RNA–Protein interactions for RNA: ENST00000520846.1

MSR1-211, Transcript of macrophage scavenger receptor 1, human

TSL 4

Gene MSR1, Length 373 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSR1-211	ENST00000520846	SMYD5	Q6GMV2	418 aa		12.25	□□□□□ -0.45
MSR1-211	ENST00000520846	KRTAP3-3	Q9BYR6	98 aa		12.25	□□□□□ -0.45
MSR1-211	ENST00000520846	KRTAP3-2	Q9BYR7	98 aa		12.25	□□□□□ -0.45
MSR1-211	ENST00000520846	MAP3K7	O43318	606 aa		12.24	□□□□□ -0.45
MSR1-211	ENST00000520846	PRIM1	P49642	420 aa	Known RBP	12.24	□□□□□ -0.45
MSR1-211	ENST00000520846	PSEN2	P49810	448 aa		12.23	□□□□□ -0.45
MSR1-211	ENST00000520846	C6orf132	Q5T0Z8	1188 aa		12.23	□□□□□ -0.45
MSR1-211	ENST00000520846	LSM11	P83369	360 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
MSR1-211	ENST00000520846	TSR1	Q2NL82	804 aa	Known RBP	12.19	□□□□□ -0.46
MSR1-211	ENST00000520846	TULP1	O00294	542 aa	Predicted RBP	12.18	□□□□□ -0.46
MSR1-211	ENST00000520846	DMRTA1	Q5VZB9	504 aa		12.18	□□□□□ -0.46
MSR1-211	ENST00000520846	PPP1R3G	B7ZBB8	358 aa		12.17	□□□□□ -0.46
MSR1-211	ENST00000520846	COL9A1	P20849	921 aa		12.17	□□□□□ -0.46
MSR1-211	ENST00000520846	ANKRD13D	Q6ZTN6	518 aa		12.17	□□□□□ -0.46
MSR1-211	ENST00000520846	RBM26	Q5T8P6	1007 aa	Known RBP	12.14	□□□□□ -0.47
MSR1-211	ENST00000520846	NUTM2F	A1L443	756 aa		12.13	□□□□□ -0.47
MSR1-211	ENST00000520846	CDHR5	Q9HBB8	845 aa		12.13	□□□□□ -0.47
MSR1-211	ENST00000520846	TK2	O00142	265 aa		12.12	□□□□□ -0.47
MSR1-211	ENST00000520846	BCAN	Q96GW7	911 aa		12.12	□□□□□ -0.47
MSR1-211	ENST00000520846	ZBED2	Q9BTP6	218 aa		12.12	□□□□□ -0.47
MSR1-211	ENST00000520846	SLC4A5	Q9BY07	1137 aa		12.12	□□□□□ -0.47
MSR1-211	ENST00000520846	CERK	Q8TCT0	537 aa		12.11	□□□□□ -0.47
MSR1-211	ENST00000520846	ADGRD1	Q6QNK2	874 aa		12.1	□□□□□ -0.47
MSR1-211	ENST00000520846	VPS9D1	Q9Y2B5	631 aa		12.1	□□□□□ -0.47
MSR1-211	ENST00000520846	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.09	□□□□□ -0.47
MSR1-211	ENST00000520846	PROX2	Q3B8N5	592 aa		12.07	□□□□□ -0.48
MSR1-211	ENST00000520846	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.07	□□□□□ -0.48
MSR1-211	ENST00000520846	PTGDR	Q13258	359 aa		12.06	□□□□□ -0.48
MSR1-211	ENST00000520846	FCHSD2	O94868	740 aa		12.05	□□□□□ -0.48
MSR1-211	ENST00000520846	PRSS12	P56730	875 aa		12.05	□□□□□ -0.48
MSR1-211	ENST00000520846	CDCA7L	Q96GN5	454 aa		12.05	□□□□□ -0.48
MSR1-211	ENST00000520846	TRIM6-TRIM34	B2RNG4	842 aa		12.04	□□□□□ -0.48
MSR1-211	ENST00000520846	LMOD2	Q6P5Q4	547 aa		12.04	□□□□□ -0.48
MSR1-211	ENST00000520846	GPIHBP1	Q8IV16	184 aa		12.04	□□□□□ -0.48
MSR1-211	ENST00000520846	ONECUT3	O60422	494 aa	Predicted RBP	12.03	□□□□□ -0.48
MSR1-211	ENST00000520846	SPNS2	Q8IVW8	549 aa		12.03	□□□□□ -0.48
MSR1-211	ENST00000520846	HR	O43593	1189 aa		12.02	□□□□□ -0.49
MSR1-211	ENST00000520846	RBM27	Q9P2N5	1060 aa	Known RBP	12.02	□□□□□ -0.49
MSR1-211	ENST00000520846	RABGEF1	Q9UJ41	708 aa		12.02	□□□□□ -0.49
MSR1-211	ENST00000520846	KIAA1468	Q9P260	1216 aa		12.01	□□□□□ -0.49
MSR1-211	ENST00000520846	TSKS	Q9UJT2	592 aa		12.01	□□□□□ -0.49
MSR1-211	ENST00000520846	PACS2	Q86VP3	889 aa		12	□□□□□ -0.49
MSR1-211	ENST00000520846	STAC3	Q96MF2	364 aa		12	□□□□□ -0.49
MSR1-211	ENST00000520846	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.99	□□□□□ -0.49
MSR1-211	ENST00000520846	GPR37	O15354	613 aa		11.99	□□□□□ -0.49
MSR1-211	ENST00000520846	HIC1	Q14526	733 aa		11.99	□□□□□ -0.49
MSR1-211	ENST00000520846	PADI6	Q6TGC4	694 aa		11.99	□□□□□ -0.49
MSR1-211	ENST00000520846	NBPF3	Q9H094	633 aa		11.98	□□□□□ -0.49
MSR1-211	ENST00000520846	FAM198A	Q9UFP1	575 aa		11.98	□□□□□ -0.49
MSR1-211	ENST00000520846	TTC13	Q8NBP0	860 aa		11.97	□□□□□ -0.49
MSR1-211	ENST00000520846	MRPL50	Q8N5N7	158 aa	Known RBP	11.96	□□□□□ -0.49
MSR1-211	ENST00000520846	GNPAT	O15228	680 aa		11.95	□□□□□ -0.5
MSR1-211	ENST00000520846	MYT1L	Q9UL68	1186 aa		11.95	□□□□□ -0.5
MSR1-211	ENST00000520846	NBPF26	B4DH59	902 aa		11.93	□□□□□ -0.5
MSR1-211	ENST00000520846	TATDN2	Q93075	761 aa		11.92	□□□□□ -0.5
MSR1-211	ENST00000520846	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.92	□□□□□ -0.5
MSR1-211	ENST00000520846	C3orf80	F5H4A9	247 aa		11.91	□□□□□ -0.5
MSR1-211	ENST00000520846	FECH	P22830	423 aa		11.91	□□□□□ -0.5
MSR1-211	ENST00000520846	MMRN1	Q13201	1228 aa		11.91	□□□□□ -0.5
MSR1-211	ENST00000520846	LAPTM4B	Q86VI4	370 aa		11.91	□□□□□ -0.5
MSR1-211	ENST00000520846	PNMA3	Q9UL41	463 aa		11.91	□□□□□ -0.5
MSR1-211	ENST00000520846	NUDT18	Q6ZVK8	323 aa		11.9	□□□□□ -0.5
MSR1-211	ENST00000520846	GOLGA8CP	A6NN73	597 aa		11.89	□□□□□ -0.51
MSR1-211	ENST00000520846	SMAP	O00193	183 aa		11.89	□□□□□ -0.51
MSR1-211	ENST00000520846	FAM98C	Q17RN3	349 aa	Known RBP	11.89	□□□□□ -0.51
MSR1-211	ENST00000520846	ZC3H15	Q8WU90	426 aa	Known RBP	11.89	□□□□□ -0.51
MSR1-211	ENST00000520846	ADGRG1	Q9Y653	693 aa		11.88	□□□□□ -0.51
MSR1-211	ENST00000520846	PLSCR2	Q9NRY7	297 aa		11.87	□□□□□ -0.51
MSR1-211	ENST00000520846	FAM161A	Q3B820	660 aa		11.86	□□□□□ -0.51
MSR1-211	ENST00000520846	RNF166	Q96A37	237 aa	Predicted RBP	11.86	□□□□□ -0.51
MSR1-211	ENST00000520846	RBM46	Q8TBY0	533 aa	Known RBP	11.85	□□□□□ -0.51
MSR1-211	ENST00000520846	ZFR	Q96KR1	1074 aa	Known RBP	11.85	□□□□□ -0.51
MSR1-211	ENST00000520846	EYA1	Q99502	592 aa		11.85	□□□□□ -0.51
MSR1-211	ENST00000520846	OAT	P04181	439 aa		11.84	□□□□□ -0.51
MSR1-211	ENST00000520846	ZMYND10	O75800	440 aa		11.83	□□□□□ -0.52
MSR1-211	ENST00000520846	MAP2K5	Q13163	448 aa		11.83	□□□□□ -0.52
MSR1-211	ENST00000520846	WNT2B	Q93097	391 aa		11.83	□□□□□ -0.52
MSR1-211	ENST00000520846	KCTD12	Q96CX2	325 aa	Known RBP	11.83	□□□□□ -0.52
MSR1-211	ENST00000520846	ANKK1	Q8NFD2	765 aa		11.82	□□□□□ -0.52
MSR1-211	ENST00000520846	BARGIN	Q6ZT62	677 aa		11.81	□□□□□ -0.52
MSR1-211	ENST00000520846	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.81	□□□□□ -0.52
MSR1-211	ENST00000520846	IRF6	O14896	467 aa		11.8	□□□□□ -0.52
MSR1-211	ENST00000520846	METTL3	Q86U44	580 aa	Known RBP	11.8	□□□□□ -0.52
MSR1-211	ENST00000520846	KRI1	Q8N9T8	703 aa	Known RBP	11.8	□□□□□ -0.52
MSR1-211	ENST00000520846	PXYLP1	Q8TE99	480 aa		11.8	□□□□□ -0.52
MSR1-211	ENST00000520846	HDGF	P51858	240 aa	Known RBP	11.79	□□□□□ -0.52
MSR1-211	ENST00000520846	RCCD1	A6NED2	376 aa		11.77	□□□□□ -0.53
MSR1-211	ENST00000520846	DNAJB2	P25686	324 aa		11.77	□□□□□ -0.53
MSR1-211	ENST00000520846	THSD4	Q6ZMP0	1018 aa		11.77	□□□□□ -0.53
MSR1-211	ENST00000520846	SAMD7	Q7Z3H4	446 aa		11.77	□□□□□ -0.53
MSR1-211	ENST00000520846	LRCH3	Q96II8	777 aa		11.77	□□□□□ -0.53
MSR1-211	ENST00000520846	SOWAHB	A6NEL2	793 aa		11.76	□□□□□ -0.53
MSR1-211	ENST00000520846	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.76	□□□□□ -0.53
MSR1-211	ENST00000520846	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.75	□□□□□ -0.53
MSR1-211	ENST00000520846	BCAM	P50895	628 aa		11.75	□□□□□ -0.53
MSR1-211	ENST00000520846	CCDC102A	Q96A19	550 aa		11.75	□□□□□ -0.53
MSR1-211	ENST00000520846	TMEM134	Q9H6X4	195 aa		11.74	□□□□□ -0.53
MSR1-211	ENST00000520846	SWT1	Q5T5J6	900 aa	Known RBP	11.73	□□□□□ -0.53
MSR1-211	ENST00000520846	PHOX2B	Q99453	314 aa		11.73	□□□□□ -0.53
MSR1-211	ENST00000520846	PTPN5	P54829	565 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 11 ms