RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 CALD1Q05682 793 aaKnown RBP9.69□□□□□ -0.86
NIPBL-208ENST00000514335 HDAC5Q9UQL6 1122 aa9.69□□□□□ -0.86
NIPBL-208ENST00000514335 NEFMP07197 916 aa9.69□□□□□ -0.86
NIPBL-208ENST00000514335 SETQ01105 290 aaPredicted RBP9.69□□□□□ -0.86
NIPBL-208ENST00000514335 UGGT2Q9NYU1 1516 aa9.68□□□□□ -0.86
NIPBL-208ENST00000514335 CFAP74Q9C0B2 1584 aa9.68□□□□□ -0.86
NIPBL-208ENST00000514335 CLGNO14967 610 aa9.68□□□□□ -0.86
NIPBL-208ENST00000514335 TMEM51Q9NW97 253 aa9.68□□□□□ -0.86
NIPBL-208ENST00000514335 DIEXFQ68CQ4 756 aaKnown RBP9.68□□□□□ -0.86
NIPBL-208ENST00000514335 NPM3O75607 178 aaKnown RBP9.67□□□□□ -0.86
NIPBL-208ENST00000514335 KCTD17Q8N5Z5 321 aa9.67□□□□□ -0.86
NIPBL-208ENST00000514335 ABCC2Q92887 1545 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 FANCIQ9NVI1 1328 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 MAFGO15525 162 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 ARID3CA6NKF2 412 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 MMP14P50281 582 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 NBR1Q14596 966 aa9.66□□□□□ -0.86
NIPBL-208ENST00000514335 ILDR1Q86SU0 546 aaPredicted RBP9.66□□□□□ -0.86
NIPBL-208ENST00000514335 C11orf95C9JLR9 678 aaPredicted RBP9.65□□□□□ -0.86
NIPBL-208ENST00000514335 ZNF622Q969S3 477 aaKnown RBP eCLIP9.65□□□□□ -0.863e-6■□□□□ 10.4
NIPBL-208ENST00000514335 ARAP3Q8WWN8 1544 aa9.65□□□□□ -0.87
NIPBL-208ENST00000514335 SGSM3Q96HU1 749 aa9.65□□□□□ -0.87
NIPBL-208ENST00000514335 PHF14O94880 888 aa9.64□□□□□ -0.87
NIPBL-208ENST00000514335 IRX3P78415 501 aaPredicted RBP9.63□□□□□ -0.87
NIPBL-208ENST00000514335 PLEKHD1A6NEE1 506 aa9.63□□□□□ -0.87
NIPBL-208ENST00000514335 TMTC2Q8N394 836 aa9.63□□□□□ -0.87
NIPBL-208ENST00000514335 ADAMTSL3P82987 1691 aa9.63□□□□□ -0.87
NIPBL-208ENST00000514335 RAD54L2Q9Y4B4 1467 aa9.62□□□□□ -0.87
NIPBL-208ENST00000514335 LAS1LQ9Y4W2 734 aaKnown RBP9.62□□□□□ -0.87
NIPBL-208ENST00000514335 MPNDQ8N594 471 aa9.62□□□□□ -0.87
NIPBL-208ENST00000514335 APPP05067 770 aa9.61□□□□□ -0.87
NIPBL-208ENST00000514335 FOXD4L6Q3SYB3 417 aaPredicted RBP9.61□□□□□ -0.87
NIPBL-208ENST00000514335 FOXD4L3Q6VB84 417 aaPredicted RBP9.61□□□□□ -0.87
NIPBL-208ENST00000514335 REREQ9P2R6 1566 aa9.61□□□□□ -0.87
NIPBL-208ENST00000514335 PSEN1P49768 467 aa9.6□□□□□ -0.87
NIPBL-208ENST00000514335 SH3BP1Q9Y3L3 701 aa9.6□□□□□ -0.87
NIPBL-208ENST00000514335 ZMYM4Q5VZL5 1548 aa9.58□□□□□ -0.88
NIPBL-208ENST00000514335 VGFO15240 615 aaPredicted RBP9.57□□□□□ -0.88
NIPBL-208ENST00000514335 ABCA9Q8IUA7 1624 aa9.56□□□□□ -0.88
NIPBL-208ENST00000514335 IQGAP2Q13576 1575 aa9.56□□□□□ -0.88
NIPBL-208ENST00000514335 EPRSP07814 1512 aaKnown RBP9.56□□□□□ -0.88
NIPBL-208ENST00000514335 FAM135AQ9P2D6 1515 aa9.56□□□□□ -0.88
NIPBL-208ENST00000514335 CTTNBP2Q8WZ74 1663 aa9.55□□□□□ -0.88
NIPBL-208ENST00000514335 IRF6O14896 467 aa9.54□□□□□ -0.88
NIPBL-208ENST00000514335 HSP90AA1P07900 732 aaKnown RBP9.54□□□□□ -0.88
NIPBL-208ENST00000514335 NGEFQ8N5V2 710 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 NEO1Q92859 1461 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 CARMIL2Q6F5E8 1435 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 BRPF1P55201 1214 aaPredicted RBP9.53□□□□□ -0.88
NIPBL-208ENST00000514335 SEMA3FQ13275 785 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 CHMP7Q8WUX9 453 aaPredicted RBP9.53□□□□□ -0.88
NIPBL-208ENST00000514335 ZCCHC11Q5TAX3 1644 aaKnown RBP9.53□□□□□ -0.88
NIPBL-208ENST00000514335 ABCA8O94911 1581 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 HECW2Q9P2P5 1572 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 GOLGA3Q08378 1498 aa9.53□□□□□ -0.88
NIPBL-208ENST00000514335 PRG4Q92954 1404 aaPredicted RBP9.52□□□□□ -0.88
NIPBL-208ENST00000514335 LOC102724159A0A0B4J2E5 919 aa9.52□□□□□ -0.89
NIPBL-208ENST00000514335 PWP2Q15269 919 aaKnown RBP9.52□□□□□ -0.89
NIPBL-208ENST00000514335 E9PSI1 815 aa9.52□□□□□ -0.89
NIPBL-208ENST00000514335 EGFL6Q8IUX8 553 aa9.52□□□□□ -0.89
NIPBL-208ENST00000514335 TNIKQ9UKE5 1360 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 KIAA0556O60303 1618 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 BRD1O95696 1058 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 RGL3Q3MIN7 710 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 MAGI2Q86UL8 1455 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 CYB5RLQ6IPT4 315 aa9.51□□□□□ -0.89
NIPBL-208ENST00000514335 ADGRL1O94910 1474 aa9.5□□□□□ -0.89
NIPBL-208ENST00000514335 P3H3Q8IVL6 736 aa9.5□□□□□ -0.89
NIPBL-208ENST00000514335 BCORL1Q5H9F3 1711 aa9.5□□□□□ -0.89
NIPBL-208ENST00000514335 AXDND1Q5T1B0 1012 aaPredicted RBP9.5□□□□□ -0.89
NIPBL-208ENST00000514335 CARD10Q9BWT7 1032 aa9.49□□□□□ -0.89
NIPBL-208ENST00000514335 HSP90AB4PQ58FF6 505 aa9.49□□□□□ -0.89
NIPBL-208ENST00000514335 CENPJQ9HC77 1338 aaPredicted RBP9.49□□□□□ -0.89
NIPBL-208ENST00000514335 FAM43AQ8N2R8 423 aa9.49□□□□□ -0.89
NIPBL-208ENST00000514335 ARHGEF40Q8TER5 1519 aa9.48□□□□□ -0.89
NIPBL-208ENST00000514335 TDRD9Q8NDG6 1382 aaKnown RBP9.48□□□□□ -0.89
NIPBL-208ENST00000514335 EXOC8Q8IYI6 725 aa9.48□□□□□ -0.89
NIPBL-208ENST00000514335 ZHX1Q9UKY1 873 aaPredicted RBP9.48□□□□□ -0.89
NIPBL-208ENST00000514335 TTC37Q6PGP7 1564 aa9.47□□□□□ -0.89
NIPBL-208ENST00000514335 WASHC2CQ9Y4E1 1318 aa9.47□□□□□ -0.89
NIPBL-208ENST00000514335 ZNF316A6NFI3 1004 aaPredicted RBP9.45□□□□□ -0.9
NIPBL-208ENST00000514335 CC2D1BQ5T0F9 858 aaKnown RBP9.45□□□□□ -0.9
NIPBL-208ENST00000514335 UACAQ9BZF9 1416 aa9.45□□□□□ -0.9
NIPBL-208ENST00000514335 WDR7Q9Y4E6 1490 aa9.45□□□□□ -0.9
NIPBL-208ENST00000514335 MROH2AA6NES4 1674 aa9.44□□□□□ -0.9
NIPBL-208ENST00000514335 PRR29P0C7W0 189 aa9.44□□□□□ -0.9
NIPBL-208ENST00000514335 KIF27Q86VH2 1401 aa9.43□□□□□ -0.9
NIPBL-208ENST00000514335 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.43□□□□□ -0.9
NIPBL-208ENST00000514335 FBXO41Q8TF61 875 aa9.43□□□□□ -0.9
NIPBL-208ENST00000514335 RIPOR2Q9Y4F9 1068 aa9.43□□□□□ -0.9
NIPBL-208ENST00000514335 DNAJC14Q6Y2X3 702 aaPredicted RBP9.42□□□□□ -0.9
NIPBL-208ENST00000514335 AEBP1Q8IUX7 1158 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 DISP1Q96F81 1524 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 NBPF11Q86T75 865 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 CHMP4CQ96CF2 233 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 PREX1Q8TCU6 1659 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 NBPF1Q3BBV0 1214 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 NBPF20Q3BBV1 942 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 RINLQ6ZS11 566 aa9.42□□□□□ -0.9
NIPBL-208ENST00000514335 EFCAB5A4FU69 1503 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms