RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 KCNK17Q96T54 332 aa13.29□□□□□ -0.28
CCDC39-207ENST00000495817 PPP1R3GB7ZBB8 358 aa13.27□□□□□ -0.29
CCDC39-207ENST00000495817 C6orf132Q5T0Z8 1188 aa13.27□□□□□ -0.29
CCDC39-207ENST00000495817 POTEEQ6S8J3 1075 aa13.27□□□□□ -0.29
CCDC39-207ENST00000495817 RBM33Q96EV2 1170 aaKnown RBP13.27□□□□□ -0.29
CCDC39-207ENST00000495817 KRTAP3-3Q9BYR6 98 aa13.26□□□□□ -0.29
CCDC39-207ENST00000495817 KRTAP3-2Q9BYR7 98 aa13.26□□□□□ -0.29
CCDC39-207ENST00000495817 LSM11P83369 360 aaKnown RBP eCLIP13.25□□□□□ -0.29
CCDC39-207ENST00000495817 CERKQ8TCT0 537 aa13.25□□□□□ -0.29
CCDC39-207ENST00000495817 PRIM1P49642 420 aaKnown RBP13.24□□□□□ -0.29
CCDC39-207ENST00000495817 SLC4A5Q9BY07 1137 aa13.23□□□□□ -0.29
CCDC39-207ENST00000495817 AXIN2Q9Y2T1 843 aa13.23□□□□□ -0.29
CCDC39-207ENST00000495817 PSEN2P49810 448 aa13.22□□□□□ -0.29
CCDC39-207ENST00000495817 TSR1Q2NL82 804 aaKnown RBP13.22□□□□□ -0.29
CCDC39-207ENST00000495817 TK2O00142 265 aa13.21□□□□□ -0.29
CCDC39-207ENST00000495817 DMRTA1Q5VZB9 504 aa13.18□□□□□ -0.3
CCDC39-207ENST00000495817 COL9A1P20849 921 aa13.17□□□□□ -0.3
CCDC39-207ENST00000495817 ZBED2Q9BTP6 218 aa13.17□□□□□ -0.3
CCDC39-207ENST00000495817 RBM27Q9P2N5 1060 aaKnown RBP13.17□□□□□ -0.3
CCDC39-207ENST00000495817 RBM26Q5T8P6 1007 aaKnown RBP13.16□□□□□ -0.3
CCDC39-207ENST00000495817 CDHR5Q9HBB8 845 aa13.16□□□□□ -0.3
CCDC39-207ENST00000495817 NUTM2FA1L443 756 aa13.15□□□□□ -0.3
CCDC39-207ENST00000495817 ONECUT3O60422 494 aaPredicted RBP13.14□□□□□ -0.31
CCDC39-207ENST00000495817 ADGRD1Q6QNK2 874 aa13.14□□□□□ -0.31
CCDC39-207ENST00000495817 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
CCDC39-207ENST00000495817 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC39-207ENST00000495817 FCHSD2O94868 740 aa13.13□□□□□ -0.31
CCDC39-207ENST00000495817 PTGDRQ13258 359 aa13.13□□□□□ -0.31
CCDC39-207ENST00000495817 VPS9D1Q9Y2B5 631 aa13.13□□□□□ -0.31
CCDC39-207ENST00000495817 GPIHBP1Q8IV16 184 aa13.12□□□□□ -0.31
CCDC39-207ENST00000495817 NPDC1Q9NQX5 325 aaPredicted RBP13.12□□□□□ -0.31
CCDC39-207ENST00000495817 PRSS12P56730 875 aa13.11□□□□□ -0.31
CCDC39-207ENST00000495817 LMOD2Q6P5Q4 547 aa13.11□□□□□ -0.31
CCDC39-207ENST00000495817 TRIM6-TRIM34B2RNG4 842 aa13.1□□□□□ -0.31
CCDC39-207ENST00000495817 CDCA7LQ96GN5 454 aa13.09□□□□□ -0.31
CCDC39-207ENST00000495817 HIC1Q14526 733 aa13.08□□□□□ -0.32
CCDC39-207ENST00000495817 RABGEF1Q9UJ41 708 aa13.08□□□□□ -0.32
CCDC39-207ENST00000495817 PROX2Q3B8N5 592 aa13.07□□□□□ -0.32
CCDC39-207ENST00000495817 NBPF3Q9H094 633 aa13.07□□□□□ -0.32
CCDC39-207ENST00000495817 GPR37O15354 613 aa13.06□□□□□ -0.32
CCDC39-207ENST00000495817 HRO43593 1189 aa13.06□□□□□ -0.32
CCDC39-207ENST00000495817 PRKCSHP14314 528 aaPredicted RBP13.05□□□□□ -0.32
CCDC39-207ENST00000495817 PACS2Q86VP3 889 aa13.05□□□□□ -0.32
CCDC39-207ENST00000495817 TTC13Q8NBP0 860 aa13.05□□□□□ -0.32
CCDC39-207ENST00000495817 TSKSQ9UJT2 592 aa13.03□□□□□ -0.32
CCDC39-207ENST00000495817 NBPF26B4DH59 902 aa13.02□□□□□ -0.33
CCDC39-207ENST00000495817 BHMG1C9JSJ3 638 aaPredicted RBP13.02□□□□□ -0.33
CCDC39-207ENST00000495817 GNPATO15228 680 aa13.02□□□□□ -0.33
CCDC39-207ENST00000495817 PADI6Q6TGC4 694 aa13.02□□□□□ -0.33
CCDC39-207ENST00000495817 SPNS2Q8IVW8 549 aa13.01□□□□□ -0.33
CCDC39-207ENST00000495817 STAC3Q96MF2 364 aa13.01□□□□□ -0.33
CCDC39-207ENST00000495817 KIAA1468Q9P260 1216 aa13.01□□□□□ -0.33
CCDC39-207ENST00000495817 TPRNQ4KMQ1 711 aa13□□□□□ -0.33
CCDC39-207ENST00000495817 LAPTM4BQ86VI4 370 aa13□□□□□ -0.33
CCDC39-207ENST00000495817 MRPL50Q8N5N7 158 aaKnown RBP12.99□□□□□ -0.33
CCDC39-207ENST00000495817 FAM198AQ9UFP1 575 aa12.97□□□□□ -0.33
CCDC39-207ENST00000495817 MYT1LQ9UL68 1186 aa12.95□□□□□ -0.34
CCDC39-207ENST00000495817 FAM98CQ17RN3 349 aaKnown RBP12.94□□□□□ -0.34
CCDC39-207ENST00000495817 TATDN2Q93075 761 aa12.94□□□□□ -0.34
CCDC39-207ENST00000495817 ZC3H15Q8WU90 426 aaKnown RBP12.93□□□□□ -0.34
CCDC39-207ENST00000495817 MAP2K5Q13163 448 aa12.92□□□□□ -0.34
CCDC39-207ENST00000495817 PNMA3Q9UL41 463 aa12.92□□□□□ -0.34
CCDC39-207ENST00000495817 ADGRG1Q9Y653 693 aa12.92□□□□□ -0.34
CCDC39-207ENST00000495817 NUDT18Q6ZVK8 323 aa12.91□□□□□ -0.34
CCDC39-207ENST00000495817 RBM46Q8TBY0 533 aaKnown RBP12.91□□□□□ -0.34
CCDC39-207ENST00000495817 GOLGA8CPA6NN73 597 aa12.9□□□□□ -0.34
CCDC39-207ENST00000495817 ZMYND10O75800 440 aa12.9□□□□□ -0.34
CCDC39-207ENST00000495817 OATP04181 439 aa12.9□□□□□ -0.34
CCDC39-207ENST00000495817 SEPT9Q9UHD8 586 aaPredicted RBP12.9□□□□□ -0.34
CCDC39-207ENST00000495817 FECHP22830 423 aa12.88□□□□□ -0.35
CCDC39-207ENST00000495817 MMRN1Q13201 1228 aa12.88□□□□□ -0.35
CCDC39-207ENST00000495817 RNF166Q96A37 237 aaPredicted RBP12.88□□□□□ -0.35
CCDC39-207ENST00000495817 MINK1Q8N4C8 1332 aaPredicted RBP12.88□□□□□ -0.35
CCDC39-207ENST00000495817 BARGINQ6ZT62 677 aa12.87□□□□□ -0.35
CCDC39-207ENST00000495817 EYA1Q99502 592 aa12.87□□□□□ -0.35
CCDC39-207ENST00000495817 C3orf80F5H4A9 247 aa12.86□□□□□ -0.35
CCDC39-207ENST00000495817 ANKK1Q8NFD2 765 aa12.86□□□□□ -0.35
CCDC39-207ENST00000495817 ZFRQ96KR1 1074 aaKnown RBP12.86□□□□□ -0.35
CCDC39-207ENST00000495817 SMAPO00193 183 aa12.85□□□□□ -0.35
CCDC39-207ENST00000495817 METTL3Q86U44 580 aaKnown RBP12.84□□□□□ -0.35
CCDC39-207ENST00000495817 PXYLP1Q8TE99 480 aa12.84□□□□□ -0.35
CCDC39-207ENST00000495817 WNT2BQ93097 391 aa12.84□□□□□ -0.35
CCDC39-207ENST00000495817 IRF6O14896 467 aa12.83□□□□□ -0.36
CCDC39-207ENST00000495817 DNAJB2P25686 324 aa12.83□□□□□ -0.36
CCDC39-207ENST00000495817 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.82□□□□□ -0.36
CCDC39-207ENST00000495817 HDGFP51858 240 aaKnown RBP12.8□□□□□ -0.36
CCDC39-207ENST00000495817 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
CCDC39-207ENST00000495817 CCDC102AQ96A19 550 aa12.8□□□□□ -0.36
CCDC39-207ENST00000495817 KCTD12Q96CX2 325 aaKnown RBP12.8□□□□□ -0.36
CCDC39-207ENST00000495817 LRCH3Q96II8 777 aa12.8□□□□□ -0.36
CCDC39-207ENST00000495817 RCCD1A6NED2 376 aa12.78□□□□□ -0.36
CCDC39-207ENST00000495817 SOWAHBA6NEL2 793 aa12.78□□□□□ -0.36
CCDC39-207ENST00000495817 SLC4A3P48751 1232 aa12.78□□□□□ -0.36
CCDC39-207ENST00000495817 THSD4Q6ZMP0 1018 aa12.78□□□□□ -0.36
CCDC39-207ENST00000495817 KRI1Q8N9T8 703 aaKnown RBP12.78□□□□□ -0.36
CCDC39-207ENST00000495817 TMEM134Q9H6X4 195 aa12.78□□□□□ -0.36
CCDC39-207ENST00000495817 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.78□□□□□ -0.36
CCDC39-207ENST00000495817 SAMD7Q7Z3H4 446 aa12.77□□□□□ -0.37
CCDC39-207ENST00000495817 NECTIN2Q92692 538 aa12.76□□□□□ -0.37
CCDC39-207ENST00000495817 PLSCR2Q9NRY7 297 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms