RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 CARMIL1Q5VZK9 1371 aa13.76□□□□□ -0.21
RIF1-211ENST00000494333 KIF3CO14782 793 aa13.76□□□□□ -0.21
RIF1-211ENST00000494333 MFSD10Q14728 455 aa13.76□□□□□ -0.21
RIF1-211ENST00000494333 DDX27Q96GQ7 796 aaKnown RBP13.75□□□□□ -0.21
RIF1-211ENST00000494333 MAMSTRQ6ZN01 415 aa13.73□□□□□ -0.21
RIF1-211ENST00000494333 SHROOM2Q13796 1616 aa13.72□□□□□ -0.21
RIF1-211ENST00000494333 DSG2Q14126 1118 aa13.72□□□□□ -0.21
RIF1-211ENST00000494333 SCUBE2Q9NQ36 999 aa13.72□□□□□ -0.21
RIF1-211ENST00000494333 KIAA0586Q9BVV6 1533 aa13.71□□□□□ -0.21
RIF1-211ENST00000494333 LHX8Q68G74 356 aa13.71□□□□□ -0.21
RIF1-211ENST00000494333 FOXK1P85037 733 aa13.7□□□□□ -0.22
RIF1-211ENST00000494333 PPP1R15BQ5SWA1 713 aa13.7□□□□□ -0.22
RIF1-211ENST00000494333 CUL7Q14999 1698 aa13.69□□□□□ -0.22
RIF1-211ENST00000494333 RUSC2Q8N2Y8 1516 aa13.68□□□□□ -0.22
RIF1-211ENST00000494333 PLPP6Q8IY26 295 aa13.66□□□□□ -0.22
RIF1-211ENST00000494333 E2F4Q16254 413 aa13.65□□□□□ -0.22
RIF1-211ENST00000494333 SLAIN1Q8ND83 568 aa13.65□□□□□ -0.22
RIF1-211ENST00000494333 TTBK1Q5TCY1 1321 aaPredicted RBP13.64□□□□□ -0.23
RIF1-211ENST00000494333 OTUD5Q96G74 571 aa13.64□□□□□ -0.23
RIF1-211ENST00000494333 RAPGEF2Q9Y4G8 1499 aa13.62□□□□□ -0.23
RIF1-211ENST00000494333 KCNV2Q8TDN2 545 aa13.62□□□□□ -0.23
RIF1-211ENST00000494333 CAMK2BQ13554 666 aa13.61□□□□□ -0.23
RIF1-211ENST00000494333 PTPRGP23470 1445 aa13.59□□□□□ -0.23
RIF1-211ENST00000494333 CARMIL2Q6F5E8 1435 aa13.59□□□□□ -0.23
RIF1-211ENST00000494333 P3H3Q8IVL6 736 aa13.59□□□□□ -0.23
RIF1-211ENST00000494333 TNIKQ9UKE5 1360 aa13.57□□□□□ -0.24
RIF1-211ENST00000494333 IQGAP2Q13576 1575 aa13.55□□□□□ -0.24
RIF1-211ENST00000494333 EMILIN3Q9NT22 766 aa13.55□□□□□ -0.24
RIF1-211ENST00000494333 FAM69CQ0P6D2 419 aa13.54□□□□□ -0.24
RIF1-211ENST00000494333 ARHGEF1Q92888 912 aaKnown RBP13.52□□□□□ -0.25
RIF1-211ENST00000494333 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
RIF1-211ENST00000494333 ADCY10Q96PN6 1610 aa13.5□□□□□ -0.25
RIF1-211ENST00000494333 DISP1Q96F81 1524 aa13.5□□□□□ -0.25
RIF1-211ENST00000494333 FAM9AQ8IZU1 332 aaPredicted RBP13.49□□□□□ -0.25
RIF1-211ENST00000494333 UGGT2Q9NYU1 1516 aa13.49□□□□□ -0.25
RIF1-211ENST00000494333 SLC34A2O95436 690 aa13.48□□□□□ -0.25
RIF1-211ENST00000494333 HOXB3P14651 431 aaPredicted RBP13.48□□□□□ -0.25
RIF1-211ENST00000494333 OXER1Q8TDS5 423 aa13.48□□□□□ -0.25
RIF1-211ENST00000494333 UPF1Q92900 1129 aaKnown RBP eCLIP13.48□□□□□ -0.25
RIF1-211ENST00000494333 ARIH1Q9Y4X5 557 aaPredicted RBP13.48□□□□□ -0.25
RIF1-211ENST00000494333 ABCC10Q5T3U5 1492 aa13.48□□□□□ -0.25
RIF1-211ENST00000494333 PTCD2Q8WV60 388 aaKnown RBP13.47□□□□□ -0.25
RIF1-211ENST00000494333 MAPKBP1O60336 1514 aa13.47□□□□□ -0.25
RIF1-211ENST00000494333 UACAQ9BZF9 1416 aa13.47□□□□□ -0.25
RIF1-211ENST00000494333 DPYSL4O14531 572 aa13.46□□□□□ -0.25
RIF1-211ENST00000494333 ABCC2Q92887 1545 aa13.44□□□□□ -0.26
RIF1-211ENST00000494333 DOK7Q18PE1 504 aa13.44□□□□□ -0.26
RIF1-211ENST00000494333 UHRF1BP1LA0JNW5 1464 aa13.43□□□□□ -0.26
RIF1-211ENST00000494333 MAP3K9P80192 1104 aa13.43□□□□□ -0.26
RIF1-211ENST00000494333 BCANQ96GW7 911 aa13.43□□□□□ -0.26
RIF1-211ENST00000494333 SNPHO15079 494 aa13.42□□□□□ -0.26
RIF1-211ENST00000494333 KIAA0556O60303 1618 aa13.42□□□□□ -0.26
RIF1-211ENST00000494333 GOLGA3Q08378 1498 aa13.42□□□□□ -0.26
RIF1-211ENST00000494333 EEA1Q15075 1411 aa13.41□□□□□ -0.26
RIF1-211ENST00000494333 NBR1Q14596 966 aa13.41□□□□□ -0.26
RIF1-211ENST00000494333 ASXL2Q76L83 1435 aa13.4□□□□□ -0.26
RIF1-211ENST00000494333 TBC1D12O60347 775 aa13.4□□□□□ -0.26
RIF1-211ENST00000494333 PCDHGA4Q9Y5G9 962 aa13.4□□□□□ -0.26
RIF1-211ENST00000494333 KIF13AQ9H1H9 1805 aa13.4□□□□□ -0.26
RIF1-211ENST00000494333 RANGAP1P46060 587 aaPredicted RBP13.39□□□□□ -0.27
RIF1-211ENST00000494333 PLB1Q6P1J6 1458 aa13.39□□□□□ -0.27
RIF1-211ENST00000494333 DIP2BQ9P265 1576 aa13.39□□□□□ -0.27
RIF1-211ENST00000494333 KDM5BQ9UGL1 1544 aa13.38□□□□□ -0.27
RIF1-211ENST00000494333 CTTNBP2Q8WZ74 1663 aa13.37□□□□□ -0.27
RIF1-211ENST00000494333 RIMBP2O15034 1052 aa13.37□□□□□ -0.27
RIF1-211ENST00000494333 PDIA6Q15084 440 aa13.37□□□□□ -0.27
RIF1-211ENST00000494333 ZNF710Q8N1W2 664 aa13.37□□□□□ -0.27
RIF1-211ENST00000494333 SPDYE16A6NNV3 312 aaPredicted RBP13.36□□□□□ -0.27
RIF1-211ENST00000494333 ZSWIM6Q9HCJ5 1215 aa13.35□□□□□ -0.27
RIF1-211ENST00000494333 SEMA3EO15041 775 aa13.34□□□□□ -0.27
RIF1-211ENST00000494333 EVI5O60447 810 aa13.34□□□□□ -0.27
RIF1-211ENST00000494333 ARSIQ5FYB1 569 aa13.34□□□□□ -0.27
RIF1-211ENST00000494333 GPR153Q6NV75 609 aa13.34□□□□□ -0.27
RIF1-211ENST00000494333 KHSRPQ92945 711 aaKnown RBP eCLIP13.34□□□□□ -0.272e-6■■■□□ 15.6
RIF1-211ENST00000494333 ARID3CA6NKF2 412 aa13.33□□□□□ -0.28
RIF1-211ENST00000494333 KCNH8Q96L42 1107 aa13.33□□□□□ -0.28
RIF1-211ENST00000494333 UBTFP17480 764 aaKnown RBP13.31□□□□□ -0.28
RIF1-211ENST00000494333 EPRSP07814 1512 aaKnown RBP13.3□□□□□ -0.28
RIF1-211ENST00000494333 KDM4FA0A1W2PPD8 638 aa13.3□□□□□ -0.28
RIF1-211ENST00000494333 ABCA8O94911 1581 aa13.29□□□□□ -0.28
RIF1-211ENST00000494333 ZCCHC11Q5TAX3 1644 aaKnown RBP13.29□□□□□ -0.28
RIF1-211ENST00000494333 NUDT7P0C024 238 aa13.29□□□□□ -0.28
RIF1-211ENST00000494333 ANO8Q9HCE9 1232 aaPredicted RBP13.29□□□□□ -0.28
RIF1-211ENST00000494333 GLI2P10070 1586 aa13.28□□□□□ -0.28
RIF1-211ENST00000494333 TSPOAP1O95153 1857 aa13.28□□□□□ -0.28
RIF1-211ENST00000494333 WDR7Q9Y4E6 1490 aa13.28□□□□□ -0.28
RIF1-211ENST00000494333 TESPA1A2RU30 521 aaPredicted RBP13.27□□□□□ -0.29
RIF1-211ENST00000494333 HOXB1P14653 301 aaPredicted RBP13.27□□□□□ -0.29
RIF1-211ENST00000494333 ZNF316A6NFI3 1004 aaPredicted RBP13.26□□□□□ -0.29
RIF1-211ENST00000494333 MLLT3P42568 568 aaPredicted RBP13.26□□□□□ -0.29
RIF1-211ENST00000494333 KDM6BO15054 1643 aa13.25□□□□□ -0.29
RIF1-211ENST00000494333 ATP10BO94823 1461 aa13.25□□□□□ -0.29
RIF1-211ENST00000494333 FHOD3Q2V2M9 1422 aa13.24□□□□□ -0.29
RIF1-211ENST00000494333 ST18O60284 1047 aa13.24□□□□□ -0.29
RIF1-211ENST00000494333 PTGER2P43116 358 aa13.24□□□□□ -0.29
RIF1-211ENST00000494333 FAM163AQ96GL9 167 aaPredicted RBP13.24□□□□□ -0.29
RIF1-211ENST00000494333 KIF21BO75037 1637 aa13.24□□□□□ -0.29
RIF1-211ENST00000494333 SAMD9Q5K651 1589 aa13.24□□□□□ -0.29
RIF1-211ENST00000494333 CD109Q6YHK3 1445 aa13.22□□□□□ -0.29
RIF1-211ENST00000494333 DDX12PQ92771 950 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms