RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RBM33Q96EV2 1170 aaKnown RBP6.34□□□□□ -1.39
CD44-216ENST00000525293 MYT1LQ9UL68 1186 aa6.34□□□□□ -1.39
CD44-216ENST00000525293 TK2O00142 265 aa6.33□□□□□ -1.4
CD44-216ENST00000525293 NBR1Q14596 966 aa6.33□□□□□ -1.4
CD44-216ENST00000525293 KDM2AQ9Y2K7 1162 aa6.33□□□□□ -1.4
CD44-216ENST00000525293 COL9A1P20849 921 aa6.31□□□□□ -1.4
CD44-216ENST00000525293 C6orf132Q5T0Z8 1188 aa6.31□□□□□ -1.4
CD44-216ENST00000525293 P3H3Q8IVL6 736 aa6.31□□□□□ -1.4
CD44-216ENST00000525293 VPS9D1Q9Y2B5 631 aa6.31□□□□□ -1.4
CD44-216ENST00000525293 MAP3K7O43318 606 aa6.3□□□□□ -1.4
CD44-216ENST00000525293 HRO43593 1189 aa6.3□□□□□ -1.4
CD44-216ENST00000525293 ZBED2Q9BTP6 218 aa6.3□□□□□ -1.4
CD44-216ENST00000525293 PPP1R3GB7ZBB8 358 aa6.29□□□□□ -1.4
CD44-216ENST00000525293 PRIM1P49642 420 aaKnown RBP6.29□□□□□ -1.4
CD44-216ENST00000525293 EN1Q05925 392 aaPredicted RBP6.29□□□□□ -1.4
CD44-216ENST00000525293 TSR1Q2NL82 804 aaKnown RBP6.29□□□□□ -1.4
CD44-216ENST00000525293 VSIG10Q8N0Z9 540 aa6.29□□□□□ -1.4
CD44-216ENST00000525293 STAC3Q96MF2 364 aa6.29□□□□□ -1.4
CD44-216ENST00000525293 SLC4A5Q9BY07 1137 aa6.29□□□□□ -1.4
CD44-216ENST00000525293 OSBPP22059 807 aa6.28□□□□□ -1.4
CD44-216ENST00000525293 MLLT3P42568 568 aaPredicted RBP6.28□□□□□ -1.4
CD44-216ENST00000525293 PROX2Q3B8N5 592 aa6.27□□□□□ -1.41
CD44-216ENST00000525293 BHMG1C9JSJ3 638 aaPredicted RBP6.26□□□□□ -1.41
CD44-216ENST00000525293 SEMA3EO15041 775 aa6.26□□□□□ -1.41
CD44-216ENST00000525293 CDHR5Q9HBB8 845 aa6.24□□□□□ -1.41
CD44-216ENST00000525293 KIAA1468Q9P260 1216 aa6.24□□□□□ -1.41
CD44-216ENST00000525293 RABGEF1Q9UJ41 708 aa6.24□□□□□ -1.41
CD44-216ENST00000525293 TRIM6-TRIM34B2RNG4 842 aa6.23□□□□□ -1.41
CD44-216ENST00000525293 MRPL50Q8N5N7 158 aaKnown RBP6.23□□□□□ -1.41
CD44-216ENST00000525293 KCTD12Q96CX2 325 aaKnown RBP6.23□□□□□ -1.41
CD44-216ENST00000525293 NBPF3Q9H094 633 aa6.23□□□□□ -1.41
CD44-216ENST00000525293 GOLGA8CPA6NN73 597 aa6.22□□□□□ -1.41
CD44-216ENST00000525293 ONECUT3O60422 494 aaPredicted RBP6.22□□□□□ -1.41
CD44-216ENST00000525293 CERKQ8TCT0 537 aa6.21□□□□□ -1.42
CD44-216ENST00000525293 CDCA7LQ96GN5 454 aa6.21□□□□□ -1.42
CD44-216ENST00000525293 TSKSQ9UJT2 592 aa6.21□□□□□ -1.42
CD44-216ENST00000525293 TESPA1A2RU30 521 aaPredicted RBP6.2□□□□□ -1.42
CD44-216ENST00000525293 PRSS12P56730 875 aa6.2□□□□□ -1.42
CD44-216ENST00000525293 PACS2Q86VP3 889 aa6.2□□□□□ -1.42
CD44-216ENST00000525293 NPDC1Q9NQX5 325 aaPredicted RBP6.2□□□□□ -1.42
CD44-216ENST00000525293 SEPT9Q9UHD8 586 aaPredicted RBP6.2□□□□□ -1.42
CD44-216ENST00000525293 WNT2BQ93097 391 aa6.19□□□□□ -1.42
CD44-216ENST00000525293 FAM198AQ9UFP1 575 aa6.19□□□□□ -1.42
CD44-216ENST00000525293 NUTM2FA1L443 756 aa6.18□□□□□ -1.42
CD44-216ENST00000525293 SMYD5Q6GMV2 418 aa6.18□□□□□ -1.42
CD44-216ENST00000525293 HCSTQ9UBK5 93 aa6.18□□□□□ -1.42
CD44-216ENST00000525293 SMAPO00193 183 aa6.17□□□□□ -1.42
CD44-216ENST00000525293 PTPN5P54829 565 aa6.17□□□□□ -1.42
CD44-216ENST00000525293 LAPTM4BQ86VI4 370 aa6.17□□□□□ -1.42
CD44-216ENST00000525293 C3orf80F5H4A9 247 aa6.16□□□□□ -1.42
CD44-216ENST00000525293 PTGDRQ13258 359 aa6.16□□□□□ -1.42
CD44-216ENST00000525293 RBM26Q5T8P6 1007 aaKnown RBP6.16□□□□□ -1.42
CD44-216ENST00000525293 PADI6Q6TGC4 694 aa6.16□□□□□ -1.42
CD44-216ENST00000525293 THSD4Q6ZMP0 1018 aa6.16□□□□□ -1.42
CD44-216ENST00000525293 TATDN2Q93075 761 aa6.16□□□□□ -1.42
CD44-216ENST00000525293 ZFRQ96KR1 1074 aaKnown RBP6.16□□□□□ -1.42
CD44-216ENST00000525293 FAM98CQ17RN3 349 aaKnown RBP6.15□□□□□ -1.42
CD44-216ENST00000525293 ANKK1Q8NFD2 765 aa6.15□□□□□ -1.42
CD44-216ENST00000525293 PNMA3Q9UL41 463 aa6.15□□□□□ -1.42
CD44-216ENST00000525293 NBPF26B4DH59 902 aa6.14□□□□□ -1.43
CD44-216ENST00000525293 BCAMP50895 628 aa6.14□□□□□ -1.43
CD44-216ENST00000525293 NUDT18Q6ZVK8 323 aa6.14□□□□□ -1.43
CD44-216ENST00000525293 TTC13Q8NBP0 860 aa6.14□□□□□ -1.43
CD44-216ENST00000525293 PLA2G2EQ9NZK7 142 aa6.14□□□□□ -1.43
CD44-216ENST00000525293 RBM27Q9P2N5 1060 aaKnown RBP6.14□□□□□ -1.43
CD44-216ENST00000525293 FCHSD2O94868 740 aa6.13□□□□□ -1.43
CD44-216ENST00000525293 SOWAHBA6NEL2 793 aa6.12□□□□□ -1.43
CD44-216ENST00000525293 SAMD7Q7Z3H4 446 aa6.11□□□□□ -1.43
CD44-216ENST00000525293 LRCH3Q96II8 777 aa6.11□□□□□ -1.43
CD44-216ENST00000525293 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.11□□□□□ -1.43
CD44-216ENST00000525293 FAM161AQ3B820 660 aa6.1□□□□□ -1.43
CD44-216ENST00000525293 TULP1O00294 542 aaPredicted RBP6.09□□□□□ -1.43
CD44-216ENST00000525293 HDGFP51858 240 aaKnown RBP6.09□□□□□ -1.43
CD44-216ENST00000525293 HIC1Q14526 733 aa6.09□□□□□ -1.43
CD44-216ENST00000525293 EYA1Q99502 592 aa6.09□□□□□ -1.43
CD44-216ENST00000525293 WBP1LQ9NX94 342 aa6.09□□□□□ -1.43
CD44-216ENST00000525293 HPS5Q9UPZ3 1129 aa6.09□□□□□ -1.43
CD44-216ENST00000525293 FECHP22830 423 aa6.08□□□□□ -1.44
CD44-216ENST00000525293 GPIHBP1Q8IV16 184 aa6.08□□□□□ -1.44
CD44-216ENST00000525293 TSR3Q9UJK0 312 aaKnown RBP6.08□□□□□ -1.44
CD44-216ENST00000525293 ADGRG1Q9Y653 693 aa6.08□□□□□ -1.44
CD44-216ENST00000525293 GNPATO15228 680 aa6.07□□□□□ -1.44
CD44-216ENST00000525293 GPR37O15354 613 aa6.07□□□□□ -1.44
CD44-216ENST00000525293 PPP4CP60510 307 aa6.07□□□□□ -1.44
CD44-216ENST00000525293 SWT1Q5T5J6 900 aaKnown RBP6.07□□□□□ -1.44
CD44-216ENST00000525293 RBM46Q8TBY0 533 aaKnown RBP6.07□□□□□ -1.44
CD44-216ENST00000525293 RNF40O75150 1001 aa6.06□□□□□ -1.44
CD44-216ENST00000525293 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.05□□□□□ -1.44
CD44-216ENST00000525293 RCCD1A6NED2 376 aa6.04□□□□□ -1.44
CD44-216ENST00000525293 OATP04181 439 aa6.04□□□□□ -1.44
CD44-216ENST00000525293 DNAJB2P25686 324 aa6.04□□□□□ -1.44
CD44-216ENST00000525293 NYAP1Q6ZVC0 841 aa6.04□□□□□ -1.44
CD44-216ENST00000525293 PXYLP1Q8TE99 480 aa6.03□□□□□ -1.44
CD44-216ENST00000525293 SLC24A1O60721 1099 aa6.02□□□□□ -1.45
CD44-216ENST00000525293 SLC4A3P48751 1232 aa6.02□□□□□ -1.45
CD44-216ENST00000525293 LMOD2Q6P5Q4 547 aa6.02□□□□□ -1.45
CD44-216ENST00000525293 METTL3Q86U44 580 aaKnown RBP6.02□□□□□ -1.45
CD44-216ENST00000525293 SLF2Q8IX21 1173 aa6.02□□□□□ -1.45
CD44-216ENST00000525293 TMEM134Q9H6X4 195 aa6.02□□□□□ -1.45
CD44-216ENST00000525293 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms