RNA–Protein interactions for RNA: ENST00000523359.1

SKP1-211, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-211ENST00000523359 SLC4A5Q9BY07 1137 aa11.61□□□□□ -0.55
SKP1-211ENST00000523359 DDX12PQ92771 950 aa11.58□□□□□ -0.56
SKP1-211ENST00000523359 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
SKP1-211ENST00000523359 WDR70Q9NW82 654 aa11.58□□□□□ -0.56
SKP1-211ENST00000523359 HCSTQ9UBK5 93 aa11.58□□□□□ -0.56
SKP1-211ENST00000523359 PPP1R3GB7ZBB8 358 aa11.57□□□□□ -0.56
SKP1-211ENST00000523359 E2F4Q16254 413 aa11.57□□□□□ -0.56
SKP1-211ENST00000523359 BHMG1C9JSJ3 638 aaPredicted RBP11.56□□□□□ -0.56
SKP1-211ENST00000523359 COL9A1P20849 921 aa11.56□□□□□ -0.56
SKP1-211ENST00000523359 PDIA6Q15084 440 aa11.55□□□□□ -0.56
SKP1-211ENST00000523359 EPAS1Q99814 870 aa11.55□□□□□ -0.56
SKP1-211ENST00000523359 PROX2Q3B8N5 592 aa11.54□□□□□ -0.56
SKP1-211ENST00000523359 RBM33Q96EV2 1170 aaKnown RBP11.54□□□□□ -0.56
SKP1-211ENST00000523359 MRPL50Q8N5N7 158 aaKnown RBP11.53□□□□□ -0.56
SKP1-211ENST00000523359 C6orf132Q5T0Z8 1188 aa11.52□□□□□ -0.57
SKP1-211ENST00000523359 NBR1Q14596 966 aa11.51□□□□□ -0.57
SKP1-211ENST00000523359 GOLGA8CPA6NN73 597 aa11.5□□□□□ -0.57
SKP1-211ENST00000523359 SPDYE16A6NNV3 312 aaPredicted RBP11.5□□□□□ -0.57
SKP1-211ENST00000523359 NBPF3Q9H094 633 aa11.5□□□□□ -0.57
SKP1-211ENST00000523359 PTPN5P54829 565 aa11.49□□□□□ -0.57
SKP1-211ENST00000523359 P3H3Q8IVL6 736 aa11.49□□□□□ -0.57
SKP1-211ENST00000523359 KCNV2Q8TDN2 545 aa11.48□□□□□ -0.57
SKP1-211ENST00000523359 RABGEF1Q9UJ41 708 aa11.48□□□□□ -0.57
SKP1-211ENST00000523359 WNT2BQ93097 391 aa11.47□□□□□ -0.57
SKP1-211ENST00000523359 PLA2G2EQ9NZK7 142 aa11.47□□□□□ -0.57
SKP1-211ENST00000523359 MAP3K7O43318 606 aa11.46□□□□□ -0.57
SKP1-211ENST00000523359 ARIH1Q9Y4X5 557 aaPredicted RBP11.46□□□□□ -0.57
SKP1-211ENST00000523359 EN1Q05925 392 aaPredicted RBP11.45□□□□□ -0.58
SKP1-211ENST00000523359 TSR1Q2NL82 804 aaKnown RBP11.45□□□□□ -0.58
SKP1-211ENST00000523359 THSD4Q6ZMP0 1018 aa11.45□□□□□ -0.58
SKP1-211ENST00000523359 GRXCR2A6NFK2 248 aa11.44□□□□□ -0.58
SKP1-211ENST00000523359 KIAA1468Q9P260 1216 aa11.44□□□□□ -0.58
SKP1-211ENST00000523359 PRIM1P49642 420 aaKnown RBP11.41□□□□□ -0.58
SKP1-211ENST00000523359 TRIM6-TRIM34B2RNG4 842 aa11.4□□□□□ -0.58
SKP1-211ENST00000523359 SEPT9Q9UHD8 586 aaPredicted RBP11.4□□□□□ -0.58
SKP1-211ENST00000523359 ONECUT3O60422 494 aaPredicted RBP11.38□□□□□ -0.59
SKP1-211ENST00000523359 ANKK1Q8NFD2 765 aa11.38□□□□□ -0.59
SKP1-211ENST00000523359 LAPTM4BQ86VI4 370 aa11.37□□□□□ -0.59
SKP1-211ENST00000523359 ZFRQ96KR1 1074 aaKnown RBP11.36□□□□□ -0.59
SKP1-211ENST00000523359 OSBPP22059 807 aa11.35□□□□□ -0.59
SKP1-211ENST00000523359 BCAMP50895 628 aa11.35□□□□□ -0.59
SKP1-211ENST00000523359 TSKSQ9UJT2 592 aa11.35□□□□□ -0.59
SKP1-211ENST00000523359 PRKCSHP14314 528 aaPredicted RBP11.34□□□□□ -0.59
SKP1-211ENST00000523359 ARHGEF1Q92888 912 aaKnown RBP11.34□□□□□ -0.59
SKP1-211ENST00000523359 CDHR5Q9HBB8 845 aa11.33□□□□□ -0.6
SKP1-211ENST00000523359 CDCA7LQ96GN5 454 aa11.32□□□□□ -0.6
SKP1-211ENST00000523359 SOWAHBA6NEL2 793 aa11.31□□□□□ -0.6
SKP1-211ENST00000523359 FAM98CQ17RN3 349 aaKnown RBP11.31□□□□□ -0.6
SKP1-211ENST00000523359 TPRNQ4KMQ1 711 aa11.31□□□□□ -0.6
SKP1-211ENST00000523359 PACS2Q86VP3 889 aa11.31□□□□□ -0.6
SKP1-211ENST00000523359 PRSS12P56730 875 aa11.3□□□□□ -0.6
SKP1-211ENST00000523359 SMAPO00193 183 aa11.29□□□□□ -0.6
SKP1-211ENST00000523359 FAM198AQ9UFP1 575 aa11.29□□□□□ -0.6
SKP1-211ENST00000523359 MLLT3P42568 568 aaPredicted RBP11.28□□□□□ -0.6
SKP1-211ENST00000523359 CERKQ8TCT0 537 aa11.28□□□□□ -0.6
SKP1-211ENST00000523359 C3orf80F5H4A9 247 aa11.26□□□□□ -0.61
SKP1-211ENST00000523359 WBP1LQ9NX94 342 aa11.26□□□□□ -0.61
SKP1-211ENST00000523359 LRCH3Q96II8 777 aa11.25□□□□□ -0.61
SKP1-211ENST00000523359 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.25□□□□□ -0.61
SKP1-211ENST00000523359 SEMA3EO15041 775 aa11.24□□□□□ -0.61
SKP1-211ENST00000523359 TATDN2Q93075 761 aa11.23□□□□□ -0.61
SKP1-211ENST00000523359 PNMA3Q9UL41 463 aa11.23□□□□□ -0.61
SKP1-211ENST00000523359 HPS5Q9UPZ3 1129 aa11.23□□□□□ -0.61
SKP1-211ENST00000523359 NBPF26B4DH59 902 aa11.22□□□□□ -0.61
SKP1-211ENST00000523359 NPDC1Q9NQX5 325 aaPredicted RBP11.21□□□□□ -0.61
SKP1-211ENST00000523359 TSR3Q9UJK0 312 aaKnown RBP11.21□□□□□ -0.61
SKP1-211ENST00000523359 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
SKP1-211ENST00000523359 PADI6Q6TGC4 694 aa11.2□□□□□ -0.62
SKP1-211ENST00000523359 SAMD7Q7Z3H4 446 aa11.2□□□□□ -0.62
SKP1-211ENST00000523359 RBM27Q9P2N5 1060 aaKnown RBP11.2□□□□□ -0.62
SKP1-211ENST00000523359 TESPA1A2RU30 521 aaPredicted RBP11.19□□□□□ -0.62
SKP1-211ENST00000523359 NYAP1Q6ZVC0 841 aa11.19□□□□□ -0.62
SKP1-211ENST00000523359 NUDT18Q6ZVK8 323 aa11.19□□□□□ -0.62
SKP1-211ENST00000523359 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.18□□□□□ -0.62
SKP1-211ENST00000523359 LMOD2Q6P5Q4 547 aa11.17□□□□□ -0.62
SKP1-211ENST00000523359 ITGBL1O95965 494 aaPredicted RBP11.16□□□□□ -0.62
SKP1-211ENST00000523359 A0A0G2JS52 829 aa11.15□□□□□ -0.62
SKP1-211ENST00000523359 TULP1O00294 542 aaPredicted RBP11.15□□□□□ -0.62
SKP1-211ENST00000523359 PPP4CP60510 307 aa11.15□□□□□ -0.62
SKP1-211ENST00000523359 TTC13Q8NBP0 860 aa11.15□□□□□ -0.62
SKP1-211ENST00000523359 RNF40O75150 1001 aa11.13□□□□□ -0.63
SKP1-211ENST00000523359 NUTM2FA1L443 756 aa11.11□□□□□ -0.63
SKP1-211ENST00000523359 KCNC4Q03721 635 aa11.1□□□□□ -0.63
SKP1-211ENST00000523359 PTGDRQ13258 359 aa11.1□□□□□ -0.63
SKP1-211ENST00000523359 SMYD5Q6GMV2 418 aa11.1□□□□□ -0.63
SKP1-211ENST00000523359 HDGFP51858 240 aaKnown RBP11.09□□□□□ -0.63
SKP1-211ENST00000523359 SWT1Q5T5J6 900 aaKnown RBP11.08□□□□□ -0.64
SKP1-211ENST00000523359 EYA1Q99502 592 aa11.07□□□□□ -0.64
SKP1-211ENST00000523359 RGS20O76081 388 aa11.03□□□□□ -0.64
SKP1-211ENST00000523359 APLP1P51693 650 aa11.02□□□□□ -0.65
SKP1-211ENST00000523359 FAM161AQ3B820 660 aa11.02□□□□□ -0.65
SKP1-211ENST00000523359 TJAP1Q5JTD0 557 aa11.02□□□□□ -0.65
SKP1-211ENST00000523359 SLF2Q8IX21 1173 aa11.02□□□□□ -0.65
SKP1-211ENST00000523359 MTRQ99707 1265 aa11.02□□□□□ -0.65
SKP1-211ENST00000523359 FCHSD2O94868 740 aa11.01□□□□□ -0.65
SKP1-211ENST00000523359 RBM26Q5T8P6 1007 aaKnown RBP11.01□□□□□ -0.65
SKP1-211ENST00000523359 ZC3H15Q8WU90 426 aaKnown RBP11.01□□□□□ -0.65
SKP1-211ENST00000523359 ADGRG1Q9Y653 693 aa11.01□□□□□ -0.65
SKP1-211ENST00000523359 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
SKP1-211ENST00000523359 DNAJB2P25686 324 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms