RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 TRPM1Q7Z4N2 1603 aa20.54■□□□□ 0.88
PCDH1-208ENST00000515351 DCAF11Q8TEB1 546 aa20.53■□□□□ 0.88
PCDH1-208ENST00000515351 POLR3GLQ9BT43 218 aa20.53■□□□□ 0.88
PCDH1-208ENST00000515351 KDM2AQ9Y2K7 1162 aa20.53■□□□□ 0.88
PCDH1-208ENST00000515351 ZCCHC11Q5TAX3 1644 aaKnown RBP20.52■□□□□ 0.88
PCDH1-208ENST00000515351 CCDC144AA2RUR9 1427 aa20.52■□□□□ 0.88
PCDH1-208ENST00000515351 E9PCH4 1651 aa20.52■□□□□ 0.88
PCDH1-208ENST00000515351 DUOX2Q9NRD8 1548 aa20.49■□□□□ 0.87
PCDH1-208ENST00000515351 CLASP1Q7Z460 1538 aa20.49■□□□□ 0.87
PCDH1-208ENST00000515351 PLA2R1Q13018 1463 aa20.49■□□□□ 0.87
PCDH1-208ENST00000515351 ERICH6BQ5W0A0 696 aa20.49■□□□□ 0.87
PCDH1-208ENST00000515351 PRAG1Q86YV5 1406 aa20.48■□□□□ 0.87
PCDH1-208ENST00000515351 ST20-MTHFSA0A0A6YYL1 179 aa20.48■□□□□ 0.87
PCDH1-208ENST00000515351 IRX6P78412 446 aaPredicted RBP20.48■□□□□ 0.87
PCDH1-208ENST00000515351 MAGI2Q86UL8 1455 aa20.47■□□□□ 0.87
PCDH1-208ENST00000515351 UHRF1BP1LA0JNW5 1464 aa20.46■□□□□ 0.87
PCDH1-208ENST00000515351 PLCH2O75038 1416 aa20.46■□□□□ 0.87
PCDH1-208ENST00000515351 LAMC1P11047 1609 aa20.45■□□□□ 0.86
PCDH1-208ENST00000515351 ERBINQ96RT1 1412 aa20.45■□□□□ 0.86
PCDH1-208ENST00000515351 ABCC1P33527 1531 aa20.44■□□□□ 0.86
PCDH1-208ENST00000515351 A2MP01023 1474 aa20.43■□□□□ 0.86
PCDH1-208ENST00000515351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.43■□□□□ 0.86
PCDH1-208ENST00000515351 ATP10AO60312 1499 aa20.42■□□□□ 0.86
PCDH1-208ENST00000515351 CNGB1Q14028 1251 aaPredicted RBP20.42■□□□□ 0.86
PCDH1-208ENST00000515351 EIF2AK4Q9P2K8 1649 aaKnown RBP20.41■□□□□ 0.86
PCDH1-208ENST00000515351 GPRASP1Q5JY77 1395 aa20.4■□□□□ 0.86
PCDH1-208ENST00000515351 KTN1Q86UP2 1357 aaKnown RBP20.4■□□□□ 0.86
PCDH1-208ENST00000515351 RBM19Q9Y4C8 960 aaKnown RBP20.39■□□□□ 0.85
PCDH1-208ENST00000515351 SMG6Q86US8 1419 aaKnown RBP20.39■□□□□ 0.85
PCDH1-208ENST00000515351 PRDM15P57071 1507 aaPredicted RBP20.39■□□□□ 0.85
PCDH1-208ENST00000515351 RGL3Q3MIN7 710 aa20.38■□□□□ 0.85
PCDH1-208ENST00000515351 EFCAB2Q5VUJ9 269 aa20.38■□□□□ 0.85
PCDH1-208ENST00000515351 PPP4R2Q9NY27 417 aa20.38■□□□□ 0.85
PCDH1-208ENST00000515351 PNISRQ8TF01 805 aaKnown RBP20.37■□□□□ 0.85
PCDH1-208ENST00000515351 ARAP3Q8WWN8 1544 aa20.35■□□□□ 0.85
PCDH1-208ENST00000515351 TRAPPC8Q9Y2L5 1435 aa20.35■□□□□ 0.85
PCDH1-208ENST00000515351 TMC1Q8TDI8 760 aa20.35■□□□□ 0.85
PCDH1-208ENST00000515351 RALBP1Q15311 655 aa20.34■□□□□ 0.85
PCDH1-208ENST00000515351 NBPF1Q3BBV0 1214 aa20.34■□□□□ 0.85
PCDH1-208ENST00000515351 BRD4O60885 1362 aaPredicted RBP20.34■□□□□ 0.85
PCDH1-208ENST00000515351 MYBBP1AQ9BQG0 1328 aaKnown RBP20.33■□□□□ 0.85
PCDH1-208ENST00000515351 RNF17Q9BXT8 1623 aaKnown RBP20.33■□□□□ 0.85
PCDH1-208ENST00000515351 LRPPRCP42704 1394 aaKnown RBP20.33■□□□□ 0.84
PCDH1-208ENST00000515351 COL17A1Q9UMD9 1497 aaPredicted RBP20.32■□□□□ 0.84
PCDH1-208ENST00000515351 ZFYVE16Q7Z3T8 1539 aa20.31■□□□□ 0.84
PCDH1-208ENST00000515351 NUDCQ9Y266 331 aa20.31■□□□□ 0.84
PCDH1-208ENST00000515351 RTEL1-TNFRSF6BF6WH68 1400 aa20.29■□□□□ 0.84
PCDH1-208ENST00000515351 DEPDC5O75140 1603 aa20.29■□□□□ 0.84
PCDH1-208ENST00000515351 CEP152O94986 1710 aa20.28■□□□□ 0.84
PCDH1-208ENST00000515351 SPHKAPQ2M3C7 1700 aa20.28■□□□□ 0.84
PCDH1-208ENST00000515351 PARD3Q8TEW0 1356 aa20.28■□□□□ 0.84
PCDH1-208ENST00000515351 TESK2Q96S53 571 aa20.27■□□□□ 0.83
PCDH1-208ENST00000515351 TRPM2O94759 1503 aa20.26■□□□□ 0.83
PCDH1-208ENST00000515351 SPAG9O60271 1321 aaKnown RBP20.26■□□□□ 0.83
PCDH1-208ENST00000515351 MADDQ8WXG6 1647 aa20.26■□□□□ 0.83
PCDH1-208ENST00000515351 RNF123Q5XPI4 1314 aa20.25■□□□□ 0.83
PCDH1-208ENST00000515351 ABCA9Q8IUA7 1624 aa20.25■□□□□ 0.83
PCDH1-208ENST00000515351 DISP3Q9P2K9 1392 aa20.25■□□□□ 0.83
PCDH1-208ENST00000515351 PER1O15534 1290 aaPredicted RBP20.24■□□□□ 0.83
PCDH1-208ENST00000515351 INO80Q9ULG1 1556 aaPredicted RBP20.24■□□□□ 0.83
PCDH1-208ENST00000515351 TET3O43151 1660 aa20.24■□□□□ 0.83
PCDH1-208ENST00000515351 WDR7Q9Y4E6 1490 aa20.23■□□□□ 0.83
PCDH1-208ENST00000515351 IQGAP1P46940 1657 aa20.23■□□□□ 0.83
PCDH1-208ENST00000515351 NLRP13Q86W25 1043 aa20.22■□□□□ 0.83
PCDH1-208ENST00000515351 B4GALNT3Q6L9W6 998 aa20.22■□□□□ 0.83
PCDH1-208ENST00000515351 AFAP1Q8N556 730 aa20.22■□□□□ 0.83
