RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 AEBP2Q6ZN18 517 aaPredicted RBP27.81■■■□□ 2.04
RFC1-208ENST00000504849 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
RFC1-208ENST00000504849 SENP3Q9H4L4 574 aaPredicted RBP23.68■■□□□ 1.38
RFC1-208ENST00000504849 PHF23Q9BUL5 403 aaPredicted RBP23.31■■□□□ 1.32
RFC1-208ENST00000504849 FOXD1Q16676 465 aa22.26■■□□□ 1.15
RFC1-208ENST00000504849 POTEDQ86YR6 584 aa21.86■■□□□ 1.09
RFC1-208ENST00000504849 MSH5O43196 834 aa21■□□□□ 0.95
RFC1-208ENST00000504849 PIAS4Q8N2W9 510 aaPredicted RBP20.54■□□□□ 0.88
RFC1-208ENST00000504849 PPP6R1Q9UPN7 881 aa20.29■□□□□ 0.84
RFC1-208ENST00000504849 ADRA2BP18089 450 aa20.13■□□□□ 0.81
RFC1-208ENST00000504849 PLPPR3Q6T4P5 718 aa20.04■□□□□ 0.8
RFC1-208ENST00000504849 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
RFC1-208ENST00000504849 DMRT2Q9Y5R5 561 aa18.71■□□□□ 0.59
RFC1-208ENST00000504849 CACNB1Q02641 598 aaPredicted RBP18.46■□□□□ 0.55
RFC1-208ENST00000504849 SCAF1Q9H7N4 1312 aaKnown RBP18.24■□□□□ 0.51
RFC1-208ENST00000504849 RNF39Q9H2S5 420 aa17.94■□□□□ 0.46
RFC1-208ENST00000504849 DCAF8L1A6NGE4 600 aa17.86■□□□□ 0.45
RFC1-208ENST00000504849 HOXD11P31277 338 aaPredicted RBP17.75■□□□□ 0.43
RFC1-208ENST00000504849 C1QBPQ07021 282 aaKnown RBP17.56■□□□□ 0.4
RFC1-208ENST00000504849 PPP4R3CPQ6ZMV5 832 aa17.51■□□□□ 0.39
RFC1-208ENST00000504849 RNF216Q9NWF9 866 aaPredicted RBP17.38■□□□□ 0.37
RFC1-208ENST00000504849 CNKSR2Q8WXI2 1034 aa17.32■□□□□ 0.36
RFC1-208ENST00000504849 DNAJC5BQ9UF47 199 aa17.25■□□□□ 0.35
RFC1-208ENST00000504849 POTEHQ6S545 545 aa16.94■□□□□ 0.3
RFC1-208ENST00000504849 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.79■□□□□ 0.281e-7■■■□□ 17.2
RFC1-208ENST00000504849 DSG3P32926 999 aa16.54■□□□□ 0.24
RFC1-208ENST00000504849 NCBP3Q53F19 620 aaKnown RBP16.5■□□□□ 0.23
RFC1-208ENST00000504849 U3KPZ7 1027 aaPredicted RBP16.49■□□□□ 0.23
RFC1-208ENST00000504849 SPINK5Q9NQ38 1064 aaPredicted RBP16.47■□□□□ 0.23
RFC1-208ENST00000504849 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
RFC1-208ENST00000504849 CAPN15O75808 1086 aa16.37■□□□□ 0.21
RFC1-208ENST00000504849 ABCB7O75027 752 aa15.98■□□□□ 0.15
RFC1-208ENST00000504849 TRHP20396 242 aaPredicted RBP15.93■□□□□ 0.14
RFC1-208ENST00000504849 SLC4A2P04920 1241 aa15.91■□□□□ 0.14
RFC1-208ENST00000504849 ZNF219Q9P2Y4 722 aaPredicted RBP15.86■□□□□ 0.13
RFC1-208ENST00000504849 APLP2Q06481 763 aa15.73■□□□□ 0.11
RFC1-208ENST00000504849 CHRDL2Q6WN34 429 aa15.71■□□□□ 0.11
RFC1-208ENST00000504849 RBM42Q9BTD8 480 aaKnown RBP15.68■□□□□ 0.1
RFC1-208ENST00000504849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
RFC1-208ENST00000504849 HNRNPUL2Q1KMD3 747 aaKnown RBP15.59■□□□□ 0.09
RFC1-208ENST00000504849 SP7Q8TDD2 431 aaPredicted RBP15.53■□□□□ 0.08
RFC1-208ENST00000504849 SAMD1Q6SPF0 538 aaPredicted RBP15.5■□□□□ 0.07
RFC1-208ENST00000504849 KCNA4P22459 653 aa15.45■□□□□ 0.06
RFC1-208ENST00000504849 POLA2Q14181 598 aa15.37■□□□□ 0.05
RFC1-208ENST00000504849 PIP4P2Q8N4L2 257 aa15.21■□□□□ 0.03
RFC1-208ENST00000504849 AKT1S1Q96B36 256 aa15.21■□□□□ 0.03
RFC1-208ENST00000504849 MYCNP04198 464 aaPredicted RBP15.12■□□□□ 0.01
RFC1-208ENST00000504849 REM2Q8IYK8 340 aaPredicted RBP15.11■□□□□ 0.01
RFC1-208ENST00000504849 HAX1O00165 279 aa15.05■□□□□ -0
RFC1-208ENST00000504849 FXR2P51116 673 aaKnown RBP eCLIP15.01□□□□□ -0.014e-6■■■□□ 16.1
RFC1-208ENST00000504849 PITPNM1O00562 1244 aa14.99□□□□□ -0.01
RFC1-208ENST00000504849 EVX2Q03828 476 aa14.97□□□□□ -0.01
RFC1-208ENST00000504849 ATF5Q9Y2D1 282 aaPredicted RBP14.96□□□□□ -0.01
RFC1-208ENST00000504849 OSCARQ8IYS5 282 aa14.95□□□□□ -0.02
RFC1-208ENST00000504849 ZBTB12Q9Y330 459 aaPredicted RBP14.91□□□□□ -0.02
RFC1-208ENST00000504849 FOXD4L1Q9NU39 408 aa14.58□□□□□ -0.08
RFC1-208ENST00000504849 C19orf67A6NJJ6 358 aa14.55□□□□□ -0.08
RFC1-208ENST00000504849 PRKAR2AP13861 404 aaKnown RBP14.54□□□□□ -0.08
RFC1-208ENST00000504849 LHX8Q68G74 356 aa14.54□□□□□ -0.08
RFC1-208ENST00000504849 GABBR2O75899 941 aa14.5□□□□□ -0.09
RFC1-208ENST00000504849 SPDYE2BA6NHP3 402 aa14.45□□□□□ -0.1
RFC1-208ENST00000504849 SPDYE6P0CI01 402 aa14.45□□□□□ -0.1
RFC1-208ENST00000504849 SPDYE2Q495Y8 402 aa14.45□□□□□ -0.1
RFC1-208ENST00000504849 SPDYE1Q8NFV5 336 aaPredicted RBP14.36□□□□□ -0.11
RFC1-208ENST00000504849 CLEC11AQ9Y240 323 aa14.36□□□□□ -0.11
RFC1-208ENST00000504849 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
RFC1-208ENST00000504849 POTEIP0CG38 1075 aa14.28□□□□□ -0.12
RFC1-208ENST00000504849 ZBTB22O15209 634 aa14.26□□□□□ -0.13
RFC1-208ENST00000504849 CHADLQ6NUI6 762 aa14.25□□□□□ -0.13
RFC1-208ENST00000504849 SSUH2Q9Y2M2 353 aa14.25□□□□□ -0.13
RFC1-208ENST00000504849 FBLN2P98095 1184 aa14.23□□□□□ -0.13
RFC1-208ENST00000504849 MKRN4PQ13434 485 aaPredicted RBP14.23□□□□□ -0.13
RFC1-208ENST00000504849 ATXN8OSP0DMR3 200 aa14.18□□□□□ -0.14
RFC1-208ENST00000504849 PLSCR2Q9NRY7 297 aa14.17□□□□□ -0.14
RFC1-208ENST00000504849 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
RFC1-208ENST00000504849 CD44P16070 742 aaKnown RBP14.02□□□□□ -0.17
RFC1-208ENST00000504849 PRR29P0C7W0 189 aa14.01□□□□□ -0.17
RFC1-208ENST00000504849 PABPN1Q86U42 306 aaKnown RBP eCLIP13.94□□□□□ -0.18
RFC1-208ENST00000504849 FARP1Q9Y4F1 1045 aaPredicted RBP13.94□□□□□ -0.18
RFC1-208ENST00000504849 CLCN6P51797 869 aa13.91□□□□□ -0.18
RFC1-208ENST00000504849 OTUD5Q96G74 571 aa13.85□□□□□ -0.19
RFC1-208ENST00000504849 DCBLD2Q96PD2 775 aa13.85□□□□□ -0.19
RFC1-208ENST00000504849 ZNF579Q8NAF0 562 aaKnown RBP13.82□□□□□ -0.2
RFC1-208ENST00000504849 POTEB2H3BUK9 544 aa13.79□□□□□ -0.2
RFC1-208ENST00000504849 POTEMA6NI47 508 aa13.73□□□□□ -0.21
RFC1-208ENST00000504849 GALR2O43603 387 aaPredicted RBP13.72□□□□□ -0.21
RFC1-208ENST00000504849 ZRANB1Q9UGI0 708 aa13.7□□□□□ -0.22
RFC1-208ENST00000504849 POTEGQ6S5H5 508 aa13.67□□□□□ -0.22
RFC1-208ENST00000504849 CREBZFQ9NS37 354 aa13.61□□□□□ -0.23
RFC1-208ENST00000504849 PELP1Q8IZL8 1130 aaKnown RBP13.57□□□□□ -0.24
RFC1-208ENST00000504849 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
RFC1-208ENST00000504849 POTEJP0CG39 1038 aa13.49□□□□□ -0.25
RFC1-208ENST00000504849 LCE2DQ5TA82 110 aaPredicted RBP13.49□□□□□ -0.25
RFC1-208ENST00000504849 PCDH10Q9P2E7 1040 aa13.47□□□□□ -0.25
RFC1-208ENST00000504849 ASTLQ6HA08 431 aaPredicted RBP13.38□□□□□ -0.27
RFC1-208ENST00000504849 METRNQ9UJH8 293 aa13.38□□□□□ -0.27
RFC1-208ENST00000504849 PAK3O75914 559 aaPredicted RBP13.33□□□□□ -0.28
RFC1-208ENST00000504849 MNX1P50219 401 aaPredicted RBP13.33□□□□□ -0.28
RFC1-208ENST00000504849 ATMINO43313 823 aaPredicted RBP13.32□□□□□ -0.28
RFC1-208ENST00000504849 STAG3Q9UJ98 1225 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms