RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	5.41	□□□□□ -1.54
CD44-212	ENST00000524922	KCNH8	Q96L42	1107 aa		5.41	□□□□□ -1.54
CD44-212	ENST00000524922	EPAS1	Q99814	870 aa		5.41	□□□□□ -1.54
CD44-212	ENST00000524922	RABGEF1	Q9UJ41	708 aa		5.41	□□□□□ -1.54
CD44-212	ENST00000524922	DDX12P	Q92771	950 aa		5.4	□□□□□ -1.54
CD44-212	ENST00000524922	PLA2G2E	Q9NZK7	142 aa		5.4	□□□□□ -1.54
CD44-212	ENST00000524922	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	5.4	□□□□□ -1.54
CD44-212	ENST00000524922	EN1	Q05925	392 aa	Predicted RBP	5.39	□□□□□ -1.55
CD44-212	ENST00000524922	E2F4	Q16254	413 aa		5.39	□□□□□ -1.55
CD44-212	ENST00000524922	SPDYE16	A6NNV3	312 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-212	ENST00000524922	C3orf80	F5H4A9	247 aa		5.38	□□□□□ -1.55
CD44-212	ENST00000524922	ONECUT3	O60422	494 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-212	ENST00000524922	TSR1	Q2NL82	804 aa	Known RBP	5.38	□□□□□ -1.55
CD44-212	ENST00000524922	MRPL50	Q8N5N7	158 aa	Known RBP	5.38	□□□□□ -1.55
CD44-212	ENST00000524922	CFAP44	Q96MT7	982 aa		5.38	□□□□□ -1.55
CD44-212	ENST00000524922	FAM198A	Q9UFP1	575 aa		5.38	□□□□□ -1.55
CD44-212	ENST00000524922	TRIM6-TRIM34	B2RNG4	842 aa		5.37	□□□□□ -1.55
CD44-212	ENST00000524922	IFFO2	Q5TF58	517 aa		5.37	□□□□□ -1.55
CD44-212	ENST00000524922	NBPF3	Q9H094	633 aa		5.37	□□□□□ -1.55
CD44-212	ENST00000524922	KIAA1468	Q9P260	1216 aa		5.37	□□□□□ -1.55
CD44-212	ENST00000524922	OSBP	P22059	807 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	PTPN5	P54829	565 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	LAPTM4B	Q86VI4	370 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	WNT2B	Q93097	391 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	RBM33	Q96EV2	1170 aa	Known RBP	5.36	□□□□□ -1.55
CD44-212	ENST00000524922	TSHZ2	Q9NRE2	1034 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	TSKS	Q9UJT2	592 aa		5.36	□□□□□ -1.55
CD44-212	ENST00000524922	NBR1	Q14596	966 aa		5.35	□□□□□ -1.55
CD44-212	ENST00000524922	SOWAHB	A6NEL2	793 aa		5.34	□□□□□ -1.55
CD44-212	ENST00000524922	ZFR	Q96KR1	1074 aa	Known RBP	5.34	□□□□□ -1.55
CD44-212	ENST00000524922	STAC3	Q96MF2	364 aa		5.34	□□□□□ -1.55
CD44-212	ENST00000524922	SEPT9	Q9UHD8	586 aa	Predicted RBP	5.34	□□□□□ -1.55
CD44-212	ENST00000524922	BCAM	P50895	628 aa		5.33	□□□□□ -1.56
CD44-212	ENST00000524922	CDHR5	Q9HBB8	845 aa		5.33	□□□□□ -1.56
CD44-212	ENST00000524922	NPDC1	Q9NQX5	325 aa	Predicted RBP	5.33	□□□□□ -1.56
CD44-212	ENST00000524922	MAP3K7	O43318	606 aa		5.32	□□□□□ -1.56
CD44-212	ENST00000524922	ITGBL1	O95965	494 aa	Predicted RBP	5.32	□□□□□ -1.56
CD44-212	ENST00000524922	FAM98C	Q17RN3	349 aa	Known RBP	5.32	□□□□□ -1.56
CD44-212	ENST00000524922	TTC13	Q8NBP0	860 aa		5.32	□□□□□ -1.56
CD44-212	ENST00000524922	PRSS12	P56730	875 aa		5.31	□□□□□ -1.56
CD44-212	ENST00000524922	ANKK1	Q8NFD2	765 aa		5.31	□□□□□ -1.56
CD44-212	ENST00000524922	KCNV2	Q8TDN2	545 aa		5.31	□□□□□ -1.56
CD44-212	ENST00000524922	CDCA7L	Q96GN5	454 aa		5.31	□□□□□ -1.56
CD44-212	ENST00000524922	WBP1L	Q9NX94	342 aa		5.31	□□□□□ -1.56
CD44-212	ENST00000524922	GRXCR2	A6NFK2	248 aa		5.3	□□□□□ -1.56
CD44-212	ENST00000524922	GOLGA8CP	A6NN73	597 aa		5.3	□□□□□ -1.56
CD44-212	ENST00000524922		A0A0G2JS52	829 aa		5.29	□□□□□ -1.56
CD44-212	ENST00000524922	MLLT3	P42568	568 aa	Predicted RBP	5.29	□□□□□ -1.56
CD44-212	ENST00000524922	WDR70	Q9NW82	654 aa		5.29	□□□□□ -1.56
CD44-212	ENST00000524922	RBM27	Q9P2N5	1060 aa	Known RBP	5.29	□□□□□ -1.56
CD44-212	ENST00000524922	SMAP	O00193	183 aa		5.28	□□□□□ -1.56
CD44-212	ENST00000524922	CERK	Q8TCT0	537 aa		5.28	□□□□□ -1.56
CD44-212	ENST00000524922	ARHGEF1	Q92888	912 aa	Known RBP	5.28	□□□□□ -1.56
CD44-212	ENST00000524922	NYAP1	Q6ZVC0	841 aa		5.27	□□□□□ -1.57
CD44-212	ENST00000524922	PACS2	Q86VP3	889 aa		5.27	□□□□□ -1.57
CD44-212	ENST00000524922	TATDN2	Q93075	761 aa		5.26	□□□□□ -1.57
CD44-212	ENST00000524922	TSR3	Q9UJK0	312 aa	Known RBP	5.26	□□□□□ -1.57
CD44-212	ENST00000524922	RGS20	O76081	388 aa		5.25	□□□□□ -1.57
CD44-212	ENST00000524922	SAMD7	Q7Z3H4	446 aa		5.25	□□□□□ -1.57
CD44-212	ENST00000524922	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-212	ENST00000524922	PADI6	Q6TGC4	694 aa		5.24	□□□□□ -1.57
CD44-212	ENST00000524922	LRCH3	Q96II8	777 aa		5.24	□□□□□ -1.57
CD44-212	ENST00000524922	EYA1	Q99502	592 aa		5.24	□□□□□ -1.57
CD44-212	ENST00000524922	HPS5	Q9UPZ3	1129 aa		5.24	□□□□□ -1.57
CD44-212	ENST00000524922	PTGDR	Q13258	359 aa		5.23	□□□□□ -1.57
CD44-212	ENST00000524922	TJAP1	Q5JTD0	557 aa		5.23	□□□□□ -1.57
CD44-212	ENST00000524922	NUDT18	Q6ZVK8	323 aa		5.23	□□□□□ -1.57
CD44-212	ENST00000524922	PNMA3	Q9UL41	463 aa		5.23	□□□□□ -1.57
CD44-212	ENST00000524922	NBPF26	B4DH59	902 aa		5.22	□□□□□ -1.57
CD44-212	ENST00000524922	SEMA3E	O15041	775 aa		5.21	□□□□□ -1.58
CD44-212	ENST00000524922	PLCB2	Q00722	1185 aa		5.21	□□□□□ -1.58
CD44-212	ENST00000524922	APLP1	P51693	650 aa		5.2	□□□□□ -1.58
CD44-212	ENST00000524922	KCNC4	Q03721	635 aa		5.2	□□□□□ -1.58
CD44-212	ENST00000524922	GPR37	O15354	613 aa		5.19	□□□□□ -1.58
CD44-212	ENST00000524922	PPP4C	P60510	307 aa		5.19	□□□□□ -1.58
CD44-212	ENST00000524922	ADGRG1	Q9Y653	693 aa		5.19	□□□□□ -1.58
CD44-212	ENST00000524922	TESPA1	A2RU30	521 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-212	ENST00000524922	SWT1	Q5T5J6	900 aa	Known RBP	5.18	□□□□□ -1.58
CD44-212	ENST00000524922	MTR	Q99707	1265 aa		5.18	□□□□□ -1.58
CD44-212	ENST00000524922	ZNF516	Q92618	1163 aa		5.17	□□□□□ -1.58
CD44-212	ENST00000524922	KDM2A	Q9Y2K7	1162 aa		5.17	□□□□□ -1.58
CD44-212	ENST00000524922	FAM161A	Q3B820	660 aa		5.16	□□□□□ -1.58
CD44-212	ENST00000524922	P3H3	Q8IVL6	736 aa		5.16	□□□□□ -1.58
CD44-212	ENST00000524922	TMEM134	Q9H6X4	195 aa		5.16	□□□□□ -1.58
CD44-212	ENST00000524922	LCE2B	O14633	110 aa		5.15	□□□□□ -1.59
CD44-212	ENST00000524922	FECH	P22830	423 aa		5.14	□□□□□ -1.59
CD44-212	ENST00000524922	NKX2-3	Q8TAU0	364 aa		5.14	□□□□□ -1.59
CD44-212	ENST00000524922	IL21	Q9HBE4	155 aa		5.14	□□□□□ -1.59
CD44-212	ENST00000524922	RCCD1	A6NED2	376 aa		5.13	□□□□□ -1.59
CD44-212	ENST00000524922	SLC10A3	P09131	477 aa		5.13	□□□□□ -1.59
CD44-212	ENST00000524922	DNAJB2	P25686	324 aa		5.13	□□□□□ -1.59
CD44-212	ENST00000524922	RBM26	Q5T8P6	1007 aa	Known RBP	5.13	□□□□□ -1.59
CD44-212	ENST00000524922	SLF2	Q8IX21	1173 aa		5.13	□□□□□ -1.59
CD44-212	ENST00000524922	PXYLP1	Q8TE99	480 aa		5.13	□□□□□ -1.59
CD44-212	ENST00000524922	NUTM2F	A1L443	756 aa		5.12	□□□□□ -1.59
CD44-212	ENST00000524922	FCHSD2	O94868	740 aa		5.12	□□□□□ -1.59
CD44-212	ENST00000524922	PPP1R18	Q6NYC8	613 aa		5.12	□□□□□ -1.59
CD44-212	ENST00000524922	EMID1	Q96A84	441 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-212	ENST00000524922	IRX2	Q9BZI1	471 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-212	ENST00000524922	HIC1	Q14526	733 aa		5.11	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 55 ms