PCDH1-208ENST00000515351 ANP32EQ9BTT0 268 aa20.22■□□□□ 0.83
PCDH1-208ENST00000515351 WASHC2CQ9Y4E1 1318 aa20.21■□□□□ 0.83
PCDH1-208ENST00000515351 ATP7AQ04656 1500 aa20.21■□□□□ 0.83
PCDH1-208ENST00000515351 CLTCL1P53675 1640 aa20.21■□□□□ 0.83
PCDH1-208ENST00000515351 PTPRTO14522 1441 aa20.2■□□□□ 0.82
PCDH1-208ENST00000515351 FANCAO15360 1455 aa20.19■□□□□ 0.82
PCDH1-208ENST00000515351 VWDEQ8N2E2 1590 aa20.18■□□□□ 0.82
PCDH1-208ENST00000515351 TMF1P82094 1093 aa20.18■□□□□ 0.82
PCDH1-208ENST00000515351 SENP3-EIF4A1A0A087X0R7 540 aa20.17■□□□□ 0.82
PCDH1-208ENST00000515351 PANK3Q9H999 370 aa20.14■□□□□ 0.82
PCDH1-208ENST00000515351 FANCIQ9NVI1 1328 aa20.14■□□□□ 0.81
PCDH1-208ENST00000515351 KIAA1210Q9ULL0 1709 aa20.13■□□□□ 0.81
PCDH1-208ENST00000515351 STAC3Q96MF2 364 aa20.13■□□□□ 0.81
PCDH1-208ENST00000515351 ZMYM4Q5VZL5 1548 aa20.13■□□□□ 0.81
PCDH1-208ENST00000515351 ADGRL1O94910 1474 aa20.12■□□□□ 0.81
PCDH1-208ENST00000515351 NEURL4Q96JN8 1562 aa20.12■□□□□ 0.81
PCDH1-208ENST00000515351 MROH1Q8NDA8 1641 aa20.12■□□□□ 0.81
PCDH1-208ENST00000515351 KANK1Q14678 1352 aa20.12■□□□□ 0.81
PCDH1-208ENST00000515351 SCAPERQ9BY12 1400 aa20.12■□□□□ 0.81
PCDH1-208ENST00000515351 CC2D1BQ5T0F9 858 aaKnown RBP20.12■□□□□ 0.81
PCDH1-208ENST00000515351 INSRP06213 1382 aa20.11■□□□□ 0.81
PCDH1-208ENST00000515351 SCAF11Q99590 1463 aaKnown RBP20.1■□□□□ 0.81
PCDH1-208ENST00000515351 SYNMO15061 1565 aa20.08■□□□□ 0.81
PCDH1-208ENST00000515351 KIF1BO60333 1816 aa20.08■□□□□ 0.81
PCDH1-208ENST00000515351 BLMP54132 1417 aaPredicted RBP20.08■□□□□ 0.8
PCDH1-208ENST00000515351 KIDINS220Q9ULH0 1771 aa20.07■□□□□ 0.8
PCDH1-208ENST00000515351 PDE3BQ13370 1112 aa20.07■□□□□ 0.8
PCDH1-208ENST00000515351 ASXL2Q76L83 1435 aa20.07■□□□□ 0.8
PCDH1-208ENST00000515351 KIF3BO15066 747 aa20.06■□□□□ 0.8
PCDH1-208ENST00000515351 MYOM1P52179 1685 aa20.06■□□□□ 0.8
PCDH1-208ENST00000515351 IFT172Q9UG01 1749 aa20.05■□□□□ 0.8
PCDH1-208ENST00000515351 MSH5O43196 834 aa20.05■□□□□ 0.8
PCDH1-208ENST00000515351 CCDC136Q96JN2 1154 aa20.05■□□□□ 0.8
PCDH1-208ENST00000515351 EFCAB6Q5THR3 1501 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms