RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ROBO1Q9Y6N7 1651 aa4.91□□□□□ -1.62
MCF2-208ENST00000519895 KIF27Q86VH2 1401 aa4.91□□□□□ -1.62
MCF2-208ENST00000519895 COL13A1Q5TAT6 717 aaPredicted RBP4.9□□□□□ -1.62
MCF2-208ENST00000519895 LRP6O75581 1613 aa4.9□□□□□ -1.62
MCF2-208ENST00000519895 SP7Q8TDD2 431 aaPredicted RBP4.9□□□□□ -1.63
MCF2-208ENST00000519895 CARMIL2Q6F5E8 1435 aa4.9□□□□□ -1.63
MCF2-208ENST00000519895 DENND4BO75064 1496 aaPredicted RBP4.9□□□□□ -1.63
MCF2-208ENST00000519895 RGS19P49795 217 aa4.89□□□□□ -1.63
MCF2-208ENST00000519895 JMYQ8N9B5 988 aa4.89□□□□□ -1.63
MCF2-208ENST00000519895 ATP10AO60312 1499 aa4.89□□□□□ -1.63
MCF2-208ENST00000519895 ATP10BO94823 1461 aa4.88□□□□□ -1.63
MCF2-208ENST00000519895 NGLY1Q96IV0 654 aa4.88□□□□□ -1.63
MCF2-208ENST00000519895 RNF216Q9NWF9 866 aaPredicted RBP4.88□□□□□ -1.63
MCF2-208ENST00000519895 STRCP1A6NGW2 1772 aa4.88□□□□□ -1.63
MCF2-208ENST00000519895 SHANK3Q9BYB0 1731 aa4.87□□□□□ -1.63
MCF2-208ENST00000519895 NCKAP5LQ9HCH0 1330 aa4.87□□□□□ -1.63
MCF2-208ENST00000519895 PRXQ9BXM0 1461 aa4.87□□□□□ -1.63
MCF2-208ENST00000519895 WWC3Q9ULE0 1092 aa4.86□□□□□ -1.63
MCF2-208ENST00000519895 DIP2AQ14689 1571 aa4.86□□□□□ -1.63
MCF2-208ENST00000519895 ABCC3O15438 1527 aa4.86□□□□□ -1.63
MCF2-208ENST00000519895 UGGT2Q9NYU1 1516 aa4.86□□□□□ -1.63
MCF2-208ENST00000519895 AHDC1Q5TGY3 1603 aaPredicted RBP4.86□□□□□ -1.63
MCF2-208ENST00000519895 APLP1P51693 650 aa4.86□□□□□ -1.63
MCF2-208ENST00000519895 IGF1RP08069 1367 aa4.85□□□□□ -1.63
MCF2-208ENST00000519895 CTTNBP2Q8WZ74 1663 aa4.85□□□□□ -1.63
MCF2-208ENST00000519895 NUTM2BA6NNL0 878 aaPredicted RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 NUTM2EB1AL46 878 aaPredicted RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 NUTM2DQ5VT03 806 aaPredicted RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 NUTM2AQ8IVF1 878 aaPredicted RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 SUPT5HO00267 1087 aaKnown RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 RTN4Q9NQC3 1192 aaKnown RBP4.84□□□□□ -1.63
MCF2-208ENST00000519895 CAMTA1Q9Y6Y1 1673 aa4.84□□□□□ -1.64
MCF2-208ENST00000519895 A2ML1A8K2U0 1454 aa4.83□□□□□ -1.64
MCF2-208ENST00000519895 DNAJC5GQ8N7S2 189 aa4.83□□□□□ -1.64
MCF2-208ENST00000519895 IQGAP1P46940 1657 aa4.83□□□□□ -1.64
MCF2-208ENST00000519895 DNMT1P26358 1616 aaKnown RBP4.83□□□□□ -1.64
MCF2-208ENST00000519895 WDR90Q96KV7 1748 aa4.82□□□□□ -1.64
MCF2-208ENST00000519895 GOLGA3Q08378 1498 aa4.82□□□□□ -1.64
MCF2-208ENST00000519895 DISP2A7MBM2 1401 aa4.82□□□□□ -1.64
MCF2-208ENST00000519895 HECW1Q76N89 1606 aa4.82□□□□□ -1.64
MCF2-208ENST00000519895 RGPD1P0DJD0 1748 aa4.82□□□□□ -1.64
MCF2-208ENST00000519895 IQGAP2Q13576 1575 aa4.81□□□□□ -1.64
MCF2-208ENST00000519895 SAMD9Q5K651 1589 aa4.81□□□□□ -1.64
MCF2-208ENST00000519895 MLLT1Q03111 559 aaPredicted RBP4.8□□□□□ -1.64
MCF2-208ENST00000519895 MEX3CQ5U5Q3 659 aaKnown RBP4.8□□□□□ -1.64
MCF2-208ENST00000519895 CROCC2H7BZ55 1655 aa4.8□□□□□ -1.64
MCF2-208ENST00000519895 CARMIL1Q5VZK9 1371 aa4.8□□□□□ -1.64
MCF2-208ENST00000519895 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.8□□□□□ -1.64
MCF2-208ENST00000519895 RBM42Q9BTD8 480 aaKnown RBP4.8□□□□□ -1.64
MCF2-208ENST00000519895 CEBPAP49715 358 aaPredicted RBP4.79□□□□□ -1.64
MCF2-208ENST00000519895 FAM161AQ3B820 660 aa4.79□□□□□ -1.64
MCF2-208ENST00000519895 ZC3H13Q5T200 1668 aaKnown RBP4.78□□□□□ -1.64
MCF2-208ENST00000519895 ATP7AQ04656 1500 aa4.78□□□□□ -1.64
MCF2-208ENST00000519895 AMER1Q5JTC6 1135 aaPredicted RBP4.78□□□□□ -1.64
MCF2-208ENST00000519895 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.78□□□□□ -1.64
MCF2-208ENST00000519895 ATRNO75882 1429 aa4.78□□□□□ -1.64
MCF2-208ENST00000519895 AFF2P51816 1311 aa4.77□□□□□ -1.65
MCF2-208ENST00000519895 DLC1Q96QB1 1528 aa4.77□□□□□ -1.65
MCF2-208ENST00000519895 FAM83GA6ND36 823 aa4.77□□□□□ -1.65
MCF2-208ENST00000519895 MPNDQ8N594 471 aa4.77□□□□□ -1.65
MCF2-208ENST00000519895 NPHP4O75161 1426 aaPredicted RBP4.77□□□□□ -1.65
MCF2-208ENST00000519895 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.76□□□□□ -1.65
MCF2-208ENST00000519895 SF3B2Q13435 895 aaKnown RBP4.76□□□□□ -1.65
MCF2-208ENST00000519895 PARD3Q8TEW0 1356 aa4.76□□□□□ -1.65
MCF2-208ENST00000519895 DISP1Q96F81 1524 aa4.76□□□□□ -1.65
MCF2-208ENST00000519895 CNKSR2Q8WXI2 1034 aa4.76□□□□□ -1.65
MCF2-208ENST00000519895 QTRT2Q9H974 415 aaKnown RBP4.76□□□□□ -1.65
MCF2-208ENST00000519895 ADGBQ8N7X0 1667 aa4.76□□□□□ -1.65
MCF2-208ENST00000519895 RREB1Q92766 1687 aa4.76□□□□□ -1.65
MCF2-208ENST00000519895 DSG3P32926 999 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 APLP2Q06481 763 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 GCC1Q96CN9 775 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 USP19O94966 1318 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 KLRG1Q96E93 195 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 MAP3K5Q99683 1374 aa4.75□□□□□ -1.65
MCF2-208ENST00000519895 DIP2CQ9Y2E4 1556 aa4.74□□□□□ -1.65
MCF2-208ENST00000519895 DLL1O00548 723 aa4.74□□□□□ -1.65
MCF2-208ENST00000519895 MAP3K1Q13233 1512 aa4.74□□□□□ -1.65
MCF2-208ENST00000519895 FAM135AQ9P2D6 1515 aa4.73□□□□□ -1.65
MCF2-208ENST00000519895 ADGRB2O60241 1585 aa4.73□□□□□ -1.65
MCF2-208ENST00000519895 SLC4A1APQ9BWU0 796 aaKnown RBP4.73□□□□□ -1.65
MCF2-208ENST00000519895 PRDM10Q9NQV6 1147 aa4.73□□□□□ -1.65
MCF2-208ENST00000519895 TIAM1Q13009 1591 aa4.73□□□□□ -1.65
MCF2-208ENST00000519895 BRWD3Q6RI45 1802 aa4.73□□□□□ -1.65
MCF2-208ENST00000519895 BAG6P46379 1132 aa4.72□□□□□ -1.65
MCF2-208ENST00000519895 MROH1Q8NDA8 1641 aa4.72□□□□□ -1.65
MCF2-208ENST00000519895 TRPC5Q9UL62 973 aaPredicted RBP4.72□□□□□ -1.65
MCF2-208ENST00000519895 SPON1Q9HCB6 807 aa4.71□□□□□ -1.66
MCF2-208ENST00000519895 KDM5AP29375 1690 aaKnown RBP4.71□□□□□ -1.66
MCF2-208ENST00000519895 SETD5Q9C0A6 1442 aa4.71□□□□□ -1.66
MCF2-208ENST00000519895 NCOA3Q9Y6Q9 1424 aa4.71□□□□□ -1.66
MCF2-208ENST00000519895 CASZ1Q86V15 1759 aa4.7□□□□□ -1.66
MCF2-208ENST00000519895 ARID3CA6NKF2 412 aa4.7□□□□□ -1.66
MCF2-208ENST00000519895 PTCH1Q13635 1447 aa4.7□□□□□ -1.66
MCF2-208ENST00000519895 TNS1Q9HBL0 1735 aaKnown RBP4.7□□□□□ -1.66
MCF2-208ENST00000519895 PSDA5PKW4 1024 aaPredicted RBP4.7□□□□□ -1.66
MCF2-208ENST00000519895 PRPF38BQ5VTL8 546 aaKnown RBP4.7□□□□□ -1.66
MCF2-208ENST00000519895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.7□□□□□ -1.66
MCF2-208ENST00000519895 FMN1Q68DA7 1419 aa4.7□□□□□ -1.66
MCF2-208ENST00000519895 NEXMIFQ5QGS0 1516 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms