RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CHMP5Q9NZZ3 219 aa15.26■□□□□ 0.03
LIMCH1-213ENST00000511496 CCDC173Q0VFZ6 552 aa15.26■□□□□ 0.03
LIMCH1-213ENST00000511496 DNTTIP2Q5QJE6 756 aaKnown RBP15.26■□□□□ 0.03
LIMCH1-213ENST00000511496 LRRC9Q6ZRR7 1453 aa15.25■□□□□ 0.03
LIMCH1-213ENST00000511496 NASPP49321 788 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-213ENST00000511496 CGNQ9P2M7 1197 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 DYNC1I1O14576 645 aa15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 RRP7BPQ9NSQ0 103 aa15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 ISY1Q9ULR0 285 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 E9PSI1 815 aa15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 CHMP4AQ9BY43 222 aa15.24■□□□□ 0.03
LIMCH1-213ENST00000511496 DDX11L8A8MPP1 907 aa15.23■□□□□ 0.03
LIMCH1-213ENST00000511496 KIF20AO95235 890 aa15.23■□□□□ 0.03
LIMCH1-213ENST00000511496 RSPH4AQ5TD94 716 aa15.23■□□□□ 0.03
LIMCH1-213ENST00000511496 FTSJ3Q8IY81 847 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-213ENST00000511496 CHIC2Q9UKJ5 165 aa15.22■□□□□ 0.03
LIMCH1-213ENST00000511496 ZFP91Q96JP5 570 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-213ENST00000511496 JARID2Q92833 1246 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-213ENST00000511496 TSC1Q92574 1164 aa15.21■□□□□ 0.02
LIMCH1-213ENST00000511496 GTPBP4Q9BZE4 634 aaKnown RBP15.21■□□□□ 0.02
LIMCH1-213ENST00000511496 LRPPRCP42704 1394 aaKnown RBP15.2■□□□□ 0.02
LIMCH1-213ENST00000511496 TIAM1Q13009 1591 aa15.2■□□□□ 0.02
LIMCH1-213ENST00000511496 LETM1O95202 739 aaPredicted RBP15.2■□□□□ 0.02
LIMCH1-213ENST00000511496 MYBBP1AQ9BQG0 1328 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-213ENST00000511496 IGHDP01880 384 aa15.18■□□□□ 0.02
LIMCH1-213ENST00000511496 PPP1R9BQ96SB3 815 aa15.18■□□□□ 0.02
LIMCH1-213ENST00000511496 PRXQ9BXM0 1461 aa15.17■□□□□ 0.02
LIMCH1-213ENST00000511496 SPDYE4A6NLX3 237 aa15.17■□□□□ 0.02
LIMCH1-213ENST00000511496 MYOM3Q5VTT5 1437 aa15.16■□□□□ 0.02
LIMCH1-213ENST00000511496 TBC1D32Q96NH3 1257 aa15.16■□□□□ 0.02
LIMCH1-213ENST00000511496 PANK3Q9H999 370 aa15.16■□□□□ 0.02
LIMCH1-213ENST00000511496 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.15■□□□□ 0.02
LIMCH1-213ENST00000511496 SASS6Q6UVJ0 657 aa15.15■□□□□ 0.02
LIMCH1-213ENST00000511496 CERS3Q8IU89 383 aa15.15■□□□□ 0.02
LIMCH1-213ENST00000511496 BRD4O60885 1362 aaPredicted RBP15.15■□□□□ 0.02
LIMCH1-213ENST00000511496 FAM177BA6PVY3 158 aa15.14■□□□□ 0.01
LIMCH1-213ENST00000511496 PTPRKQ15262 1439 aa15.14■□□□□ 0.01
LIMCH1-213ENST00000511496 ATP2B3Q16720 1220 aa15.13■□□□□ 0.01
LIMCH1-213ENST00000511496 ZNF771Q7L3S4 317 aaPredicted RBP15.13■□□□□ 0.01
LIMCH1-213ENST00000511496 FMN1Q68DA7 1419 aa15.13■□□□□ 0.01
LIMCH1-213ENST00000511496 DHX37Q8IY37 1157 aaKnown RBP15.13■□□□□ 0.01
LIMCH1-213ENST00000511496 TNPO1Q92973 898 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-213ENST00000511496 MPHOSPH9Q99550 1183 aa15.12■□□□□ 0.01
LIMCH1-213ENST00000511496 CSPP1Q1MSJ5 1256 aa15.12■□□□□ 0.01
LIMCH1-213ENST00000511496 NOL7Q9UMY1 257 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-213ENST00000511496 HFM1A2PYH4 1435 aa15.12■□□□□ 0.01
LIMCH1-213ENST00000511496 FOXD4L1Q9NU39 408 aa15.11■□□□□ 0.01
LIMCH1-213ENST00000511496 RALBP1Q15311 655 aa15.11■□□□□ 0.01
LIMCH1-213ENST00000511496 ZNF500O60304 480 aaPredicted RBP15.11■□□□□ 0.01
LIMCH1-213ENST00000511496 KIF15Q9NS87 1388 aa15.11■□□□□ 0.01
LIMCH1-213ENST00000511496 MFAP1P55081 439 aaKnown RBP15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 AEBP1Q8IUX7 1158 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 SECISBP2LQ93073 1101 aaKnown RBP15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 GBP4Q96PP9 640 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 HSCBQ8IWL3 235 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 NAIPQ13075 1403 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 SPATA31E1Q6ZUB1 1445 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 NLRP13Q86W25 1043 aa15.1■□□□□ 0.01
LIMCH1-213ENST00000511496 MAPK8IP3Q9UPT6 1336 aa15.09■□□□□ 0.01
LIMCH1-213ENST00000511496 KCNJ4P48050 445 aa15.09■□□□□ 0.01
LIMCH1-213ENST00000511496 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.09■□□□□ 0.01
LIMCH1-213ENST00000511496 SKOR2Q2VWA4 1001 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-213ENST00000511496 TAF3Q5VWG9 929 aa15.08■□□□□ 0
LIMCH1-213ENST00000511496 DDX49Q9Y6V7 483 aaKnown RBP15.08■□□□□ 0
LIMCH1-213ENST00000511496 C22orf23Q9BZE7 217 aa15.07■□□□□ 0
LIMCH1-213ENST00000511496 ZKSCAN5Q9Y2L8 839 aa15.07■□□□□ 0
LIMCH1-213ENST00000511496 USP47Q96K76 1375 aa15.06■□□□□ 0
LIMCH1-213ENST00000511496 IRX3P78415 501 aaPredicted RBP15.06■□□□□ 0
LIMCH1-213ENST00000511496 IRX5P78411 483 aaPredicted RBP15.05■□□□□ 0
LIMCH1-213ENST00000511496 PTPN23Q9H3S7 1636 aa15.05■□□□□ -0
LIMCH1-213ENST00000511496 ZNF710Q8N1W2 664 aa15.05■□□□□ -0
LIMCH1-213ENST00000511496 NLRP1Q9C000 1473 aa15.04■□□□□ -0
LIMCH1-213ENST00000511496 BCAR3O75815 825 aa15.04■□□□□ -0
LIMCH1-213ENST00000511496 CC2D1BQ5T0F9 858 aaKnown RBP15.04■□□□□ -0
LIMCH1-213ENST00000511496 MPNDQ8N594 471 aa15.04■□□□□ -0
LIMCH1-213ENST00000511496 FGD6Q6ZV73 1430 aa15.04■□□□□ -0
LIMCH1-213ENST00000511496 PTMAP06454 111 aaKnown RBP15.03■□□□□ -0
LIMCH1-213ENST00000511496 HSP90AB1P08238 724 aaKnown RBP15.02■□□□□ -0
LIMCH1-213ENST00000511496 ZBTB9Q96C00 473 aa15.02■□□□□ -0
LIMCH1-213ENST00000511496 HS1BP3Q53T59 392 aa15.02■□□□□ -0
LIMCH1-213ENST00000511496 DUSP27Q5VZP5 1158 aa15.02■□□□□ -0
LIMCH1-213ENST00000511496 ZNF692Q9BU19 519 aaPredicted RBP15.02■□□□□ -0
LIMCH1-213ENST00000511496 MYRIPQ8NFW9 859 aa15.02□□□□□ -0.01
LIMCH1-213ENST00000511496 COG6Q9Y2V7 657 aa15.02□□□□□ -0.01
LIMCH1-213ENST00000511496 TEX2Q8IWB9 1127 aa15.01□□□□□ -0.01
LIMCH1-213ENST00000511496 ABCA5Q8WWZ7 1642 aa15.01□□□□□ -0.01
LIMCH1-213ENST00000511496 GOLGA6L22H0YM25 854 aa15.01□□□□□ -0.01
LIMCH1-213ENST00000511496 U2AF2P26368 475 aaKnown RBP eCLIP15.01□□□□□ -0.01
LIMCH1-213ENST00000511496 CAVIN1Q6NZI2 390 aaKnown RBP15□□□□□ -0.01
LIMCH1-213ENST00000511496 RBSNQ9H1K0 784 aa15□□□□□ -0.01
LIMCH1-213ENST00000511496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15□□□□□ -0.01
LIMCH1-213ENST00000511496 PDCL2Q8N4E4 241 aa14.99□□□□□ -0.01
LIMCH1-213ENST00000511496 PANK1Q8TE04 598 aa14.98□□□□□ -0.01
LIMCH1-213ENST00000511496 GOLGA2Q08379 1002 aa14.98□□□□□ -0.01
LIMCH1-213ENST00000511496 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 RGS22Q8NE09 1264 aa14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 CLUAP1Q96AJ1 413 aa14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 ADAMTS8Q9UP79 889 aa14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 PDZRN3Q9UPQ7 1066 aa14.97□□□□□ -0.01
LIMCH1-213ENST00000511496 TRERF1Q96PN7 1200 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms