RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 FCHSD2O94868 740 aa11.4□□□□□ -0.58
HMGCS1-207ENST00000514610 NPDC1Q9NQX5 325 aaPredicted RBP11.4□□□□□ -0.58
HMGCS1-207ENST00000514610 GNPATO15228 680 aa11.39□□□□□ -0.59
HMGCS1-207ENST00000514610 HOXB1P14653 301 aaPredicted RBP11.39□□□□□ -0.59
HMGCS1-207ENST00000514610 FBXW7Q969H0 707 aa11.39□□□□□ -0.59
HMGCS1-207ENST00000514610 BRPF1P55201 1214 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-207ENST00000514610 HIC1Q14526 733 aa11.38□□□□□ -0.59
HMGCS1-207ENST00000514610 KRI1Q8N9T8 703 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-207ENST00000514610 ZDHHC16Q969W1 377 aa11.37□□□□□ -0.59
HMGCS1-207ENST00000514610 AK7Q96M32 723 aa11.37□□□□□ -0.59
HMGCS1-207ENST00000514610 ADAM33Q9BZ11 813 aa11.37□□□□□ -0.59
HMGCS1-207ENST00000514610 EMP3P54852 163 aa11.36□□□□□ -0.59
HMGCS1-207ENST00000514610 MAP2K5Q13163 448 aa11.35□□□□□ -0.59
HMGCS1-207ENST00000514610 C6orf132Q5T0Z8 1188 aa11.34□□□□□ -0.59
HMGCS1-207ENST00000514610 MINK1Q8N4C8 1332 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-207ENST00000514610 IRF6O14896 467 aa11.32□□□□□ -0.6
HMGCS1-207ENST00000514610 TRIM66O15016 1216 aa11.32□□□□□ -0.6
HMGCS1-207ENST00000514610 CCDC102AQ96A19 550 aa11.32□□□□□ -0.6
HMGCS1-207ENST00000514610 POTEB3A0JP26 581 aa11.31□□□□□ -0.6
HMGCS1-207ENST00000514610 POTEBQ6S5H4 581 aa11.31□□□□□ -0.6
HMGCS1-207ENST00000514610 NEUROD2Q15784 382 aa11.3□□□□□ -0.6
HMGCS1-207ENST00000514610 PPP4R3BQ5MIZ7 849 aa11.3□□□□□ -0.6
HMGCS1-207ENST00000514610 SPNS2Q8IVW8 549 aa11.3□□□□□ -0.6
HMGCS1-207ENST00000514610 HS3ST6Q96QI5 342 aa11.29□□□□□ -0.6
HMGCS1-207ENST00000514610 PSDA5PKW4 1024 aaPredicted RBP11.28□□□□□ -0.6
HMGCS1-207ENST00000514610 FAM205CA6NFA0 338 aa11.28□□□□□ -0.6
HMGCS1-207ENST00000514610 MMRN1Q13201 1228 aa11.27□□□□□ -0.61
HMGCS1-207ENST00000514610 BCL2L12Q9HB09 334 aa11.27□□□□□ -0.61
HMGCS1-207ENST00000514610 COL9A1P20849 921 aa11.26□□□□□ -0.61
HMGCS1-207ENST00000514610 PDE4DQ08499 809 aa11.26□□□□□ -0.61
HMGCS1-207ENST00000514610 GPBP1L1Q9HC44 474 aaPredicted RBP11.26□□□□□ -0.61
HMGCS1-207ENST00000514610 PADI6Q6TGC4 694 aa11.25□□□□□ -0.61
HMGCS1-207ENST00000514610 KRTAP3-3Q9BYR6 98 aa11.25□□□□□ -0.61
HMGCS1-207ENST00000514610 KRTAP3-2Q9BYR7 98 aa11.25□□□□□ -0.61
HMGCS1-207ENST00000514610 CERKQ8TCT0 537 aa11.24□□□□□ -0.61
HMGCS1-207ENST00000514610 FAM161AQ3B820 660 aa11.23□□□□□ -0.61
HMGCS1-207ENST00000514610 TTC13Q8NBP0 860 aa11.23□□□□□ -0.61
HMGCS1-207ENST00000514610 AMHR2Q16671 573 aa11.21□□□□□ -0.61
HMGCS1-207ENST00000514610 FAM198AQ9UFP1 575 aa11.21□□□□□ -0.61
HMGCS1-207ENST00000514610 PTPREP23469 700 aa11.2□□□□□ -0.62
HMGCS1-207ENST00000514610 PRSS12P56730 875 aa11.2□□□□□ -0.62
HMGCS1-207ENST00000514610 CDCA7LQ96GN5 454 aa11.2□□□□□ -0.62
HMGCS1-207ENST00000514610 RBM27Q9P2N5 1060 aaKnown RBP11.2□□□□□ -0.62
HMGCS1-207ENST00000514610 ERBB3P21860 1342 aa11.19□□□□□ -0.62
HMGCS1-207ENST00000514610 PPP1R3GB7ZBB8 358 aa11.19□□□□□ -0.62
HMGCS1-207ENST00000514610 VARS2Q5ST30 1063 aaKnown RBP11.19□□□□□ -0.62
HMGCS1-207ENST00000514610 PHOX2BQ99453 314 aa11.19□□□□□ -0.62
HMGCS1-207ENST00000514610 KDM4CQ9H3R0 1056 aa11.19□□□□□ -0.62
HMGCS1-207ENST00000514610 POTEEQ6S8J3 1075 aa11.18□□□□□ -0.62
HMGCS1-207ENST00000514610 PARP9Q8IXQ6 854 aa11.18□□□□□ -0.62
HMGCS1-207ENST00000514610 ADGRG1Q9Y653 693 aa11.18□□□□□ -0.62
HMGCS1-207ENST00000514610 TMEM132AQ24JP5 1023 aa11.17□□□□□ -0.62
HMGCS1-207ENST00000514610 KCNK17Q96T54 332 aa11.17□□□□□ -0.62
HMGCS1-207ENST00000514610 TSKSQ9UJT2 592 aa11.16□□□□□ -0.62
HMGCS1-207ENST00000514610 C3orf80F5H4A9 247 aa11.15□□□□□ -0.62
HMGCS1-207ENST00000514610 METTL3Q86U44 580 aaKnown RBP11.15□□□□□ -0.62
HMGCS1-207ENST00000514610 REPIN1Q9BWE0 567 aaKnown RBP11.15□□□□□ -0.62
HMGCS1-207ENST00000514610 PSEN2P49810 448 aa11.14□□□□□ -0.63
HMGCS1-207ENST00000514610 PXYLP1Q8TE99 480 aa11.14□□□□□ -0.63
HMGCS1-207ENST00000514610 NLRP7Q8WX94 980 aa11.14□□□□□ -0.63
HMGCS1-207ENST00000514610 PROX2Q3B8N5 592 aa11.13□□□□□ -0.63
HMGCS1-207ENST00000514610 TTLL12Q14166 644 aaPredicted RBP11.12□□□□□ -0.63
HMGCS1-207ENST00000514610 TMUB1Q9BVT8 246 aa11.12□□□□□ -0.63
HMGCS1-207ENST00000514610 TRIM6-TRIM34B2RNG4 842 aa11.11□□□□□ -0.63
HMGCS1-207ENST00000514610 OATP04181 439 aa11.11□□□□□ -0.63
HMGCS1-207ENST00000514610 AXIN2Q9Y2T1 843 aa11.11□□□□□ -0.63
HMGCS1-207ENST00000514610 MDM2Q00987 491 aaPredicted RBP11.1□□□□□ -0.63
HMGCS1-207ENST00000514610 ZBED2Q9BTP6 218 aa11.1□□□□□ -0.63
HMGCS1-207ENST00000514610 DMRTA1Q5VZB9 504 aa11.09□□□□□ -0.63
HMGCS1-207ENST00000514610 GIGYF2Q6Y7W6 1299 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-207ENST00000514610 FAM117AQ9C073 453 aa11.09□□□□□ -0.63
HMGCS1-207ENST00000514610 ARHGAP33O14559 1287 aa11.08□□□□□ -0.64
HMGCS1-207ENST00000514610 IL27Q8NEV9 243 aa11.08□□□□□ -0.64
HMGCS1-207ENST00000514610 EYA1Q99502 592 aa11.08□□□□□ -0.64
HMGCS1-207ENST00000514610 MS4A1P11836 297 aa11.07□□□□□ -0.64
HMGCS1-207ENST00000514610 NUDT18Q6ZVK8 323 aa11.07□□□□□ -0.64
HMGCS1-207ENST00000514610 ZNF687Q8N1G0 1237 aa11.07□□□□□ -0.64
HMGCS1-207ENST00000514610 RBM46Q8TBY0 533 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-207ENST00000514610 CLCN1P35523 988 aa11.06□□□□□ -0.64
HMGCS1-207ENST00000514610 KCNH8Q96L42 1107 aa11.06□□□□□ -0.64
HMGCS1-207ENST00000514610 GPCPD1Q9NPB8 672 aa11.06□□□□□ -0.64
HMGCS1-207ENST00000514610 PLEKHG3A1L390 1219 aa11.05□□□□□ -0.64
HMGCS1-207ENST00000514610 TATDN2Q93075 761 aa11.05□□□□□ -0.64
HMGCS1-207ENST00000514610 PNMA3Q9UL41 463 aa11.05□□□□□ -0.64
HMGCS1-207ENST00000514610 NBPF26B4DH59 902 aa11.04□□□□□ -0.64
HMGCS1-207ENST00000514610 SMAPO00193 183 aa11.04□□□□□ -0.64
HMGCS1-207ENST00000514610 ONECUT3O60422 494 aaPredicted RBP11.04□□□□□ -0.64
HMGCS1-207ENST00000514610 PBX2P40425 430 aa11.04□□□□□ -0.64
HMGCS1-207ENST00000514610 KIAA1468Q9P260 1216 aa11.04□□□□□ -0.64
HMGCS1-207ENST00000514610 RCCD1A6NED2 376 aa11.03□□□□□ -0.64
HMGCS1-207ENST00000514610 PACS2Q86VP3 889 aa11.03□□□□□ -0.64
HMGCS1-207ENST00000514610 SLC4A5Q9BY07 1137 aa11.02□□□□□ -0.65
HMGCS1-207ENST00000514610 FAM217BQ9NTX9 383 aaPredicted RBP11.02□□□□□ -0.65
HMGCS1-207ENST00000514610 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.01□□□□□ -0.65
HMGCS1-207ENST00000514610 SSTR3P32745 418 aaPredicted RBP11□□□□□ -0.65
HMGCS1-207ENST00000514610 VPS9D1Q9Y2B5 631 aa11□□□□□ -0.65
HMGCS1-207ENST00000514610 DDRGK1Q96HY6 314 aa10.99□□□□□ -0.65
HMGCS1-207ENST00000514610 RABGEF1Q9UJ41 708 aa10.99□□□□□ -0.65
HMGCS1-207ENST00000514610 DNAJB2P25686 324 aa10.98□□□□□ -0.65
HMGCS1-207ENST00000514610 TMEM134Q9H6X4 195 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms