RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 PDZRN3Q9UPQ7 1066 aa8.53□□□□□ -1.04
HMGB1P41-201ENST00000520234 ANO8Q9HCE9 1232 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P41-201ENST00000520234 CHGAP10645 457 aaKnown RBP8.5□□□□□ -1.05
HMGB1P41-201ENST00000520234 PROX2Q3B8N5 592 aa8.5□□□□□ -1.05
HMGB1P41-201ENST00000520234 HS6ST3Q8IZP7 471 aa8.5□□□□□ -1.05
HMGB1P41-201ENST00000520234 BBXQ8WY36 941 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P41-201ENST00000520234 TSR3Q9UJK0 312 aaKnown RBP8.5□□□□□ -1.05
HMGB1P41-201ENST00000520234 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P41-201ENST00000520234 ONECUT3O60422 494 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P41-201ENST00000520234 TREML4Q6UXN2 200 aa8.45□□□□□ -1.06
HMGB1P41-201ENST00000520234 DNAJC5Q9H3Z4 198 aa8.45□□□□□ -1.06
HMGB1P41-201ENST00000520234 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P41-201ENST00000520234 HPS5Q9UPZ3 1129 aa8.45□□□□□ -1.06
HMGB1P41-201ENST00000520234 EVI5O60447 810 aa8.44□□□□□ -1.06
HMGB1P41-201ENST00000520234 PPP1R18Q6NYC8 613 aa8.44□□□□□ -1.06
HMGB1P41-201ENST00000520234 LRCH3Q96II8 777 aa8.44□□□□□ -1.06
HMGB1P41-201ENST00000520234 KIAA1468Q9P260 1216 aa8.44□□□□□ -1.06
HMGB1P41-201ENST00000520234 LOC100996750A0A140TA64 210 aa8.43□□□□□ -1.06
HMGB1P41-201ENST00000520234 COL9A1P20849 921 aa8.43□□□□□ -1.06
HMGB1P41-201ENST00000520234 LCE2AQ5TA79 106 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P41-201ENST00000520234 KRTAP4-6Q9BYQ5 205 aa8.43□□□□□ -1.06
HMGB1P41-201ENST00000520234 PLCB2Q00722 1185 aa8.42□□□□□ -1.06
HMGB1P41-201ENST00000520234 FAM98CQ17RN3 349 aaKnown RBP8.42□□□□□ -1.06
HMGB1P41-201ENST00000520234 TJAP1Q5JTD0 557 aa8.42□□□□□ -1.06
HMGB1P41-201ENST00000520234 SLC24A1O60721 1099 aa8.41□□□□□ -1.06
HMGB1P41-201ENST00000520234 STK17AQ9UEE5 414 aa8.41□□□□□ -1.06
HMGB1P41-201ENST00000520234 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.39□□□□□ -1.07
HMGB1P41-201ENST00000520234 SEPT9Q9UHD8 586 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P41-201ENST00000520234 PPP1R15BQ5SWA1 713 aa8.38□□□□□ -1.07
HMGB1P41-201ENST00000520234 SPRYD3Q8NCJ5 442 aa8.37□□□□□ -1.07
HMGB1P41-201ENST00000520234 FBXW7Q969H0 707 aa8.37□□□□□ -1.07
HMGB1P41-201ENST00000520234 IL21Q9HBE4 155 aa8.37□□□□□ -1.07
HMGB1P41-201ENST00000520234 MYT1Q01538 1121 aa8.36□□□□□ -1.07
HMGB1P41-201ENST00000520234 PKDCCQ504Y2 493 aa8.36□□□□□ -1.07
HMGB1P41-201ENST00000520234 PCDHGA10Q9Y5H3 936 aa8.36□□□□□ -1.07
HMGB1P41-201ENST00000520234 POTECB2RU33 542 aa8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 DGAT1O75907 488 aa8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 PPP4CP60510 307 aa8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 PAXIP1Q6ZW49 1069 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 MTRQ99707 1265 aa8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 CRISPLD2Q9H0B8 497 aa8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 RYDENQ9NUL5 291 aaKnown RBP8.35□□□□□ -1.07
HMGB1P41-201ENST00000520234 TRIM6-TRIM34B2RNG4 842 aa8.33□□□□□ -1.08
HMGB1P41-201ENST00000520234 NKX1-1Q15270 411 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P41-201ENST00000520234 TYW1BQ6NUM6 668 aa8.32□□□□□ -1.08
HMGB1P41-201ENST00000520234 CFAP44Q96MT7 982 aa8.32□□□□□ -1.08
HMGB1P41-201ENST00000520234 GGCXP38435 758 aa8.31□□□□□ -1.08
HMGB1P41-201ENST00000520234 TRIM67Q6ZTA4 783 aa8.3□□□□□ -1.08
HMGB1P41-201ENST00000520234 PHF14O94880 888 aa8.29□□□□□ -1.08
HMGB1P41-201ENST00000520234 MAP3K9P80192 1104 aa8.29□□□□□ -1.08
HMGB1P41-201ENST00000520234 GTPBP6O43824 516 aaPredicted RBP8.28□□□□□ -1.08
HMGB1P41-201ENST00000520234 INSM1Q01101 510 aaPredicted RBP8.28□□□□□ -1.08
HMGB1P41-201ENST00000520234 HAP1P54257 671 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P41-201ENST00000520234 TMUB1Q9BVT8 246 aa8.27□□□□□ -1.09
HMGB1P41-201ENST00000520234 WFS1O76024 890 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 PRR20EP86478 221 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 PRR20CP86479 221 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 PRR20DP86480 221 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 PRR20BP86481 221 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 PRR20AP86496 221 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 ZNF516Q92618 1163 aa8.26□□□□□ -1.09
HMGB1P41-201ENST00000520234 WIPF1O43516 503 aa8.25□□□□□ -1.09
HMGB1P41-201ENST00000520234 C6orf132Q5T0Z8 1188 aa8.25□□□□□ -1.09
HMGB1P41-201ENST00000520234 PDE4AP27815 886 aa8.23□□□□□ -1.09
HMGB1P41-201ENST00000520234 PACS2Q86VP3 889 aa8.22□□□□□ -1.09
HMGB1P41-201ENST00000520234 VSIG10Q8N0Z9 540 aa8.21□□□□□ -1.1
HMGB1P41-201ENST00000520234 NKX2-3Q8TAU0 364 aa8.21□□□□□ -1.1
HMGB1P41-201ENST00000520234 EPAS1Q99814 870 aa8.21□□□□□ -1.1
HMGB1P41-201ENST00000520234 FAM187AA6NFU0 413 aa8.2□□□□□ -1.1
HMGB1P41-201ENST00000520234 SLC19A1P41440 591 aa8.2□□□□□ -1.1
HMGB1P41-201ENST00000520234 SAMD7Q7Z3H4 446 aa8.2□□□□□ -1.1
HMGB1P41-201ENST00000520234 NCKAP5LQ9HCH0 1330 aa8.2□□□□□ -1.1
HMGB1P41-201ENST00000520234 ZNF598Q86UK7 904 aaKnown RBP8.18□□□□□ -1.1
HMGB1P41-201ENST00000520234 TSHZ2Q9NRE2 1034 aa8.18□□□□□ -1.1
HMGB1P41-201ENST00000520234 AAASQ9NRG9 546 aa8.18□□□□□ -1.1
HMGB1P41-201ENST00000520234 ST8SIA5O15466 376 aa8.16□□□□□ -1.1
HMGB1P41-201ENST00000520234 NFX1Q12986 1120 aaKnown RBP8.16□□□□□ -1.1
HMGB1P41-201ENST00000520234 SPRYD7Q5W111 196 aa8.16□□□□□ -1.1
HMGB1P41-201ENST00000520234 DDX27Q96GQ7 796 aaKnown RBP8.16□□□□□ -1.1
HMGB1P41-201ENST00000520234 TSKSQ9UJT2 592 aa8.16□□□□□ -1.1
HMGB1P41-201ENST00000520234 APLP1P51693 650 aa8.15□□□□□ -1.1
HMGB1P41-201ENST00000520234 EMID1Q96A84 441 aaPredicted RBP8.14□□□□□ -1.11
HMGB1P41-201ENST00000520234 EMILIN3Q9NT22 766 aa8.14□□□□□ -1.11
HMGB1P41-201ENST00000520234 NECTIN2Q92692 538 aa8.13□□□□□ -1.11
HMGB1P41-201ENST00000520234 CRIPAKQ8N1N5 446 aa8.12□□□□□ -1.11
HMGB1P41-201ENST00000520234 RNF223E7ERA6 249 aa8.11□□□□□ -1.11
HMGB1P41-201ENST00000520234 GDF9O60383 454 aa8.11□□□□□ -1.11
HMGB1P41-201ENST00000520234 ZNF697Q5TEC3 545 aa8.11□□□□□ -1.11
HMGB1P41-201ENST00000520234 LARP6Q9BRS8 491 aaKnown RBP8.11□□□□□ -1.11
HMGB1P41-201ENST00000520234 FAM181BA6NEQ2 426 aa8.1□□□□□ -1.11
HMGB1P41-201ENST00000520234 ZPR1O75312 459 aa8.1□□□□□ -1.11
HMGB1P41-201ENST00000520234 COPS2P61201 443 aa8.1□□□□□ -1.11
HMGB1P41-201ENST00000520234 MFSD10Q14728 455 aa8.1□□□□□ -1.11
HMGB1P41-201ENST00000520234 TNFRSF10AO00220 468 aa8.09□□□□□ -1.11
HMGB1P41-201ENST00000520234 RBM33Q96EV2 1170 aaKnown RBP8.09□□□□□ -1.11
HMGB1P41-201ENST00000520234 KDM2AQ9Y2K7 1162 aa8.09□□□□□ -1.11
HMGB1P41-201ENST00000520234 C11orf95C9JLR9 678 aaPredicted RBP8.08□□□□□ -1.12
HMGB1P41-201ENST00000520234 RNF40O75150 1001 aa8.08□□□□□ -1.12
HMGB1P41-201ENST00000520234 HDGFP51858 240 aaKnown RBP8.08□□□□□ -1.12
HMGB1P41-201ENST00000520234 SUZ12Q15022 739 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms