RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 Q6ZNB5 142 aa9.6□□□□□ -0.87
PDLIM5-218ENST00000513341 DDX27Q96GQ7 796 aaKnown RBP9.6□□□□□ -0.87
PDLIM5-218ENST00000513341 PHF14O94880 888 aa9.59□□□□□ -0.87
PDLIM5-218ENST00000513341 KCNC4Q03721 635 aa9.59□□□□□ -0.87
PDLIM5-218ENST00000513341 PROX2Q3B8N5 592 aa9.59□□□□□ -0.87
PDLIM5-218ENST00000513341 COL9A1P20849 921 aa9.58□□□□□ -0.88
PDLIM5-218ENST00000513341 TYW1BQ6NUM6 668 aa9.58□□□□□ -0.88
PDLIM5-218ENST00000513341 ZFRQ96KR1 1074 aaKnown RBP9.58□□□□□ -0.88
PDLIM5-218ENST00000513341 BCAMP50895 628 aa9.57□□□□□ -0.88
PDLIM5-218ENST00000513341 LARP6Q9BRS8 491 aaKnown RBP9.56□□□□□ -0.88
PDLIM5-218ENST00000513341 EMILIN3Q9NT22 766 aa9.55□□□□□ -0.88
PDLIM5-218ENST00000513341 WBP1LQ9NX94 342 aa9.54□□□□□ -0.88
PDLIM5-218ENST00000513341 KIAA1468Q9P260 1216 aa9.54□□□□□ -0.88
PDLIM5-218ENST00000513341 EPAS1Q99814 870 aa9.53□□□□□ -0.88
PDLIM5-218ENST00000513341 GTPBP6O43824 516 aaPredicted RBP9.51□□□□□ -0.89
PDLIM5-218ENST00000513341 FAM98CQ17RN3 349 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-218ENST00000513341 TSR3Q9UJK0 312 aaKnown RBP9.51□□□□□ -0.89
PDLIM5-218ENST00000513341 TRIM6-TRIM34B2RNG4 842 aa9.49□□□□□ -0.89
PDLIM5-218ENST00000513341 C6orf132Q5T0Z8 1188 aa9.49□□□□□ -0.89
PDLIM5-218ENST00000513341 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.47□□□□□ -0.89
PDLIM5-218ENST00000513341 LCE2BO14633 110 aa9.46□□□□□ -0.9
PDLIM5-218ENST00000513341 TRAF7Q6Q0C0 670 aa9.46□□□□□ -0.9
PDLIM5-218ENST00000513341 LRCH3Q96II8 777 aa9.46□□□□□ -0.9
PDLIM5-218ENST00000513341 CAMK2BQ13554 666 aa9.45□□□□□ -0.9
PDLIM5-218ENST00000513341 SEPT9Q9UHD8 586 aaPredicted RBP9.44□□□□□ -0.9
PDLIM5-218ENST00000513341 HPS5Q9UPZ3 1129 aa9.44□□□□□ -0.9
PDLIM5-218ENST00000513341 GFRA3O60609 400 aa9.43□□□□□ -0.9
PDLIM5-218ENST00000513341 NRG2O14511 850 aaPredicted RBP9.41□□□□□ -0.9
PDLIM5-218ENST00000513341 V9GY48 417 aaPredicted RBP9.4□□□□□ -0.9
PDLIM5-218ENST00000513341 TJAP1Q5JTD0 557 aa9.39□□□□□ -0.91
PDLIM5-218ENST00000513341 PACS2Q86VP3 889 aa9.39□□□□□ -0.91
PDLIM5-218ENST00000513341 PPP4CP60510 307 aa9.37□□□□□ -0.91
PDLIM5-218ENST00000513341 PRKD2Q9BZL6 878 aa9.36□□□□□ -0.91
PDLIM5-218ENST00000513341 TSKSQ9UJT2 592 aa9.35□□□□□ -0.91
PDLIM5-218ENST00000513341 EN1Q05925 392 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-218ENST00000513341 CADPS2Q86UW7 1296 aa9.34□□□□□ -0.91
PDLIM5-218ENST00000513341 IL21Q9HBE4 155 aa9.34□□□□□ -0.91
PDLIM5-218ENST00000513341 DPYSL4O14531 572 aa9.33□□□□□ -0.92
PDLIM5-218ENST00000513341 NISCHQ9Y2I1 1504 aa9.32□□□□□ -0.92
PDLIM5-218ENST00000513341 RBM33Q96EV2 1170 aaKnown RBP9.32□□□□□ -0.92
PDLIM5-218ENST00000513341 PPP1R18Q6NYC8 613 aa9.31□□□□□ -0.92
PDLIM5-218ENST00000513341 CERKQ8TCT0 537 aa9.31□□□□□ -0.92
PDLIM5-218ENST00000513341 MTRQ99707 1265 aa9.3□□□□□ -0.92
PDLIM5-218ENST00000513341 SAMD7Q7Z3H4 446 aa9.29□□□□□ -0.92
PDLIM5-218ENST00000513341 DDX12PQ92771 950 aa9.29□□□□□ -0.92
PDLIM5-218ENST00000513341 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.29□□□□□ -0.92
PDLIM5-218ENST00000513341 PRSS12P56730 875 aa9.28□□□□□ -0.92
PDLIM5-218ENST00000513341 PDIA6Q15084 440 aa9.28□□□□□ -0.92
PDLIM5-218ENST00000513341 MAP3K7O43318 606 aa9.27□□□□□ -0.93
PDLIM5-218ENST00000513341 CDCA7LQ96GN5 454 aa9.27□□□□□ -0.93
PDLIM5-218ENST00000513341 SPDYE16A6NNV3 312 aaPredicted RBP9.26□□□□□ -0.93
PDLIM5-218ENST00000513341 NBR1Q14596 966 aa9.26□□□□□ -0.93
PDLIM5-218ENST00000513341 TSR1Q2NL82 804 aaKnown RBP9.26□□□□□ -0.93
PDLIM5-218ENST00000513341 NECTIN2Q92692 538 aa9.26□□□□□ -0.93
PDLIM5-218ENST00000513341 NBPF26B4DH59 902 aa9.25□□□□□ -0.93
PDLIM5-218ENST00000513341 ZNF787Q6DD87 383 aa9.25□□□□□ -0.93
PDLIM5-218ENST00000513341 TATDN2Q93075 761 aa9.24□□□□□ -0.93
PDLIM5-218ENST00000513341 TMUB1Q9BVT8 246 aa9.24□□□□□ -0.93
PDLIM5-218ENST00000513341 FAM198AQ9UFP1 575 aa9.24□□□□□ -0.93
PDLIM5-218ENST00000513341 RBM27Q9P2N5 1060 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-218ENST00000513341 PDZRN3Q9UPQ7 1066 aa9.23□□□□□ -0.93
PDLIM5-218ENST00000513341 GGCXP38435 758 aa9.22□□□□□ -0.93
PDLIM5-218ENST00000513341 ZNF516Q92618 1163 aa9.22□□□□□ -0.93
PDLIM5-218ENST00000513341 HDGFP51858 240 aaKnown RBP9.21□□□□□ -0.94
PDLIM5-218ENST00000513341 SMAPO00193 183 aa9.2□□□□□ -0.94
PDLIM5-218ENST00000513341 APLP1P51693 650 aa9.2□□□□□ -0.94
PDLIM5-218ENST00000513341 ARIH1Q9Y4X5 557 aaPredicted RBP9.2□□□□□ -0.94
PDLIM5-218ENST00000513341 PNMA3Q9UL41 463 aa9.19□□□□□ -0.94
PDLIM5-218ENST00000513341 C3orf80F5H4A9 247 aa9.18□□□□□ -0.94
PDLIM5-218ENST00000513341 ZNF775Q96BV0 537 aaPredicted RBP9.18□□□□□ -0.94
PDLIM5-218ENST00000513341 TTC13Q8NBP0 860 aa9.15□□□□□ -0.94
PDLIM5-218ENST00000513341 NKX2-3Q8TAU0 364 aa9.15□□□□□ -0.94
PDLIM5-218ENST00000513341 NUDT18Q6ZVK8 323 aa9.14□□□□□ -0.95
PDLIM5-218ENST00000513341 SLF2Q8IX21 1173 aa9.14□□□□□ -0.95
PDLIM5-218ENST00000513341 PRIM1P49642 420 aaKnown RBP9.13□□□□□ -0.95
PDLIM5-218ENST00000513341 ZPR1O75312 459 aa9.12□□□□□ -0.95
PDLIM5-218ENST00000513341 TRIM67Q6ZTA4 783 aa9.12□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR14Q9BWN1 585 aa9.12□□□□□ -0.95
PDLIM5-218ENST00000513341 DGAT1O75907 488 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR20EP86478 221 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR20CP86479 221 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR20DP86480 221 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR20BP86481 221 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 PRR20AP86496 221 aa9.11□□□□□ -0.95
PDLIM5-218ENST00000513341 RNF40O75150 1001 aa9.09□□□□□ -0.95
PDLIM5-218ENST00000513341 OSBPP22059 807 aa9.09□□□□□ -0.95
PDLIM5-218ENST00000513341 SLC19A1P41440 591 aa9.08□□□□□ -0.96
PDLIM5-218ENST00000513341 SLC4A3P48751 1232 aa9.08□□□□□ -0.96
PDLIM5-218ENST00000513341 COPS2P61201 443 aa9.08□□□□□ -0.96
PDLIM5-218ENST00000513341 MYT1Q01538 1121 aa9.08□□□□□ -0.96
PDLIM5-218ENST00000513341 SWT1Q5T5J6 900 aaKnown RBP9.08□□□□□ -0.96
PDLIM5-218ENST00000513341 E2F4Q16254 413 aa9.07□□□□□ -0.96
PDLIM5-218ENST00000513341 GRXCR2A6NFK2 248 aa9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 RNF223E7ERA6 249 aa9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 PKDCCQ504Y2 493 aa9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 SPRYD7Q5W111 196 aa9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 ZNF598Q86UK7 904 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 EMID1Q96A84 441 aaPredicted RBP9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 CDHR5Q9HBB8 845 aa9.06□□□□□ -0.96
PDLIM5-218ENST00000513341 ANKLE1Q8NAG6 615 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms