RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 PPP1R3GB7ZBB8 358 aa14.49□□□□□ -0.09
NUP54-210ENST00000510884 DDX12PQ92771 950 aa14.46□□□□□ -0.09
NUP54-210ENST00000510884 BHMG1C9JSJ3 638 aaPredicted RBP14.43□□□□□ -0.1
NUP54-210ENST00000510884 COL9A1P20849 921 aa14.43□□□□□ -0.1
NUP54-210ENST00000510884 PLCB2Q00722 1185 aa14.43□□□□□ -0.1
NUP54-210ENST00000510884 C6orf132Q5T0Z8 1188 aa14.41□□□□□ -0.1
NUP54-210ENST00000510884 EN1Q05925 392 aaPredicted RBP14.4□□□□□ -0.1
NUP54-210ENST00000510884 NBR1Q14596 966 aa14.4□□□□□ -0.1
NUP54-210ENST00000510884 STAC3Q96MF2 364 aa14.39□□□□□ -0.11
NUP54-210ENST00000510884 RBM33Q96EV2 1170 aaKnown RBP14.37□□□□□ -0.11
NUP54-210ENST00000510884 KCNV2Q8TDN2 545 aa14.36□□□□□ -0.11
NUP54-210ENST00000510884 PROX2Q3B8N5 592 aa14.35□□□□□ -0.11
NUP54-210ENST00000510884 ARHGEF1Q92888 912 aaKnown RBP14.35□□□□□ -0.11
NUP54-210ENST00000510884 NBPF3Q9H094 633 aa14.35□□□□□ -0.11
NUP54-210ENST00000510884 RABGEF1Q9UJ41 708 aa14.35□□□□□ -0.11
NUP54-210ENST00000510884 HCSTQ9UBK5 93 aa14.34□□□□□ -0.11
NUP54-210ENST00000510884 KCTD12Q96CX2 325 aaKnown RBP14.33□□□□□ -0.12
NUP54-210ENST00000510884 MAP3K7O43318 606 aa14.32□□□□□ -0.12
NUP54-210ENST00000510884 ONECUT3O60422 494 aaPredicted RBP14.32□□□□□ -0.12
NUP54-210ENST00000510884 PRIM1P49642 420 aaKnown RBP14.32□□□□□ -0.12
NUP54-210ENST00000510884 MRPL50Q8N5N7 158 aaKnown RBP14.32□□□□□ -0.12
NUP54-210ENST00000510884 GRXCR2A6NFK2 248 aa14.31□□□□□ -0.12
NUP54-210ENST00000510884 TSR1Q2NL82 804 aaKnown RBP14.31□□□□□ -0.12
NUP54-210ENST00000510884 OSBPP22059 807 aa14.29□□□□□ -0.12
NUP54-210ENST00000510884 TRIM6-TRIM34B2RNG4 842 aa14.27□□□□□ -0.13
NUP54-210ENST00000510884 P3H3Q8IVL6 736 aa14.27□□□□□ -0.13
NUP54-210ENST00000510884 KIAA1468Q9P260 1216 aa14.25□□□□□ -0.13
NUP54-210ENST00000510884 THSD4Q6ZMP0 1018 aa14.24□□□□□ -0.13
NUP54-210ENST00000510884 LAPTM4BQ86VI4 370 aa14.24□□□□□ -0.13
NUP54-210ENST00000510884 GOLGA8CPA6NN73 597 aa14.23□□□□□ -0.13
NUP54-210ENST00000510884 WNT2BQ93097 391 aa14.23□□□□□ -0.13
NUP54-210ENST00000510884 CERKQ8TCT0 537 aa14.22□□□□□ -0.13
NUP54-210ENST00000510884 TSKSQ9UJT2 592 aa14.2□□□□□ -0.14
NUP54-210ENST00000510884 CDHR5Q9HBB8 845 aa14.19□□□□□ -0.14
NUP54-210ENST00000510884 MLLT3P42568 568 aaPredicted RBP14.17□□□□□ -0.14
NUP54-210ENST00000510884 PRSS12P56730 875 aa14.17□□□□□ -0.14
NUP54-210ENST00000510884 CDCA7LQ96GN5 454 aa14.17□□□□□ -0.14
NUP54-210ENST00000510884 ANKK1Q8NFD2 765 aa14.16□□□□□ -0.14
NUP54-210ENST00000510884 RBM27Q9P2N5 1060 aaKnown RBP14.16□□□□□ -0.14
NUP54-210ENST00000510884 SEPT9Q9UHD8 586 aaPredicted RBP14.16□□□□□ -0.14
NUP54-210ENST00000510884 HAP1P54257 671 aaPredicted RBP14.15□□□□□ -0.14
NUP54-210ENST00000510884 PTPN5P54829 565 aa14.15□□□□□ -0.14
NUP54-210ENST00000510884 FAM98CQ17RN3 349 aaKnown RBP14.15□□□□□ -0.14
NUP54-210ENST00000510884 PACS2Q86VP3 889 aa14.15□□□□□ -0.14
NUP54-210ENST00000510884 ZFRQ96KR1 1074 aaKnown RBP14.15□□□□□ -0.14
NUP54-210ENST00000510884 FAM198AQ9UFP1 575 aa14.14□□□□□ -0.15
NUP54-210ENST00000510884 PLA2G2EQ9NZK7 142 aa14.12□□□□□ -0.15
NUP54-210ENST00000510884 NPDC1Q9NQX5 325 aaPredicted RBP14.11□□□□□ -0.15
NUP54-210ENST00000510884 SOWAHBA6NEL2 793 aa14.1□□□□□ -0.15
NUP54-210ENST00000510884 BCAMP50895 628 aa14.08□□□□□ -0.16
NUP54-210ENST00000510884 TTC13Q8NBP0 860 aa14.08□□□□□ -0.16
NUP54-210ENST00000510884 NBPF26B4DH59 902 aa14.07□□□□□ -0.16
NUP54-210ENST00000510884 SEMA3EO15041 775 aa14.06□□□□□ -0.16
NUP54-210ENST00000510884 KDM2AQ9Y2K7 1162 aa14.06□□□□□ -0.16
NUP54-210ENST00000510884 C3orf80F5H4A9 247 aa14.05□□□□□ -0.16
NUP54-210ENST00000510884 TATDN2Q93075 761 aa14.04□□□□□ -0.16
NUP54-210ENST00000510884 PADI6Q6TGC4 694 aa14.03□□□□□ -0.16
NUP54-210ENST00000510884 SMAPO00193 183 aa14.02□□□□□ -0.17
NUP54-210ENST00000510884 LRCH3Q96II8 777 aa14.02□□□□□ -0.17
NUP54-210ENST00000510884 PTGDRQ13258 359 aa14.01□□□□□ -0.17
NUP54-210ENST00000510884 NYAP1Q6ZVC0 841 aa14.01□□□□□ -0.17
NUP54-210ENST00000510884 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.01□□□□□ -0.17
NUP54-210ENST00000510884 PNMA3Q9UL41 463 aa14.01□□□□□ -0.17
NUP54-210ENST00000510884 IFFO2Q5TF58 517 aa14□□□□□ -0.17
NUP54-210ENST00000510884 TESPA1A2RU30 521 aaPredicted RBP13.99□□□□□ -0.17
NUP54-210ENST00000510884 NUDT18Q6ZVK8 323 aa13.98□□□□□ -0.17
NUP54-210ENST00000510884 WBP1LQ9NX94 342 aa13.98□□□□□ -0.17
NUP54-210ENST00000510884 TSR3Q9UJK0 312 aaKnown RBP13.97□□□□□ -0.17
NUP54-210ENST00000510884 VSIG10Q8N0Z9 540 aa13.96□□□□□ -0.17
NUP54-210ENST00000510884 HPS5Q9UPZ3 1129 aa13.96□□□□□ -0.17
NUP54-210ENST00000510884 SAMD7Q7Z3H4 446 aa13.95□□□□□ -0.18
NUP54-210ENST00000510884 NUTM2FA1L443 756 aa13.93□□□□□ -0.18
NUP54-210ENST00000510884 ITGBL1O95965 494 aaPredicted RBP13.93□□□□□ -0.18
NUP54-210ENST00000510884 EYA1Q99502 592 aa13.91□□□□□ -0.18
NUP54-210ENST00000510884 SMYD5Q6GMV2 418 aa13.9□□□□□ -0.18
NUP54-210ENST00000510884 FCHSD2O94868 740 aa13.89□□□□□ -0.19
NUP54-210ENST00000510884 PPP4CP60510 307 aa13.86□□□□□ -0.19
NUP54-210ENST00000510884 RBM26Q5T8P6 1007 aaKnown RBP13.86□□□□□ -0.19
NUP54-210ENST00000510884 ADGRG1Q9Y653 693 aa13.86□□□□□ -0.19
NUP54-210ENST00000510884 HDGFP51858 240 aaKnown RBP13.84□□□□□ -0.19
NUP54-210ENST00000510884 A0A0G2JS52 829 aa13.83□□□□□ -0.2
NUP54-210ENST00000510884 SWT1Q5T5J6 900 aaKnown RBP13.83□□□□□ -0.2
NUP54-210ENST00000510884 GPR37O15354 613 aa13.82□□□□□ -0.2
NUP54-210ENST00000510884 HIC1Q14526 733 aa13.82□□□□□ -0.2
NUP54-210ENST00000510884 RBM46Q8TBY0 533 aaKnown RBP13.81□□□□□ -0.2
NUP54-210ENST00000510884 SLF2Q8IX21 1173 aa13.8□□□□□ -0.2
NUP54-210ENST00000510884 NECTIN2Q92692 538 aa13.8□□□□□ -0.2
NUP54-210ENST00000510884 DNAJB2P25686 324 aa13.79□□□□□ -0.2
NUP54-210ENST00000510884 RNF40O75150 1001 aa13.78□□□□□ -0.2
NUP54-210ENST00000510884 KCNC4Q03721 635 aa13.78□□□□□ -0.2
NUP54-210ENST00000510884 FAM161AQ3B820 660 aa13.76□□□□□ -0.21
NUP54-210ENST00000510884 TMEM134Q9H6X4 195 aa13.76□□□□□ -0.21
NUP54-210ENST00000510884 RGS20O76081 388 aa13.75□□□□□ -0.21
NUP54-210ENST00000510884 GNPATO15228 680 aa13.74□□□□□ -0.21
NUP54-210ENST00000510884 SLC4A3P48751 1232 aa13.74□□□□□ -0.21
NUP54-210ENST00000510884 APLP1P51693 650 aa13.74□□□□□ -0.21
NUP54-210ENST00000510884 TJAP1Q5JTD0 557 aa13.74□□□□□ -0.21
NUP54-210ENST00000510884 RCCD1A6NED2 376 aa13.73□□□□□ -0.21
NUP54-210ENST00000510884 PXYLP1Q8TE99 480 aa13.73□□□□□ -0.21
NUP54-210ENST00000510884 OATP04181 439 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms