RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 DHX57Q6P158 1386 aaKnown RBP5.35□□□□□ -1.55
VCAN-209ENST00000513016 WWC1Q8IX03 1113 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 GRIN2BQ13224 1484 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 GPRASP1Q5JY77 1395 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 KLHL34Q8N239 644 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 HSP90AB1P08238 724 aaKnown RBP5.35□□□□□ -1.55
VCAN-209ENST00000513016 NEXNQ0ZGT2 675 aa5.35□□□□□ -1.55
VCAN-209ENST00000513016 CHAF1AQ13111 956 aaPredicted RBP5.34□□□□□ -1.55
VCAN-209ENST00000513016 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.34□□□□□ -1.55
VCAN-209ENST00000513016 SMC4Q9NTJ3 1288 aa5.34□□□□□ -1.55
VCAN-209ENST00000513016 MRC2Q9UBG0 1479 aa5.34□□□□□ -1.55
VCAN-209ENST00000513016 DDX58O95786 925 aaKnown RBP5.34□□□□□ -1.55
VCAN-209ENST00000513016 ANKLE2Q86XL3 938 aa5.34□□□□□ -1.55
VCAN-209ENST00000513016 IFT140Q96RY7 1462 aa5.34□□□□□ -1.55
VCAN-209ENST00000513016 HSPA5P11021 654 aaKnown RBP5.34□□□□□ -1.56
VCAN-209ENST00000513016 CGNL1Q0VF96 1302 aa5.34□□□□□ -1.56
VCAN-209ENST00000513016 PTMAP06454 111 aaKnown RBP5.33□□□□□ -1.56
VCAN-209ENST00000513016 TXNDC2Q86VQ3 553 aa5.33□□□□□ -1.56
VCAN-209ENST00000513016 SYTL4Q96C24 671 aaPredicted RBP5.33□□□□□ -1.56
VCAN-209ENST00000513016 TRIM44Q96DX7 344 aaPredicted RBP5.33□□□□□ -1.56
VCAN-209ENST00000513016 SMARCA4P51532 1647 aa5.33□□□□□ -1.56
VCAN-209ENST00000513016 PHLDB1Q86UU1 1377 aa5.33□□□□□ -1.56
VCAN-209ENST00000513016 RWDD1Q9H446 243 aaPredicted RBP5.33□□□□□ -1.56
VCAN-209ENST00000513016 MARCH6O60337 910 aa5.33□□□□□ -1.56
VCAN-209ENST00000513016 KIAA2012Q0VF49 1180 aa5.33□□□□□ -1.56
VCAN-209ENST00000513016 RBM33Q96EV2 1170 aaKnown RBP5.32□□□□□ -1.56
VCAN-209ENST00000513016 KIF3AQ9Y496 699 aa5.32□□□□□ -1.56
VCAN-209ENST00000513016 SYNJ2O15056 1496 aa5.32□□□□□ -1.56
VCAN-209ENST00000513016 MINK1Q8N4C8 1332 aaPredicted RBP5.32□□□□□ -1.56
VCAN-209ENST00000513016 HSCBQ8IWL3 235 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 MYOM3Q5VTT5 1437 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 KRI1Q8N9T8 703 aaKnown RBP5.31□□□□□ -1.56
VCAN-209ENST00000513016 PMFBP1Q8TBY8 1022 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 MIA2Q96PC5 1412 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 FGD5Q6ZNL6 1462 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 CCER2I3L3R5 266 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 PLEKHH2Q8IVE3 1493 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 SLC4A10Q6U841 1118 aa5.31□□□□□ -1.56
VCAN-209ENST00000513016 PRG4Q92954 1404 aaPredicted RBP5.3□□□□□ -1.56
VCAN-209ENST00000513016 VPS37DQ86XT2 251 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 ITPRIPQ8IWB1 547 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 TOMM22Q9NS69 142 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 NLRP2Q9NX02 1062 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 PPP4R2Q9NY27 417 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 TCEAL9Q9UHQ7 104 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 RGS3P49796 1198 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 KANK4Q5T7N3 995 aaPredicted RBP5.3□□□□□ -1.56
VCAN-209ENST00000513016 NCBP3Q53F19 620 aaKnown RBP5.3□□□□□ -1.56
VCAN-209ENST00000513016 SYNE3Q6ZMZ3 975 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 NGEFQ8N5V2 710 aa5.3□□□□□ -1.56
VCAN-209ENST00000513016 IRX6P78412 446 aaPredicted RBP5.3□□□□□ -1.56
VCAN-209ENST00000513016 VPS53Q5VIR6 699 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 MIER1Q8N108 512 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 AQRO60306 1485 aaKnown RBP eCLIP5.29□□□□□ -1.56
VCAN-209ENST00000513016 PTMSP20962 102 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 AKAP17AQ02040 695 aaKnown RBP5.29□□□□□ -1.56
VCAN-209ENST00000513016 NLRP13Q86W25 1043 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 TPM4P67936 248 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 RASSF8Q8NHQ8 419 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 SLC52A1Q9NWF4 448 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 APBB1O00213 710 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 CPLX2Q6PUV4 134 aaKnown RBP5.29□□□□□ -1.56
VCAN-209ENST00000513016 DIAPH1O60610 1272 aaKnown RBP5.29□□□□□ -1.56
VCAN-209ENST00000513016 PDE3BQ13370 1112 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 ESCO1Q5FWF5 840 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 FBXW7Q969H0 707 aa5.29□□□□□ -1.56
VCAN-209ENST00000513016 NUTM2BA6NNL0 878 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 NUTM2EB1AL46 878 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 NUTM2AQ8IVF1 878 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 CSPP1Q1MSJ5 1256 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 RAB3GAP2Q9H2M9 1393 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 CENPJQ9HC77 1338 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 PLEKHO1Q53GL0 409 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 TATP17735 454 aaPredicted RBP5.28□□□□□ -1.56
VCAN-209ENST00000513016 L3MBTL2Q969R5 705 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 NLRP6P59044 892 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 WIZO95785 1651 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 TRIM6-TRIM34B2RNG4 842 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 PIP4K2BP78356 416 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 IGF1RP08069 1367 aa5.28□□□□□ -1.56
VCAN-209ENST00000513016 C9orf78Q9NZ63 289 aaPredicted RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 TPRNQ4KMQ1 711 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 CEP89Q96ST8 783 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 SMG6Q86US8 1419 aaKnown RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 GLIPR1L2Q4G1C9 344 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 PLCB2Q00722 1185 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 SUPT16HQ9Y5B9 1047 aaKnown RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 RAD54L2Q9Y4B4 1467 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 ARHGAP5Q13017 1502 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 ZNF692Q9BU19 519 aaPredicted RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 KIF15Q9NS87 1388 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 HSP90AB4PQ58FF6 505 aa5.27□□□□□ -1.57
VCAN-209ENST00000513016 WDHD1O75717 1129 aaPredicted RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 CCAR1Q8IX12 1150 aaKnown RBP5.27□□□□□ -1.57
VCAN-209ENST00000513016 PRM3Q9NNZ6 103 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 KIF6Q6ZMV9 814 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 DNTTIP2Q5QJE6 756 aaKnown RBP5.26□□□□□ -1.57
VCAN-209ENST00000513016 RUFY2Q8WXA3 655 aa5.26□□□□□ -1.57
VCAN-209ENST00000513016 API5Q9BZZ5 524 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms