RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LETM1O95202 739 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-217ENST00000512946 AAMPQ13685 434 aa13.75□□□□□ -0.21
LIMCH1-217ENST00000512946 CC2D1BQ5T0F9 858 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 MORC1Q86VD1 984 aa13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 ROCK2O75116 1388 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 CPLX2Q6PUV4 134 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 NGEFQ8N5V2 710 aa13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 TNIKQ9UKE5 1360 aa13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 A0A0G2JS52 829 aa13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 CCDC173Q0VFZ6 552 aa13.74□□□□□ -0.21
LIMCH1-217ENST00000512946 H3BQV1 296 aa13.73□□□□□ -0.21
LIMCH1-217ENST00000512946 IFFO2Q5TF58 517 aa13.73□□□□□ -0.21
LIMCH1-217ENST00000512946 RGL3Q3MIN7 710 aa13.73□□□□□ -0.21
LIMCH1-217ENST00000512946 PRKCSHP14314 528 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-217ENST00000512946 REC8O95072 547 aa13.72□□□□□ -0.21
LIMCH1-217ENST00000512946 NEFHP12036 1026 aa13.72□□□□□ -0.21
LIMCH1-217ENST00000512946 CGNL1Q0VF96 1302 aa13.72□□□□□ -0.21
LIMCH1-217ENST00000512946 POGKQ9P215 609 aa13.71□□□□□ -0.21
LIMCH1-217ENST00000512946 FAM184AQ8NB25 1140 aa13.71□□□□□ -0.21
LIMCH1-217ENST00000512946 KIAA0754O94854 1291 aa13.71□□□□□ -0.21
LIMCH1-217ENST00000512946 R3HCC1Q9Y3T6 440 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 PLEKHD1A6NEE1 506 aa13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 LMOD3Q0VAK6 560 aa13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 NPHP1O15259 732 aa13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 LRRFIP1Q32MZ4 808 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 IFT57Q9NWB7 429 aa13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 CENPJQ9HC77 1338 aaPredicted RBP13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 NAT10Q9H0A0 1025 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-217ENST00000512946 MBD3O95983 291 aa13.69□□□□□ -0.22
LIMCH1-217ENST00000512946 TRIM6-TRIM34B2RNG4 842 aa13.69□□□□□ -0.22
LIMCH1-217ENST00000512946 SASS6Q6UVJ0 657 aa13.69□□□□□ -0.22
LIMCH1-217ENST00000512946 EIF3JO75822 258 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 NLRP13Q86W25 1043 aa13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 PES1O00541 588 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 NASPP49321 788 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 RUFY2Q8WXA3 655 aa13.68□□□□□ -0.22
LIMCH1-217ENST00000512946 RNF20Q5VTR2 975 aa13.67□□□□□ -0.22
LIMCH1-217ENST00000512946 TAF7LQ5H9L4 462 aa13.66□□□□□ -0.22
LIMCH1-217ENST00000512946 CREBRFQ8IUR6 639 aa13.66□□□□□ -0.22
LIMCH1-217ENST00000512946 HSP90AB3PQ58FF7 597 aa13.66□□□□□ -0.22
LIMCH1-217ENST00000512946 DYDC1Q8WWB3 177 aa13.66□□□□□ -0.22
LIMCH1-217ENST00000512946 SMC4Q9NTJ3 1288 aa13.66□□□□□ -0.22
LIMCH1-217ENST00000512946 ERLIN1O75477 346 aa13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 NCBP3Q53F19 620 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 ZCCHC6Q5VYS8 1495 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 HDGFP51858 240 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 FAM107BQ9H098 131 aa13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 CCNB3Q8WWL7 1395 aa13.65□□□□□ -0.22
LIMCH1-217ENST00000512946 GORABQ5T7V8 394 aa13.64□□□□□ -0.23
LIMCH1-217ENST00000512946 CFDP1Q9UEE9 299 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-217ENST00000512946 SPAG9O60271 1321 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-217ENST00000512946 HSPA5P11021 654 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-217ENST00000512946 AKAP17AQ02040 695 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 ZKSCAN1P17029 563 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 MARCH6O60337 910 aa13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 CCDC73Q6ZRK6 1079 aa13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 SIN3AQ96ST3 1273 aa13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 RABEP1Q15276 862 aa13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 EIF3AQ14152 1382 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-217ENST00000512946 NFKBIBQ15653 356 aa13.62□□□□□ -0.23
LIMCH1-217ENST00000512946 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-217ENST00000512946 SYNE3Q6ZMZ3 975 aa13.62□□□□□ -0.23
LIMCH1-217ENST00000512946 CEP164Q9UPV0 1460 aa13.62□□□□□ -0.23
LIMCH1-217ENST00000512946 KIF7Q2M1P5 1343 aa13.62□□□□□ -0.23
LIMCH1-217ENST00000512946 APBB1O00213 710 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 TRIM29Q14134 588 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 GIMAP7Q8NHV1 300 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 CALCOCO1Q9P1Z2 691 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 TXLNBQ8N3L3 684 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 BICD2Q8TD16 824 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 ZBED9Q6R2W3 1325 aa13.61□□□□□ -0.23
LIMCH1-217ENST00000512946 ERLIN2O94905 339 aa13.6□□□□□ -0.23
LIMCH1-217ENST00000512946 PCMTD1Q96MG8 357 aaPredicted RBP13.6□□□□□ -0.23
LIMCH1-217ENST00000512946 FOXD4L1Q9NU39 408 aa13.6□□□□□ -0.23
LIMCH1-217ENST00000512946 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
LIMCH1-217ENST00000512946 CT47B1P0C2W7 299 aaPredicted RBP13.6□□□□□ -0.23
LIMCH1-217ENST00000512946 PIP4K2AP48426 406 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 ANKRD18AQ8IVF6 992 aa13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 SETD5Q9C0A6 1442 aa13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 GOLGA6L10A6NI86 522 aa13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 U2AF1L5P0DN76 240 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 U2AF1Q01081 240 aaKnown RBP eCLIP13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 FHAD1B1AJZ9 1412 aa13.59□□□□□ -0.23
LIMCH1-217ENST00000512946 SMARCE1Q969G3 411 aa13.58□□□□□ -0.24
LIMCH1-217ENST00000512946 PDE4CQ08493 712 aa13.58□□□□□ -0.24
LIMCH1-217ENST00000512946 AXDND1Q5T1B0 1012 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 KANK1Q14678 1352 aa13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 KIF2AO00139 706 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 MCM2P49736 904 aa13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 RRP1P56182 461 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 CCDC112Q8NEF3 446 aa13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 OLFM4Q6UX06 510 aa13.57□□□□□ -0.24
LIMCH1-217ENST00000512946 E9PSI1 815 aa13.56□□□□□ -0.24
LIMCH1-217ENST00000512946 GBP3Q9H0R5 595 aa13.56□□□□□ -0.24
LIMCH1-217ENST00000512946 ZKSCAN2Q63HK3 967 aa13.55□□□□□ -0.24
LIMCH1-217ENST00000512946 DCAF11Q8TEB1 546 aa13.55□□□□□ -0.24
LIMCH1-217ENST00000512946 LUC7LQ9NQ29 371 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms