RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 SAFB2Q14151 953 aaKnown RBP eCLIP17.58■□□□□ 0.41
SYNPO-205ENST00000522122 CTTNBP2Q8WZ74 1663 aa17.58■□□□□ 0.4
SYNPO-205ENST00000522122 GRIN2BQ13224 1484 aa17.58■□□□□ 0.4
SYNPO-205ENST00000522122 DNTTIP2Q5QJE6 756 aaKnown RBP17.58■□□□□ 0.4
SYNPO-205ENST00000522122 EFCAB2Q5VUJ9 269 aa17.58■□□□□ 0.4
SYNPO-205ENST00000522122 ANKRD50Q9ULJ7 1429 aa17.57■□□□□ 0.4
SYNPO-205ENST00000522122 NCOA1Q15788 1441 aa17.57■□□□□ 0.4
SYNPO-205ENST00000522122 TPRNQ4KMQ1 711 aa17.56■□□□□ 0.4
SYNPO-205ENST00000522122 L1TD1Q5T7N2 865 aaKnown RBP17.56■□□□□ 0.4
SYNPO-205ENST00000522122 GGT6Q6P531 493 aa17.56■□□□□ 0.4
SYNPO-205ENST00000522122 IPO8O15397 1037 aaKnown RBP17.56■□□□□ 0.4
SYNPO-205ENST00000522122 GOLGA2Q08379 1002 aa17.56■□□□□ 0.4
SYNPO-205ENST00000522122 CCDC184Q52MB2 194 aa17.56■□□□□ 0.4
SYNPO-205ENST00000522122 AKNAQ7Z591 1439 aa17.56■□□□□ 0.4
SYNPO-205ENST00000522122 U2AF1L5P0DN76 240 aaPredicted RBP17.55■□□□□ 0.4
SYNPO-205ENST00000522122 U2AF1Q01081 240 aaKnown RBP eCLIP17.55■□□□□ 0.4
SYNPO-205ENST00000522122 ZRSR1Q15695 479 aaKnown RBP17.55■□□□□ 0.4
SYNPO-205ENST00000522122 CENPQQ7L2Z9 268 aaPredicted RBP17.54■□□□□ 0.4
SYNPO-205ENST00000522122 RWDD1Q9H446 243 aaPredicted RBP17.54■□□□□ 0.4
SYNPO-205ENST00000522122 HAP1P54257 671 aaPredicted RBP17.54■□□□□ 0.4
SYNPO-205ENST00000522122 CDK13Q14004 1512 aaKnown RBP17.54■□□□□ 0.4
SYNPO-205ENST00000522122 SPRYD3Q8NCJ5 442 aa17.54■□□□□ 0.4
SYNPO-205ENST00000522122 A0A0G2JS52 829 aa17.53■□□□□ 0.4
SYNPO-205ENST00000522122 MSH5O43196 834 aa17.53■□□□□ 0.4
SYNPO-205ENST00000522122 IQGAP2Q13576 1575 aa17.53■□□□□ 0.4
SYNPO-205ENST00000522122 PANK3Q9H999 370 aa17.53■□□□□ 0.4
SYNPO-205ENST00000522122 ANKRD30BQ9BXX2 1392 aa17.52■□□□□ 0.39
SYNPO-205ENST00000522122 UGGT2Q9NYU1 1516 aa17.52■□□□□ 0.39
SYNPO-205ENST00000522122 CRBNQ96SW2 442 aa17.52■□□□□ 0.39
SYNPO-205ENST00000522122 CFAP44Q96MT7 982 aa17.51■□□□□ 0.39
SYNPO-205ENST00000522122 PTPRKQ15262 1439 aa17.51■□□□□ 0.39
SYNPO-205ENST00000522122 STK26Q9P289 416 aa17.51■□□□□ 0.39
SYNPO-205ENST00000522122 OS9Q13438 667 aaPredicted RBP17.5■□□□□ 0.39
SYNPO-205ENST00000522122 JPH4Q96JJ6 628 aa17.5■□□□□ 0.39
SYNPO-205ENST00000522122 PLCB2Q00722 1185 aa17.5■□□□□ 0.39
SYNPO-205ENST00000522122 HDGFL2Q7Z4V5 671 aaPredicted RBP17.5■□□□□ 0.39
SYNPO-205ENST00000522122 LAMC3Q9Y6N6 1575 aa17.49■□□□□ 0.39
SYNPO-205ENST00000522122 SLKQ9H2G2 1235 aaPredicted RBP17.49■□□□□ 0.39
SYNPO-205ENST00000522122 RPRD2Q5VT52 1461 aaKnown RBP17.48■□□□□ 0.39
SYNPO-205ENST00000522122 FAM161AQ3B820 660 aa17.48■□□□□ 0.39
SYNPO-205ENST00000522122 PMFBP1Q8TBY8 1022 aa17.48■□□□□ 0.39
SYNPO-205ENST00000522122 HDGFP51858 240 aaKnown RBP17.48■□□□□ 0.39
SYNPO-205ENST00000522122 PLIN1O60240 522 aa17.48■□□□□ 0.39
SYNPO-205ENST00000522122 TROQ12816 1431 aaPredicted RBP17.47■□□□□ 0.39
SYNPO-205ENST00000522122 LMOD2Q6P5Q4 547 aa17.47■□□□□ 0.39
SYNPO-205ENST00000522122 KCNJ4P48050 445 aa17.47■□□□□ 0.39
SYNPO-205ENST00000522122 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
SYNPO-205ENST00000522122 ITPRIPQ8IWB1 547 aa17.46■□□□□ 0.39
SYNPO-205ENST00000522122 PNISRQ8TF01 805 aaKnown RBP17.46■□□□□ 0.39
SYNPO-205ENST00000522122 KIF3BO15066 747 aa17.46■□□□□ 0.38
SYNPO-205ENST00000522122 SOX12O15370 315 aa17.45■□□□□ 0.38
SYNPO-205ENST00000522122 CALD1Q05682 793 aaKnown RBP17.45■□□□□ 0.38
SYNPO-205ENST00000522122 ABCC5O15440 1437 aa17.45■□□□□ 0.38
SYNPO-205ENST00000522122 C11orf95C9JLR9 678 aaPredicted RBP17.45■□□□□ 0.38
SYNPO-205ENST00000522122 TCOF1Q13428 1488 aaKnown RBP17.45■□□□□ 0.38
SYNPO-205ENST00000522122 MCCP23508 829 aa17.44■□□□□ 0.38
SYNPO-205ENST00000522122 CCDC146Q8IYE0 955 aa17.44■□□□□ 0.38
SYNPO-205ENST00000522122 MRC2Q9UBG0 1479 aa17.44■□□□□ 0.38
SYNPO-205ENST00000522122 FGD1P98174 961 aa17.44■□□□□ 0.38
SYNPO-205ENST00000522122 C9orf84Q5VXU9 1444 aa17.43■□□□□ 0.38
SYNPO-205ENST00000522122 CENPJQ9HC77 1338 aaPredicted RBP17.43■□□□□ 0.38
SYNPO-205ENST00000522122 GBP4Q96PP9 640 aa17.42■□□□□ 0.38
SYNPO-205ENST00000522122 IFT140Q96RY7 1462 aa17.42■□□□□ 0.38
SYNPO-205ENST00000522122 RTF1Q92541 710 aaKnown RBP17.42■□□□□ 0.38
SYNPO-205ENST00000522122 CAMSAP2Q08AD1 1489 aa17.42■□□□□ 0.38
SYNPO-205ENST00000522122 CLUAP1Q96AJ1 413 aa17.42■□□□□ 0.38
SYNPO-205ENST00000522122 MLECQ14165 292 aa17.42■□□□□ 0.38
SYNPO-205ENST00000522122 SMC4Q9NTJ3 1288 aa17.41■□□□□ 0.38
SYNPO-205ENST00000522122 PRG4Q92954 1404 aaPredicted RBP17.41■□□□□ 0.38
SYNPO-205ENST00000522122 WASHC2CQ9Y4E1 1318 aa17.4■□□□□ 0.38
SYNPO-205ENST00000522122 APBB1O00213 710 aa17.4■□□□□ 0.38
SYNPO-205ENST00000522122 GSE1Q14687 1217 aa17.4■□□□□ 0.38
SYNPO-205ENST00000522122 SPAG9O60271 1321 aaKnown RBP17.4■□□□□ 0.38
SYNPO-205ENST00000522122 URB2Q14146 1524 aaKnown RBP17.4■□□□□ 0.38
SYNPO-205ENST00000522122 PAK3O75914 559 aaPredicted RBP17.4■□□□□ 0.38
SYNPO-205ENST00000522122 MSNP26038 577 aaKnown RBP17.4■□□□□ 0.38
SYNPO-205ENST00000522122 GOLGA6L4A6NEF3 574 aa17.39■□□□□ 0.37
SYNPO-205ENST00000522122 E9PSI1 815 aa17.39■□□□□ 0.37
SYNPO-205ENST00000522122 GZF1Q9H116 711 aaPredicted RBP17.39■□□□□ 0.37
SYNPO-205ENST00000522122 KIF21AQ7Z4S6 1674 aa17.38■□□□□ 0.37
SYNPO-205ENST00000522122 PTPRGP23470 1445 aa17.38■□□□□ 0.37
SYNPO-205ENST00000522122 MFAP1P55081 439 aaKnown RBP17.38■□□□□ 0.37
SYNPO-205ENST00000522122 KIAA0586Q9BVV6 1533 aa17.38■□□□□ 0.37
SYNPO-205ENST00000522122 CDK11BP21127 795 aaKnown RBP17.37■□□□□ 0.37
SYNPO-205ENST00000522122 PTMSP20962 102 aa17.37■□□□□ 0.37
SYNPO-205ENST00000522122 TERF2IPQ9NYB0 399 aa17.37■□□□□ 0.37
SYNPO-205ENST00000522122 NGEFQ8N5V2 710 aa17.35■□□□□ 0.37
SYNPO-205ENST00000522122 CGNL1Q0VF96 1302 aa17.34■□□□□ 0.37
SYNPO-205ENST00000522122 NAP1L2Q9ULW6 460 aaPredicted RBP17.33■□□□□ 0.36
SYNPO-205ENST00000522122 BACH2Q9BYV9 841 aa17.32■□□□□ 0.36
SYNPO-205ENST00000522122 SLC4A3P48751 1232 aa17.32■□□□□ 0.36
SYNPO-205ENST00000522122 GOLGA6L6A8MZA4 724 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 NRDCO43847 1150 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 TRAK1Q9UPV9 953 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 KIAA1211Q6ZU35 1233 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 CDCA7LQ96GN5 454 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
SYNPO-205ENST00000522122 GOLGA6L3A6NEY3 463 aa17.3■□□□□ 0.36
SYNPO-205ENST00000522122 STAC3Q96MF2 364 aa17.3■□□□□ 0.36
SYNPO-205ENST00000522122 PLEKHH2Q8IVE3 1493 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms