RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 HIC1Q14526 733 aa14.6□□□□□ -0.07
SDCBP-208ENST00000520228 BCL2L12Q9HB09 334 aa14.6□□□□□ -0.07
SDCBP-208ENST00000520228 GNPATO15228 680 aa14.59□□□□□ -0.07
SDCBP-208ENST00000520228 LCE2DQ5TA82 110 aaPredicted RBP14.59□□□□□ -0.07
SDCBP-208ENST00000520228 SLC24A3Q9HC58 644 aa14.59□□□□□ -0.07
SDCBP-208ENST00000520228 FAM163AQ96GL9 167 aaPredicted RBP14.57□□□□□ -0.08
SDCBP-208ENST00000520228 FECHP22830 423 aa14.56□□□□□ -0.08
SDCBP-208ENST00000520228 MARVELD3Q96A59 401 aa14.55□□□□□ -0.08
SDCBP-208ENST00000520228 ERBB3P21860 1342 aa14.53□□□□□ -0.08
SDCBP-208ENST00000520228 EMP3P54852 163 aa14.53□□□□□ -0.08
SDCBP-208ENST00000520228 CERKQ8TCT0 537 aa14.53□□□□□ -0.08
SDCBP-208ENST00000520228 MINK1Q8N4C8 1332 aaPredicted RBP14.52□□□□□ -0.08
SDCBP-208ENST00000520228 MAP2K5Q13163 448 aa14.52□□□□□ -0.09
SDCBP-208ENST00000520228 VARS2Q5ST30 1063 aaKnown RBP14.52□□□□□ -0.09
SDCBP-208ENST00000520228 KRI1Q8N9T8 703 aaKnown RBP14.51□□□□□ -0.09
SDCBP-208ENST00000520228 COL9A1P20849 921 aa14.5□□□□□ -0.09
SDCBP-208ENST00000520228 AK7Q96M32 723 aa14.5□□□□□ -0.09
SDCBP-208ENST00000520228 IRF6O14896 467 aa14.49□□□□□ -0.09
SDCBP-208ENST00000520228 PTPREP23469 700 aa14.49□□□□□ -0.09
SDCBP-208ENST00000520228 TTC13Q8NBP0 860 aa14.48□□□□□ -0.09
SDCBP-208ENST00000520228 RBM27Q9P2N5 1060 aaKnown RBP14.48□□□□□ -0.09
SDCBP-208ENST00000520228 PPP1R3GB7ZBB8 358 aa14.47□□□□□ -0.09
SDCBP-208ENST00000520228 POTEB3A0JP26 581 aa14.46□□□□□ -0.09
SDCBP-208ENST00000520228 POTEBQ6S5H4 581 aa14.46□□□□□ -0.09
SDCBP-208ENST00000520228 POTEEQ6S8J3 1075 aa14.46□□□□□ -0.09
SDCBP-208ENST00000520228 FAM205CA6NFA0 338 aa14.45□□□□□ -0.1
SDCBP-208ENST00000520228 PRSS12P56730 875 aa14.44□□□□□ -0.1
SDCBP-208ENST00000520228 CCDC102AQ96A19 550 aa14.44□□□□□ -0.1
SDCBP-208ENST00000520228 TRIM66O15016 1216 aa14.43□□□□□ -0.1
SDCBP-208ENST00000520228 PADI6Q6TGC4 694 aa14.43□□□□□ -0.1
SDCBP-208ENST00000520228 ZNF687Q8N1G0 1237 aa14.43□□□□□ -0.1
SDCBP-208ENST00000520228 CDCA7LQ96GN5 454 aa14.43□□□□□ -0.1
SDCBP-208ENST00000520228 HS3ST6Q96QI5 342 aa14.42□□□□□ -0.1
SDCBP-208ENST00000520228 KCNK17Q96T54 332 aa14.42□□□□□ -0.1
SDCBP-208ENST00000520228 ARHGAP33O14559 1287 aa14.4□□□□□ -0.1
SDCBP-208ENST00000520228 FAM198AQ9UFP1 575 aa14.4□□□□□ -0.1
SDCBP-208ENST00000520228 PSEN2P49810 448 aa14.39□□□□□ -0.11
SDCBP-208ENST00000520228 PBX2P40425 430 aa14.38□□□□□ -0.11
SDCBP-208ENST00000520228 BRPF1P55201 1214 aaPredicted RBP14.38□□□□□ -0.11
SDCBP-208ENST00000520228 TSKSQ9UJT2 592 aa14.37□□□□□ -0.11
SDCBP-208ENST00000520228 ZBED2Q9BTP6 218 aa14.36□□□□□ -0.11
SDCBP-208ENST00000520228 ADGRG1Q9Y653 693 aa14.36□□□□□ -0.11
SDCBP-208ENST00000520228 AXIN2Q9Y2T1 843 aa14.35□□□□□ -0.11
SDCBP-208ENST00000520228 TRIM6-TRIM34B2RNG4 842 aa14.34□□□□□ -0.11
SDCBP-208ENST00000520228 ONECUT3O60422 494 aaPredicted RBP14.34□□□□□ -0.11
SDCBP-208ENST00000520228 PDE4DQ08499 809 aa14.34□□□□□ -0.11
SDCBP-208ENST00000520228 KCNH8Q96L42 1107 aa14.34□□□□□ -0.11
SDCBP-208ENST00000520228 AMHR2Q16671 573 aa14.33□□□□□ -0.12
SDCBP-208ENST00000520228 FAM161AQ3B820 660 aa14.33□□□□□ -0.12
SDCBP-208ENST00000520228 PROX2Q3B8N5 592 aa14.33□□□□□ -0.12
SDCBP-208ENST00000520228 DMRTA1Q5VZB9 504 aa14.33□□□□□ -0.12
SDCBP-208ENST00000520228 SLC4A5Q9BY07 1137 aa14.33□□□□□ -0.12
SDCBP-208ENST00000520228 OATP04181 439 aa14.31□□□□□ -0.12
SDCBP-208ENST00000520228 PHOX2BQ99453 314 aa14.31□□□□□ -0.12
SDCBP-208ENST00000520228 C3orf80F5H4A9 247 aa14.3□□□□□ -0.12
SDCBP-208ENST00000520228 METTL3Q86U44 580 aaKnown RBP14.3□□□□□ -0.12
SDCBP-208ENST00000520228 PXYLP1Q8TE99 480 aa14.3□□□□□ -0.12
SDCBP-208ENST00000520228 NEUROD2Q15784 382 aa14.29□□□□□ -0.12
SDCBP-208ENST00000520228 EYA1Q99502 592 aa14.28□□□□□ -0.12
SDCBP-208ENST00000520228 PACS2Q86VP3 889 aa14.26□□□□□ -0.13
SDCBP-208ENST00000520228 TMUB1Q9BVT8 246 aa14.25□□□□□ -0.13
SDCBP-208ENST00000520228 VPS9D1Q9Y2B5 631 aa14.25□□□□□ -0.13
SDCBP-208ENST00000520228 NUDT18Q6ZVK8 323 aa14.24□□□□□ -0.13
SDCBP-208ENST00000520228 PARP9Q8IXQ6 854 aa14.24□□□□□ -0.13
SDCBP-208ENST00000520228 RBM46Q8TBY0 533 aaKnown RBP14.24□□□□□ -0.13
SDCBP-208ENST00000520228 TATDN2Q93075 761 aa14.24□□□□□ -0.13
SDCBP-208ENST00000520228 GPBP1L1Q9HC44 474 aaPredicted RBP14.24□□□□□ -0.13
SDCBP-208ENST00000520228 KIAA1468Q9P260 1216 aa14.24□□□□□ -0.13
SDCBP-208ENST00000520228 NBPF26B4DH59 902 aa14.23□□□□□ -0.13
SDCBP-208ENST00000520228 RABGEF1Q9UJ41 708 aa14.23□□□□□ -0.13
SDCBP-208ENST00000520228 TK2O00142 265 aa14.22□□□□□ -0.13
SDCBP-208ENST00000520228 REPIN1Q9BWE0 567 aaKnown RBP14.22□□□□□ -0.13
SDCBP-208ENST00000520228 LSM11P83369 360 aaKnown RBP eCLIP14.21□□□□□ -0.13
SDCBP-208ENST00000520228 KDM4CQ9H3R0 1056 aa14.21□□□□□ -0.13
SDCBP-208ENST00000520228 PNMA3Q9UL41 463 aa14.21□□□□□ -0.13
SDCBP-208ENST00000520228 BHMG1C9JSJ3 638 aaPredicted RBP14.19□□□□□ -0.14
SDCBP-208ENST00000520228 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.18□□□□□ -0.14
SDCBP-208ENST00000520228 SMAPO00193 183 aa14.18□□□□□ -0.14
SDCBP-208ENST00000520228 NLRP7Q8WX94 980 aa14.18□□□□□ -0.14
SDCBP-208ENST00000520228 RCCD1A6NED2 376 aa14.17□□□□□ -0.14
SDCBP-208ENST00000520228 CLCN1P35523 988 aa14.17□□□□□ -0.14
SDCBP-208ENST00000520228 MDM2Q00987 491 aaPredicted RBP14.17□□□□□ -0.14
SDCBP-208ENST00000520228 TTLL12Q14166 644 aaPredicted RBP14.16□□□□□ -0.14
SDCBP-208ENST00000520228 GIGYF2Q6Y7W6 1299 aaKnown RBP14.16□□□□□ -0.14
SDCBP-208ENST00000520228 GPCPD1Q9NPB8 672 aa14.16□□□□□ -0.14
SDCBP-208ENST00000520228 KRTAP3-3Q9BYR6 98 aa14.15□□□□□ -0.14
SDCBP-208ENST00000520228 KRTAP3-2Q9BYR7 98 aa14.15□□□□□ -0.14
SDCBP-208ENST00000520228 DNAJB2P25686 324 aa14.14□□□□□ -0.15
SDCBP-208ENST00000520228 ADGRD1Q6QNK2 874 aa14.14□□□□□ -0.15
SDCBP-208ENST00000520228 CCDC180Q9P1Z9 1646 aa14.14□□□□□ -0.15
SDCBP-208ENST00000520228 HRO43593 1189 aa14.13□□□□□ -0.15
SDCBP-208ENST00000520228 POTEGQ6S5H5 508 aa14.13□□□□□ -0.15
SDCBP-208ENST00000520228 TMEM134Q9H6X4 195 aa14.12□□□□□ -0.15
SDCBP-208ENST00000520228 SEPT9Q9UHD8 586 aaPredicted RBP14.12□□□□□ -0.15
SDCBP-208ENST00000520228 MS4A1P11836 297 aa14.11□□□□□ -0.15
SDCBP-208ENST00000520228 FAM217BQ9NTX9 383 aaPredicted RBP14.11□□□□□ -0.15
SDCBP-208ENST00000520228 POTEMA6NI47 508 aa14.1□□□□□ -0.15
SDCBP-208ENST00000520228 TMEM132AQ24JP5 1023 aa14.1□□□□□ -0.15
SDCBP-208ENST00000520228 DAXXQ9UER7 740 aaPredicted RBP14.1□□□□□ -0.15
SDCBP-208ENST00000520228 FAM98CQ17RN3 349 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms