RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 COG6Q9Y2V7 657 aa12.93□□□□□ -0.34
PDGFRB-207ENST00000520579 CDK11BP21127 795 aaKnown RBP12.93□□□□□ -0.34
PDGFRB-207ENST00000520579 IPO4Q8TEX9 1081 aaKnown RBP12.93□□□□□ -0.34
PDGFRB-207ENST00000520579 MAP3K1Q13233 1512 aa12.93□□□□□ -0.34
PDGFRB-207ENST00000520579 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.92□□□□□ -0.34
PDGFRB-207ENST00000520579 NCOA2Q15596 1464 aa12.92□□□□□ -0.34
PDGFRB-207ENST00000520579 CENPQQ7L2Z9 268 aaPredicted RBP12.92□□□□□ -0.34
PDGFRB-207ENST00000520579 NLRP13Q86W25 1043 aa12.92□□□□□ -0.34
PDGFRB-207ENST00000520579 ADAMTS8Q9UP79 889 aa12.92□□□□□ -0.34
PDGFRB-207ENST00000520579 PANK1Q8TE04 598 aa12.91□□□□□ -0.34
PDGFRB-207ENST00000520579 KTN1Q86UP2 1357 aaKnown RBP12.91□□□□□ -0.34
PDGFRB-207ENST00000520579 MFAP1P55081 439 aaKnown RBP12.9□□□□□ -0.34
PDGFRB-207ENST00000520579 UPF2Q9HAU5 1272 aaKnown RBP12.9□□□□□ -0.34
PDGFRB-207ENST00000520579 TPRNQ4KMQ1 711 aa12.9□□□□□ -0.34
PDGFRB-207ENST00000520579 TNNT2P45379 298 aaPredicted RBP12.9□□□□□ -0.34
PDGFRB-207ENST00000520579 STAC3Q96MF2 364 aa12.9□□□□□ -0.34
PDGFRB-207ENST00000520579 RSPH4AQ5TD94 716 aa12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 NCLP19338 710 aaKnown RBP12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 CALD1Q05682 793 aaKnown RBP12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 IGHDP01880 384 aa12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 PTPN23Q9H3S7 1636 aa12.89□□□□□ -0.35
PDGFRB-207ENST00000520579 C14orf37Q86TY3 774 aa12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 MYH16Q9H6N6 1097 aa12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 PANK3Q9H999 370 aa12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 KIF15Q9NS87 1388 aa12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 FAM13BQ9NYF5 915 aa12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 SENP3Q9H4L4 574 aaPredicted RBP12.88□□□□□ -0.35
PDGFRB-207ENST00000520579 FANCD2Q9BXW9 1451 aa12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 RALBP1Q15311 655 aa12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 ANP32BQ92688 251 aaKnown RBP12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 PRDM10Q9NQV6 1147 aa12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 RRP7AQ9Y3A4 280 aaKnown RBP12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 PRDM4Q9UKN5 801 aa12.87□□□□□ -0.35
PDGFRB-207ENST00000520579 TDRD9Q8NDG6 1382 aaKnown RBP12.86□□□□□ -0.35
PDGFRB-207ENST00000520579 NBPF1Q3BBV0 1214 aa12.86□□□□□ -0.35
PDGFRB-207ENST00000520579 KDM5BQ9UGL1 1544 aa12.86□□□□□ -0.35
PDGFRB-207ENST00000520579 MYOM3Q5VTT5 1437 aa12.85□□□□□ -0.35
PDGFRB-207ENST00000520579 TRAK2O60296 914 aa12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 PDCL3Q9H2J4 239 aa12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 ERCC6Q03468 1493 aa12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 E9PSI1 815 aa12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 APAF1O14727 1248 aa12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 SAMD1Q6SPF0 538 aaPredicted RBP12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 SECISBP2LQ93073 1101 aaKnown RBP12.84□□□□□ -0.35
PDGFRB-207ENST00000520579 PDE3BQ13370 1112 aa12.83□□□□□ -0.36
PDGFRB-207ENST00000520579 FTSJ3Q8IY81 847 aaKnown RBP12.83□□□□□ -0.36
PDGFRB-207ENST00000520579 TNNQ9UQP3 1299 aa12.83□□□□□ -0.36
PDGFRB-207ENST00000520579 GOLGA2Q08379 1002 aa12.83□□□□□ -0.36
PDGFRB-207ENST00000520579 HOMEZQ8IX15 550 aa12.83□□□□□ -0.36
PDGFRB-207ENST00000520579 MPNDQ8N594 471 aa12.82□□□□□ -0.36
PDGFRB-207ENST00000520579 TBC1D2Q9BYX2 928 aa12.82□□□□□ -0.36
PDGFRB-207ENST00000520579 PRDM2Q13029 1718 aa12.82□□□□□ -0.36
PDGFRB-207ENST00000520579 ANKRD30BQ9BXX2 1392 aa12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 ESPNB1AK53 854 aa12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 RAD54L2Q9Y4B4 1467 aa12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 SPINK5Q9NQ38 1064 aaPredicted RBP12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 KDM6BO15054 1643 aa12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 ROCK2O75116 1388 aaKnown RBP12.81□□□□□ -0.36
PDGFRB-207ENST00000520579 PDS5BQ9NTI5 1447 aa12.8□□□□□ -0.36
PDGFRB-207ENST00000520579 BRD4O60885 1362 aaPredicted RBP12.8□□□□□ -0.36
PDGFRB-207ENST00000520579 MCM4P33991 863 aa12.8□□□□□ -0.36
PDGFRB-207ENST00000520579 ERBB4Q15303 1308 aa12.8□□□□□ -0.36
PDGFRB-207ENST00000520579 KIAA1211Q6ZU35 1233 aa12.79□□□□□ -0.36
PDGFRB-207ENST00000520579 KDM2BQ8NHM5 1336 aa12.79□□□□□ -0.36
PDGFRB-207ENST00000520579 DNTTIP2Q5QJE6 756 aaKnown RBP12.79□□□□□ -0.36
PDGFRB-207ENST00000520579 CASKIN1Q8WXD9 1431 aa12.79□□□□□ -0.36
PDGFRB-207ENST00000520579 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
PDGFRB-207ENST00000520579 R3HCC1Q9Y3T6 440 aaKnown RBP12.78□□□□□ -0.36
PDGFRB-207ENST00000520579 DENND4BO75064 1496 aaPredicted RBP12.78□□□□□ -0.36
PDGFRB-207ENST00000520579 GRPEL1Q9HAV7 217 aa12.78□□□□□ -0.36
PDGFRB-207ENST00000520579 KNSTRNQ9Y448 316 aa12.78□□□□□ -0.36
PDGFRB-207ENST00000520579 ZNF830Q96NB3 372 aaPredicted RBP12.77□□□□□ -0.37
PDGFRB-207ENST00000520579 DUSP27Q5VZP5 1158 aa12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 FGD5Q6ZNL6 1462 aa12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 CLCN1P35523 988 aa12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 DMRT2Q9Y5R5 561 aa12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 FOXD4L5Q5VV16 416 aaPredicted RBP12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 FOXD4L4Q8WXT5 416 aaPredicted RBP12.76□□□□□ -0.37
PDGFRB-207ENST00000520579 SPATA31E1Q6ZUB1 1445 aa12.75□□□□□ -0.37
PDGFRB-207ENST00000520579 NUP155O75694 1391 aa12.75□□□□□ -0.37
PDGFRB-207ENST00000520579 HSP90AB1P08238 724 aaKnown RBP12.75□□□□□ -0.37
PDGFRB-207ENST00000520579 USP19O94966 1318 aa12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 PDZRN3Q9UPQ7 1066 aa12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 PLEKHH1Q9ULM0 1364 aa12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 AEBP1Q8IUX7 1158 aa12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 CNPY4Q8N129 248 aa12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 LRPPRCP42704 1394 aaKnown RBP12.74□□□□□ -0.37
PDGFRB-207ENST00000520579 HSCBQ8IWL3 235 aa12.73□□□□□ -0.37
PDGFRB-207ENST00000520579 WWC1Q8IX03 1113 aa12.73□□□□□ -0.37
PDGFRB-207ENST00000520579 FYCO1Q9BQS8 1478 aa12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 APPP05067 770 aa12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 MSNP26038 577 aaKnown RBP12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 PATL2C9JE40 543 aaKnown RBP12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 MRE11P49959 708 aa12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 GAS2L3Q86XJ1 694 aa12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 RPRD2Q5VT52 1461 aaKnown RBP12.72□□□□□ -0.37
PDGFRB-207ENST00000520579 C22orf23Q9BZE7 217 aa12.7□□□□□ -0.38
PDGFRB-207ENST00000520579 XPCQ01831 940 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms