RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 PRKD2Q9BZL6 878 aa10.41□□□□□ -0.74
RFC1-208ENST00000504849 KIAA1468Q9P260 1216 aa10.38□□□□□ -0.75
RFC1-208ENST00000504849 PCDHGA10Q9Y5H3 936 aa10.38□□□□□ -0.75
RFC1-208ENST00000504849 PKD2Q13563 968 aa10.37□□□□□ -0.75
RFC1-208ENST00000504849 SEPT9Q9UHD8 586 aaPredicted RBP10.36□□□□□ -0.75
RFC1-208ENST00000504849 TSR3Q9UJK0 312 aaKnown RBP10.35□□□□□ -0.75
RFC1-208ENST00000504849 NCKAP5LQ9HCH0 1330 aa10.34□□□□□ -0.75
RFC1-208ENST00000504849 HPS5Q9UPZ3 1129 aa10.34□□□□□ -0.75
RFC1-208ENST00000504849 V9GY48 417 aaPredicted RBP10.34□□□□□ -0.75
RFC1-208ENST00000504849 TJAP1Q5JTD0 557 aa10.33□□□□□ -0.76
RFC1-208ENST00000504849 ONECUT3O60422 494 aaPredicted RBP10.32□□□□□ -0.76
RFC1-208ENST00000504849 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.3□□□□□ -0.76
RFC1-208ENST00000504849 FAM98CQ17RN3 349 aaKnown RBP10.29□□□□□ -0.76
RFC1-208ENST00000504849 PPP1R18Q6NYC8 613 aa10.29□□□□□ -0.76
RFC1-208ENST00000504849 PDZRN3Q9UPQ7 1066 aa10.28□□□□□ -0.76
RFC1-208ENST00000504849 HS6ST3Q8IZP7 471 aa10.27□□□□□ -0.77
RFC1-208ENST00000504849 LRCH3Q96II8 777 aa10.27□□□□□ -0.77
RFC1-208ENST00000504849 TYW1BQ6NUM6 668 aa10.26□□□□□ -0.77
RFC1-208ENST00000504849 TRIM6-TRIM34B2RNG4 842 aa10.25□□□□□ -0.77
RFC1-208ENST00000504849 FBXW7Q969H0 707 aa10.25□□□□□ -0.77
RFC1-208ENST00000504849 LCE2AQ5TA79 106 aaPredicted RBP10.24□□□□□ -0.77
RFC1-208ENST00000504849 EMILIN3Q9NT22 766 aa10.24□□□□□ -0.77
RFC1-208ENST00000504849 PHF14O94880 888 aa10.23□□□□□ -0.77
RFC1-208ENST00000504849 MAP3K9P80192 1104 aa10.23□□□□□ -0.77
RFC1-208ENST00000504849 POTECB2RU33 542 aa10.22□□□□□ -0.77
RFC1-208ENST00000504849 NKX1-1Q15270 411 aaPredicted RBP10.22□□□□□ -0.77
RFC1-208ENST00000504849 C6orf132Q5T0Z8 1188 aa10.21□□□□□ -0.77
RFC1-208ENST00000504849 MTRQ99707 1265 aa10.21□□□□□ -0.77
RFC1-208ENST00000504849 PDE4AP27815 886 aa10.2□□□□□ -0.78
RFC1-208ENST00000504849 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.2□□□□□ -0.78
RFC1-208ENST00000504849 TRIM67Q6ZTA4 783 aa10.19□□□□□ -0.78
RFC1-208ENST00000504849 ZNF516Q92618 1163 aa10.18□□□□□ -0.78
RFC1-208ENST00000504849 IL21Q9HBE4 155 aa10.18□□□□□ -0.78
RFC1-208ENST00000504849 PPP4CP60510 307 aa10.17□□□□□ -0.78
RFC1-208ENST00000504849 MFSD10Q14728 455 aa10.16□□□□□ -0.78
RFC1-208ENST00000504849 MYT1Q01538 1121 aa10.15□□□□□ -0.78
RFC1-208ENST00000504849 DDX27Q96GQ7 796 aaKnown RBP10.14□□□□□ -0.79
RFC1-208ENST00000504849 LARP6Q9BRS8 491 aaKnown RBP10.14□□□□□ -0.79
RFC1-208ENST00000504849 TSKSQ9UJT2 592 aa10.14□□□□□ -0.79
RFC1-208ENST00000504849 NKX2-3Q8TAU0 364 aa10.13□□□□□ -0.79
RFC1-208ENST00000504849 DNAJC5Q9H3Z4 198 aa10.13□□□□□ -0.79
RFC1-208ENST00000504849 TREML4Q6UXN2 200 aa10.12□□□□□ -0.79
RFC1-208ENST00000504849 SAMD7Q7Z3H4 446 aa10.11□□□□□ -0.79
RFC1-208ENST00000504849 EMID1Q96A84 441 aaPredicted RBP10.1□□□□□ -0.79
RFC1-208ENST00000504849 EPAS1Q99814 870 aa10.1□□□□□ -0.79
RFC1-208ENST00000504849 C3orf80F5H4A9 247 aa10.06□□□□□ -0.8
RFC1-208ENST00000504849 RBM33Q96EV2 1170 aaKnown RBP10.06□□□□□ -0.8
RFC1-208ENST00000504849 SMAPO00193 183 aa10.05□□□□□ -0.8
RFC1-208ENST00000504849 APLP1P51693 650 aa10.05□□□□□ -0.8
RFC1-208ENST00000504849 DGAT1O75907 488 aa10.04□□□□□ -0.8
RFC1-208ENST00000504849 CHGAP10645 457 aaKnown RBP10.04□□□□□ -0.8
RFC1-208ENST00000504849 PACS2Q86VP3 889 aa10.04□□□□□ -0.8
RFC1-208ENST00000504849 FAM198AQ9UFP1 575 aa10.04□□□□□ -0.8
RFC1-208ENST00000504849 LOC100996750A0A140TA64 210 aa10.03□□□□□ -0.8
RFC1-208ENST00000504849 PKDCCQ504Y2 493 aa10.03□□□□□ -0.8
RFC1-208ENST00000504849 KRTAP4-6Q9BYQ5 205 aa10.03□□□□□ -0.8
RFC1-208ENST00000504849 RYDENQ9NUL5 291 aaKnown RBP10.02□□□□□ -0.81
RFC1-208ENST00000504849 TSR1Q2NL82 804 aaKnown RBP10.01□□□□□ -0.81
RFC1-208ENST00000504849 TMUB1Q9BVT8 246 aa10.01□□□□□ -0.81
RFC1-208ENST00000504849 PRR20EP86478 221 aa9.99□□□□□ -0.81
RFC1-208ENST00000504849 PRR20CP86479 221 aa9.99□□□□□ -0.81
RFC1-208ENST00000504849 PRR20DP86480 221 aa9.99□□□□□ -0.81
RFC1-208ENST00000504849 PRR20BP86481 221 aa9.99□□□□□ -0.81
RFC1-208ENST00000504849 PRR20AP86496 221 aa9.99□□□□□ -0.81
RFC1-208ENST00000504849 GGCXP38435 758 aa9.98□□□□□ -0.81
RFC1-208ENST00000504849 SLC19A1P41440 591 aa9.97□□□□□ -0.81
RFC1-208ENST00000504849 EN1Q05925 392 aaPredicted RBP9.97□□□□□ -0.81
RFC1-208ENST00000504849 ST8SIA5O15466 376 aa9.96□□□□□ -0.82
RFC1-208ENST00000504849 DDX12PQ92771 950 aa9.96□□□□□ -0.82
RFC1-208ENST00000504849 COPS2P61201 443 aa9.95□□□□□ -0.82
RFC1-208ENST00000504849 CAMK2BQ13554 666 aa9.95□□□□□ -0.82
RFC1-208ENST00000504849 SPRYD7Q5W111 196 aa9.95□□□□□ -0.82
RFC1-208ENST00000504849 CDCA7LQ96GN5 454 aa9.95□□□□□ -0.82
RFC1-208ENST00000504849 STK17AQ9UEE5 414 aa9.95□□□□□ -0.82
RFC1-208ENST00000504849 RNF223E7ERA6 249 aa9.94□□□□□ -0.82
RFC1-208ENST00000504849 DPYSL4O14531 572 aa9.94□□□□□ -0.82
RFC1-208ENST00000504849 AAASQ9NRG9 546 aa9.94□□□□□ -0.82
RFC1-208ENST00000504849 GTPBP6O43824 516 aaPredicted RBP9.93□□□□□ -0.82
RFC1-208ENST00000504849 ZNF598Q86UK7 904 aaKnown RBP9.93□□□□□ -0.82
RFC1-208ENST00000504849 TATDN2Q93075 761 aa9.93□□□□□ -0.82
RFC1-208ENST00000504849 FAM187AA6NFU0 413 aa9.92□□□□□ -0.82
RFC1-208ENST00000504849 PRSS12P56730 875 aa9.92□□□□□ -0.82
RFC1-208ENST00000504849 GDF9O60383 454 aa9.91□□□□□ -0.82
RFC1-208ENST00000504849 ZPR1O75312 459 aa9.91□□□□□ -0.82
RFC1-208ENST00000504849 MAP3K7O43318 606 aa9.9□□□□□ -0.82
RFC1-208ENST00000504849 CADPS2Q86UW7 1296 aa9.9□□□□□ -0.82
RFC1-208ENST00000504849 WIPF1O43516 503 aa9.89□□□□□ -0.83
RFC1-208ENST00000504849 RNF40O75150 1001 aa9.89□□□□□ -0.83
RFC1-208ENST00000504849 WFS1O76024 890 aa9.89□□□□□ -0.83
RFC1-208ENST00000504849 NBR1Q14596 966 aa9.89□□□□□ -0.83
RFC1-208ENST00000504849 PNMA3Q9UL41 463 aa9.89□□□□□ -0.83
RFC1-208ENST00000504849 NFX1Q12986 1120 aaKnown RBP9.88□□□□□ -0.83
RFC1-208ENST00000504849 LIAT1Q6ZQX7 453 aa9.88□□□□□ -0.83
RFC1-208ENST00000504849 NBPF26B4DH59 902 aa9.87□□□□□ -0.83
RFC1-208ENST00000504849 TNFRSF10AO00220 468 aa9.87□□□□□ -0.83
RFC1-208ENST00000504849 PRIM1P49642 420 aaKnown RBP9.87□□□□□ -0.83
RFC1-208ENST00000504849 LCE2CQ5TA81 110 aa9.87□□□□□ -0.83
RFC1-208ENST00000504849 ZNF697Q5TEC3 545 aa9.86□□□□□ -0.83
RFC1-208ENST00000504849 DACH1Q9UI36 760 aa9.86□□□□□ -0.83
RFC1-208ENST00000504849 NUDT18Q6ZVK8 323 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms