□□ -0.63
CD44-223	ENST00000526553	TPRN	Q4KMQ1	711 aa		11.1	□□□□□ -0.63
CD44-223	ENST00000526553	SWT1	Q5T5J6	900 aa	Known RBP	11.1	□□□□□ -0.63
CD44-223	ENST00000526553	AK7	Q96M32	723 aa		11.1	□□□□□ -0.63
CD44-223	ENST00000526553	SLC24A3	Q9HC58	644 aa		11.09	□□□□□ -0.63

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