RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 PHF14O94880 888 aa12.79□□□□□ -0.36
SMC4-223ENST00000493695 PPP1R3GB7ZBB8 358 aa12.78□□□□□ -0.36
SMC4-223ENST00000493695 RBM33Q96EV2 1170 aaKnown RBP12.78□□□□□ -0.36
SMC4-223ENST00000493695 BHMG1C9JSJ3 638 aaPredicted RBP12.77□□□□□ -0.37
SMC4-223ENST00000493695 PROX2Q3B8N5 592 aa12.77□□□□□ -0.37
SMC4-223ENST00000493695 DDX12PQ92771 950 aa12.77□□□□□ -0.37
SMC4-223ENST00000493695 CAMK2BQ13554 666 aa12.76□□□□□ -0.37
SMC4-223ENST00000493695 COL9A1P20849 921 aa12.75□□□□□ -0.37
SMC4-223ENST00000493695 WDR70Q9NW82 654 aa12.75□□□□□ -0.37
SMC4-223ENST00000493695 THSD4Q6ZMP0 1018 aa12.74□□□□□ -0.37
SMC4-223ENST00000493695 EPAS1Q99814 870 aa12.73□□□□□ -0.37
SMC4-223ENST00000493695 RABGEF1Q9UJ41 708 aa12.71□□□□□ -0.37
SMC4-223ENST00000493695 C6orf132Q5T0Z8 1188 aa12.7□□□□□ -0.38
SMC4-223ENST00000493695 NBR1Q14596 966 aa12.69□□□□□ -0.38
SMC4-223ENST00000493695 ANKK1Q8NFD2 765 aa12.69□□□□□ -0.38
SMC4-223ENST00000493695 KIAA1468Q9P260 1216 aa12.68□□□□□ -0.38
SMC4-223ENST00000493695 MAP3K7O43318 606 aa12.66□□□□□ -0.38
SMC4-223ENST00000493695 E2F4Q16254 413 aa12.66□□□□□ -0.38
SMC4-223ENST00000493695 SEPT9Q9UHD8 586 aaPredicted RBP12.64□□□□□ -0.39
SMC4-223ENST00000493695 GRXCR2A6NFK2 248 aa12.62□□□□□ -0.39
SMC4-223ENST00000493695 BCAMP50895 628 aa12.62□□□□□ -0.39
SMC4-223ENST00000493695 SPDYE16A6NNV3 312 aaPredicted RBP12.61□□□□□ -0.39
SMC4-223ENST00000493695 PDIA6Q15084 440 aa12.61□□□□□ -0.39
SMC4-223ENST00000493695 TSR1Q2NL82 804 aaKnown RBP12.6□□□□□ -0.39
SMC4-223ENST00000493695 ZFRQ96KR1 1074 aaKnown RBP12.6□□□□□ -0.39
SMC4-223ENST00000493695 TRIM6-TRIM34B2RNG4 842 aa12.59□□□□□ -0.39
SMC4-223ENST00000493695 EN1Q05925 392 aaPredicted RBP12.59□□□□□ -0.39
SMC4-223ENST00000493695 LAPTM4BQ86VI4 370 aa12.59□□□□□ -0.39
SMC4-223ENST00000493695 PACS2Q86VP3 889 aa12.56□□□□□ -0.4
SMC4-223ENST00000493695 ONECUT3O60422 494 aaPredicted RBP12.55□□□□□ -0.4
SMC4-223ENST00000493695 SOWAHBA6NEL2 793 aa12.54□□□□□ -0.4
SMC4-223ENST00000493695 FAM98CQ17RN3 349 aaKnown RBP12.53□□□□□ -0.4
SMC4-223ENST00000493695 LRCH3Q96II8 777 aa12.52□□□□□ -0.41
SMC4-223ENST00000493695 WBP1LQ9NX94 342 aa12.51□□□□□ -0.41
SMC4-223ENST00000493695 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.51□□□□□ -0.41
SMC4-223ENST00000493695 TSKSQ9UJT2 592 aa12.5□□□□□ -0.41
SMC4-223ENST00000493695 CDCA7LQ96GN5 454 aa12.49□□□□□ -0.41
SMC4-223ENST00000493695 HPS5Q9UPZ3 1129 aa12.49□□□□□ -0.41
SMC4-223ENST00000493695 SMAPO00193 183 aa12.48□□□□□ -0.41
SMC4-223ENST00000493695 PRSS12P56730 875 aa12.46□□□□□ -0.41
SMC4-223ENST00000493695 A0A0G2JS52 829 aa12.45□□□□□ -0.42
SMC4-223ENST00000493695 IFFO2Q5TF58 517 aa12.45□□□□□ -0.42
SMC4-223ENST00000493695 NYAP1Q6ZVC0 841 aa12.45□□□□□ -0.42
SMC4-223ENST00000493695 CERKQ8TCT0 537 aa12.45□□□□□ -0.42
SMC4-223ENST00000493695 TSR3Q9UJK0 312 aaKnown RBP12.45□□□□□ -0.42
SMC4-223ENST00000493695 RNF40O75150 1001 aa12.44□□□□□ -0.42
SMC4-223ENST00000493695 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
SMC4-223ENST00000493695 PPP4CP60510 307 aa12.43□□□□□ -0.42
SMC4-223ENST00000493695 CDHR5Q9HBB8 845 aa12.43□□□□□ -0.42
SMC4-223ENST00000493695 PNMA3Q9UL41 463 aa12.43□□□□□ -0.42
SMC4-223ENST00000493695 ARIH1Q9Y4X5 557 aaPredicted RBP12.43□□□□□ -0.42
SMC4-223ENST00000493695 TSHZ2Q9NRE2 1034 aa12.42□□□□□ -0.42
SMC4-223ENST00000493695 NBPF26B4DH59 902 aa12.41□□□□□ -0.42
SMC4-223ENST00000493695 OSBPP22059 807 aa12.41□□□□□ -0.42
SMC4-223ENST00000493695 HDGFP51858 240 aaKnown RBP12.4□□□□□ -0.42
SMC4-223ENST00000493695 KCNC4Q03721 635 aa12.4□□□□□ -0.42
SMC4-223ENST00000493695 SAMD7Q7Z3H4 446 aa12.4□□□□□ -0.42
SMC4-223ENST00000493695 TATDN2Q93075 761 aa12.4□□□□□ -0.42
SMC4-223ENST00000493695 ITGBL1O95965 494 aaPredicted RBP12.38□□□□□ -0.43
SMC4-223ENST00000493695 NUDT18Q6ZVK8 323 aa12.37□□□□□ -0.43
SMC4-223ENST00000493695 FAM198AQ9UFP1 575 aa12.37□□□□□ -0.43
SMC4-223ENST00000493695 RGS20O76081 388 aa12.36□□□□□ -0.43
SMC4-223ENST00000493695 IRX2Q9BZI1 471 aaPredicted RBP12.35□□□□□ -0.43
SMC4-223ENST00000493695 C3orf80F5H4A9 247 aa12.33□□□□□ -0.44
SMC4-223ENST00000493695 PADI6Q6TGC4 694 aa12.32□□□□□ -0.44
SMC4-223ENST00000493695 ARHGEF1Q92888 912 aaKnown RBP12.31□□□□□ -0.44
SMC4-223ENST00000493695 KCNV2Q8TDN2 545 aa12.3□□□□□ -0.44
SMC4-223ENST00000493695 MLLT3P42568 568 aaPredicted RBP12.29□□□□□ -0.44
SMC4-223ENST00000493695 RBM27Q9P2N5 1060 aaKnown RBP12.27□□□□□ -0.45
SMC4-223ENST00000493695 SLC4A3P48751 1232 aa12.26□□□□□ -0.45
SMC4-223ENST00000493695 SWT1Q5T5J6 900 aaKnown RBP12.24□□□□□ -0.45
SMC4-223ENST00000493695 NPDC1Q9NQX5 325 aaPredicted RBP12.24□□□□□ -0.45
SMC4-223ENST00000493695 NUTM2FA1L443 756 aa12.23□□□□□ -0.45
SMC4-223ENST00000493695 MTRQ99707 1265 aa12.23□□□□□ -0.45
SMC4-223ENST00000493695 SLF2Q8IX21 1173 aa12.21□□□□□ -0.45
SMC4-223ENST00000493695 TJAP1Q5JTD0 557 aa12.2□□□□□ -0.46
SMC4-223ENST00000493695 P3H3Q8IVL6 736 aa12.2□□□□□ -0.46
SMC4-223ENST00000493695 NECTIN2Q92692 538 aa12.2□□□□□ -0.46
SMC4-223ENST00000493695 IL21Q9HBE4 155 aa12.2□□□□□ -0.46
SMC4-223ENST00000493695 APLP1P51693 650 aa12.19□□□□□ -0.46
SMC4-223ENST00000493695 COPS2P61201 443 aa12.17□□□□□ -0.46
SMC4-223ENST00000493695 TTC13Q8NBP0 860 aa12.17□□□□□ -0.46
SMC4-223ENST00000493695 ZNF516Q92618 1163 aa12.16□□□□□ -0.46
SMC4-223ENST00000493695 Q6ZNB5 142 aa12.15□□□□□ -0.46
SMC4-223ENST00000493695 PTGDRQ13258 359 aa12.14□□□□□ -0.47
SMC4-223ENST00000493695 SEMA3EO15041 775 aa12.13□□□□□ -0.47
SMC4-223ENST00000493695 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
SMC4-223ENST00000493695 EYA1Q99502 592 aa12.13□□□□□ -0.47
SMC4-223ENST00000493695 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
SMC4-223ENST00000493695 FAM161AQ3B820 660 aa12.11□□□□□ -0.47
SMC4-223ENST00000493695 PRKD2Q9BZL6 878 aa12.11□□□□□ -0.47
SMC4-223ENST00000493695 DNAJB2P25686 324 aa12.1□□□□□ -0.47
SMC4-223ENST00000493695 NKX2-3Q8TAU0 364 aa12.1□□□□□ -0.47
SMC4-223ENST00000493695 FCHSD2O94868 740 aa12.08□□□□□ -0.48
SMC4-223ENST00000493695 PRR14Q9BWN1 585 aa12.08□□□□□ -0.48
SMC4-223ENST00000493695 PCDHB3Q9Y5E6 796 aa12.08□□□□□ -0.48
SMC4-223ENST00000493695 GGCXP38435 758 aa12.07□□□□□ -0.48
SMC4-223ENST00000493695 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.07□□□□□ -0.48
SMC4-223ENST00000493695 PLCB2Q00722 1185 aa12.06□□□□□ -0.48
SMC4-223ENST00000493695 ADGRG1Q9Y653 693 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms