RNA–Protein interactions for RNA: ENST00000517691.1

SKP1-204, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 2,033 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-204ENST00000517691 PDZRN3Q9UPQ7 1066 aa4.8□□□□□ -1.64
SKP1-204ENST00000517691 MICALL2Q8IY33 904 aa4.8□□□□□ -1.64
SKP1-204ENST00000517691 SPRYD3Q8NCJ5 442 aa4.8□□□□□ -1.64
SKP1-204ENST00000517691 PRKD2Q9BZL6 878 aa4.8□□□□□ -1.64
SKP1-204ENST00000517691 CHGAP10645 457 aaKnown RBP4.79□□□□□ -1.64
SKP1-204ENST00000517691 PSEN2P49810 448 aa4.79□□□□□ -1.64
SKP1-204ENST00000517691 SLC4A5Q9BY07 1137 aa4.79□□□□□ -1.64
SKP1-204ENST00000517691 PSMG3-AS1Q96PY0 264 aa4.78□□□□□ -1.64
SKP1-204ENST00000517691 VPS9D1Q9Y2B5 631 aa4.78□□□□□ -1.64
SKP1-204ENST00000517691 RNF25Q96BH1 459 aaPredicted RBP4.77□□□□□ -1.65
SKP1-204ENST00000517691 TOP2AP11388 1531 aaKnown RBP4.76□□□□□ -1.65
SKP1-204ENST00000517691 TRIM41Q8WV44 630 aa4.76□□□□□ -1.65
SKP1-204ENST00000517691 POTECB2RU33 542 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 DGAT1O75907 488 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 SLC34A2O95436 690 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 HS6ST3Q8IZP7 471 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 NESP48681 1621 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 CADPSQ9ULU8 1353 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 ERCC6Q03468 1493 aa4.75□□□□□ -1.65
SKP1-204ENST00000517691 PDAP1Q13442 181 aaKnown RBP4.74□□□□□ -1.65
SKP1-204ENST00000517691 DNAJC5Q9H3Z4 198 aa4.74□□□□□ -1.65
SKP1-204ENST00000517691 PCDHGA4Q9Y5G9 962 aa4.74□□□□□ -1.65
SKP1-204ENST00000517691 CCDC88BA6NC98 1476 aa4.74□□□□□ -1.65
SKP1-204ENST00000517691 MYT1Q01538 1121 aa4.73□□□□□ -1.65
SKP1-204ENST00000517691 BHMG1C9JSJ3 638 aaPredicted RBP4.73□□□□□ -1.65
SKP1-204ENST00000517691 GSE1Q14687 1217 aa4.73□□□□□ -1.65
SKP1-204ENST00000517691 NKX1-1Q15270 411 aaPredicted RBP4.73□□□□□ -1.65
SKP1-204ENST00000517691 CABP2Q9NPB3 220 aa4.73□□□□□ -1.65
SKP1-204ENST00000517691 NFX1Q12986 1120 aaKnown RBP4.72□□□□□ -1.65
SKP1-204ENST00000517691 HOMEZQ8IX15 550 aa4.72□□□□□ -1.65
SKP1-204ENST00000517691 GTF3C3Q9Y5Q9 886 aa4.72□□□□□ -1.65
SKP1-204ENST00000517691 PDS5BQ9NTI5 1447 aa4.72□□□□□ -1.65
SKP1-204ENST00000517691 CHRM1P11229 460 aaPredicted RBP4.72□□□□□ -1.65
SKP1-204ENST00000517691 PPP4R3BQ5MIZ7 849 aa4.72□□□□□ -1.65
SKP1-204ENST00000517691 MRPL50Q8N5N7 158 aaKnown RBP4.72□□□□□ -1.65
SKP1-204ENST00000517691 BTBD11A6QL63 1104 aa4.71□□□□□ -1.66
SKP1-204ENST00000517691 PKDCCQ504Y2 493 aa4.71□□□□□ -1.66
SKP1-204ENST00000517691 LAMC3Q9Y6N6 1575 aa4.7□□□□□ -1.66
SKP1-204ENST00000517691 RIOK3O14730 519 aaKnown RBP4.7□□□□□ -1.66
SKP1-204ENST00000517691 GTPBP6O43824 516 aaPredicted RBP4.7□□□□□ -1.66
SKP1-204ENST00000517691 CFTRP13569 1480 aa4.7□□□□□ -1.66
SKP1-204ENST00000517691 FANCD2Q9BXW9 1451 aa4.68□□□□□ -1.66
SKP1-204ENST00000517691 LCE3BQ5TA77 95 aa4.67□□□□□ -1.66
SKP1-204ENST00000517691 NBPF3Q9H094 633 aa4.67□□□□□ -1.66
SKP1-204ENST00000517691 CEP164Q9UPV0 1460 aa4.67□□□□□ -1.66
SKP1-204ENST00000517691 KCNK17Q96T54 332 aa4.66□□□□□ -1.66
SKP1-204ENST00000517691 MRC2Q9UBG0 1479 aa4.65□□□□□ -1.66
SKP1-204ENST00000517691 VGFO15240 615 aaPredicted RBP4.65□□□□□ -1.66
SKP1-204ENST00000517691 ANKK1Q8NFD2 765 aa4.65□□□□□ -1.66
SKP1-204ENST00000517691 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.67
SKP1-204ENST00000517691 STK25O00506 426 aa4.65□□□□□ -1.67
SKP1-204ENST00000517691 KCTD17Q8N5Z5 321 aa4.64□□□□□ -1.67
SKP1-204ENST00000517691 KIF21AQ7Z4S6 1674 aa4.64□□□□□ -1.67
SKP1-204ENST00000517691 CUX2O14529 1486 aa4.64□□□□□ -1.67
SKP1-204ENST00000517691 ZSCAN1Q8NBB4 408 aa4.63□□□□□ -1.67
SKP1-204ENST00000517691 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.63□□□□□ -1.67
SKP1-204ENST00000517691 ZFP91Q96JP5 570 aaPredicted RBP4.63□□□□□ -1.67
SKP1-204ENST00000517691 KDM4FA0A1W2PPD8 638 aa4.62□□□□□ -1.67
SKP1-204ENST00000517691 NBR1Q14596 966 aa4.62□□□□□ -1.67
SKP1-204ENST00000517691 BCL11BQ9C0K0 894 aaPredicted RBP4.62□□□□□ -1.67
SKP1-204ENST00000517691 URB2Q14146 1524 aaKnown RBP4.62□□□□□ -1.67
SKP1-204ENST00000517691 RANGAP1P46060 587 aaPredicted RBP4.62□□□□□ -1.67
SKP1-204ENST00000517691 KCNMA1Q12791 1236 aa4.62□□□□□ -1.67
SKP1-204ENST00000517691 TMEM132AQ24JP5 1023 aa4.62□□□□□ -1.67
SKP1-204ENST00000517691 EFCAB3Q8N7B9 438 aa4.62□□□□□ -1.67
SKP1-204ENST00000517691 THOC2Q8NI27 1593 aaKnown RBP4.61□□□□□ -1.67
SKP1-204ENST00000517691 PODXL2Q9NZ53 605 aa4.61□□□□□ -1.67
SKP1-204ENST00000517691 STK24Q9Y6E0 443 aa4.61□□□□□ -1.67
SKP1-204ENST00000517691 WDR62O43379 1518 aa4.61□□□□□ -1.67
SKP1-204ENST00000517691 ABCC8Q09428 1581 aa4.6□□□□□ -1.67
SKP1-204ENST00000517691 TOPBP1Q92547 1522 aa4.6□□□□□ -1.67
SKP1-204ENST00000517691 MS4A4AQ96JQ5 239 aa4.59□□□□□ -1.67
SKP1-204ENST00000517691 KRTAP9-9Q9BYP9 154 aa4.58□□□□□ -1.68
SKP1-204ENST00000517691 KRTAP9-4Q9BYQ2 154 aa4.58□□□□□ -1.68
SKP1-204ENST00000517691 SOGA1O94964 1423 aa4.58□□□□□ -1.68
SKP1-204ENST00000517691 WRNQ14191 1432 aaPredicted RBP eCLIP4.58□□□□□ -1.68
SKP1-204ENST00000517691 DNMBPQ6XZF7 1577 aa4.58□□□□□ -1.68
SKP1-204ENST00000517691 PRDM2Q13029 1718 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 IFT140Q96RY7 1462 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 SOWAHBA6NEL2 793 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 TERTO14746 1132 aaKnown RBP4.57□□□□□ -1.68
SKP1-204ENST00000517691 KIF3CO14782 793 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PRR20EP86478 221 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PRR20CP86479 221 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PRR20DP86480 221 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PRR20BP86481 221 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PRR20AP86496 221 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 ERICH6Q7L0X2 663 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 C14orf37Q86TY3 774 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 PHF8Q9UPP1 1060 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 CUX1P39880 1505 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 RAD54L2Q9Y4B4 1467 aa4.57□□□□□ -1.68
SKP1-204ENST00000517691 TDRD9Q8NDG6 1382 aaKnown RBP4.57□□□□□ -1.68
SKP1-204ENST00000517691 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.56□□□□□ -1.68
SKP1-204ENST00000517691 RYDENQ9NUL5 291 aaKnown RBP4.56□□□□□ -1.68
SKP1-204ENST00000517691 POLA1P09884 1462 aaPredicted RBP4.56□□□□□ -1.68
SKP1-204ENST00000517691 FGD5Q6ZNL6 1462 aa4.56□□□□□ -1.68
SKP1-204ENST00000517691 SOX12O15370 315 aa4.56□□□□□ -1.68
SKP1-204ENST00000517691 CADPS2Q86UW7 1296 aa4.56□□□□□ -1.68
SKP1-204ENST00000517691 AAASQ9NRG9 546 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms