RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 KCTD12Q96CX2 325 aaKnown RBP9.29□□□□□ -0.92
PTCD3-218ENST00000493430 SPDYE16A6NNV3 312 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-218ENST00000493430 GOLGA8CPA6NN73 597 aa9.26□□□□□ -0.93
PTCD3-218ENST00000493430 PDIA6Q15084 440 aa9.26□□□□□ -0.93
PTCD3-218ENST00000493430 MRPL50Q8N5N7 158 aaKnown RBP9.26□□□□□ -0.93
PTCD3-218ENST00000493430 DDX12PQ92771 950 aa9.26□□□□□ -0.93
PTCD3-218ENST00000493430 NBPF3Q9H094 633 aa9.26□□□□□ -0.93
PTCD3-218ENST00000493430 COL9A1P20849 921 aa9.25□□□□□ -0.93
PTCD3-218ENST00000493430 C6orf132Q5T0Z8 1188 aa9.25□□□□□ -0.93
PTCD3-218ENST00000493430 ARIH1Q9Y4X5 557 aaPredicted RBP9.24□□□□□ -0.93
PTCD3-218ENST00000493430 RBM33Q96EV2 1170 aaKnown RBP9.23□□□□□ -0.93
PTCD3-218ENST00000493430 RABGEF1Q9UJ41 708 aa9.23□□□□□ -0.93
PTCD3-218ENST00000493430 PROX2Q3B8N5 592 aa9.22□□□□□ -0.93
PTCD3-218ENST00000493430 NBR1Q14596 966 aa9.21□□□□□ -0.94
PTCD3-218ENST00000493430 WNT2BQ93097 391 aa9.21□□□□□ -0.94
PTCD3-218ENST00000493430 PLA2G2EQ9NZK7 142 aa9.21□□□□□ -0.94
PTCD3-218ENST00000493430 PTPN5P54829 565 aa9.2□□□□□ -0.94
PTCD3-218ENST00000493430 ONECUT3O60422 494 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-218ENST00000493430 EN1Q05925 392 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-218ENST00000493430 TSHZ2Q9NRE2 1034 aa9.19□□□□□ -0.94
PTCD3-218ENST00000493430 MAP3K7O43318 606 aa9.18□□□□□ -0.94
PTCD3-218ENST00000493430 THSD4Q6ZMP0 1018 aa9.18□□□□□ -0.94
PTCD3-218ENST00000493430 KIAA1468Q9P260 1216 aa9.18□□□□□ -0.94
PTCD3-218ENST00000493430 GRXCR2A6NFK2 248 aa9.16□□□□□ -0.94
PTCD3-218ENST00000493430 LAPTM4BQ86VI4 370 aa9.16□□□□□ -0.94
PTCD3-218ENST00000493430 TRIM6-TRIM34B2RNG4 842 aa9.15□□□□□ -0.94
PTCD3-218ENST00000493430 TSR1Q2NL82 804 aaKnown RBP9.15□□□□□ -0.94
PTCD3-218ENST00000493430 ANKK1Q8NFD2 765 aa9.14□□□□□ -0.95
PTCD3-218ENST00000493430 PACS2Q86VP3 889 aa9.12□□□□□ -0.95
PTCD3-218ENST00000493430 CERKQ8TCT0 537 aa9.11□□□□□ -0.95
PTCD3-218ENST00000493430 ZFRQ96KR1 1074 aaKnown RBP9.11□□□□□ -0.95
PTCD3-218ENST00000493430 OSBPP22059 807 aa9.1□□□□□ -0.95
PTCD3-218ENST00000493430 ARHGEF1Q92888 912 aaKnown RBP9.1□□□□□ -0.95
PTCD3-218ENST00000493430 SEPT9Q9UHD8 586 aaPredicted RBP9.1□□□□□ -0.95
PTCD3-218ENST00000493430 PRIM1P49642 420 aaKnown RBP9.09□□□□□ -0.95
PTCD3-218ENST00000493430 FAM98CQ17RN3 349 aaKnown RBP9.09□□□□□ -0.95
PTCD3-218ENST00000493430 TSKSQ9UJT2 592 aa9.09□□□□□ -0.95
PTCD3-218ENST00000493430 SOWAHBA6NEL2 793 aa9.08□□□□□ -0.96
PTCD3-218ENST00000493430 BCAMP50895 628 aa9.08□□□□□ -0.96
PTCD3-218ENST00000493430 PRSS12P56730 875 aa9.08□□□□□ -0.96
PTCD3-218ENST00000493430 CDCA7LQ96GN5 454 aa9.08□□□□□ -0.96
PTCD3-218ENST00000493430 KCNV2Q8TDN2 545 aa9.06□□□□□ -0.96
PTCD3-218ENST00000493430 IFFO2Q5TF58 517 aa9.05□□□□□ -0.96
PTCD3-218ENST00000493430 NYAP1Q6ZVC0 841 aa9.04□□□□□ -0.96
PTCD3-218ENST00000493430 LRCH3Q96II8 777 aa9.04□□□□□ -0.96
PTCD3-218ENST00000493430 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.04□□□□□ -0.96
PTCD3-218ENST00000493430 PLCB2Q00722 1185 aa9.03□□□□□ -0.96
PTCD3-218ENST00000493430 CDHR5Q9HBB8 845 aa9.03□□□□□ -0.96
PTCD3-218ENST00000493430 P3H3Q8IVL6 736 aa9.02□□□□□ -0.97
PTCD3-218ENST00000493430 WBP1LQ9NX94 342 aa9.02□□□□□ -0.97
PTCD3-218ENST00000493430 RBM27Q9P2N5 1060 aaKnown RBP9.02□□□□□ -0.97
PTCD3-218ENST00000493430 FAM198AQ9UFP1 575 aa9.02□□□□□ -0.97
PTCD3-218ENST00000493430 NBPF26B4DH59 902 aa9.01□□□□□ -0.97
PTCD3-218ENST00000493430 SMAPO00193 183 aa9.01□□□□□ -0.97
PTCD3-218ENST00000493430 TATDN2Q93075 761 aa9.01□□□□□ -0.97
PTCD3-218ENST00000493430 TSR3Q9UJK0 312 aaKnown RBP9.01□□□□□ -0.97
PTCD3-218ENST00000493430 MLLT3P42568 568 aaPredicted RBP9□□□□□ -0.97
PTCD3-218ENST00000493430 PNMA3Q9UL41 463 aa9□□□□□ -0.97
PTCD3-218ENST00000493430 HPS5Q9UPZ3 1129 aa9□□□□□ -0.97
PTCD3-218ENST00000493430 NPDC1Q9NQX5 325 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-218ENST00000493430 C3orf80F5H4A9 247 aa8.97□□□□□ -0.97
PTCD3-218ENST00000493430 ITGBL1O95965 494 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-218ENST00000493430 HDGFP51858 240 aaKnown RBP8.97□□□□□ -0.97
PTCD3-218ENST00000493430 PPP4CP60510 307 aa8.97□□□□□ -0.97
PTCD3-218ENST00000493430 NUDT18Q6ZVK8 323 aa8.97□□□□□ -0.97
PTCD3-218ENST00000493430 SAMD7Q7Z3H4 446 aa8.97□□□□□ -0.97
PTCD3-218ENST00000493430 PADI6Q6TGC4 694 aa8.96□□□□□ -0.98
PTCD3-218ENST00000493430 TTC13Q8NBP0 860 aa8.96□□□□□ -0.98
PTCD3-218ENST00000493430 A0A0G2JS52 829 aa8.94□□□□□ -0.98
PTCD3-218ENST00000493430 RGS20O76081 388 aa8.93□□□□□ -0.98
PTCD3-218ENST00000493430 KCNC4Q03721 635 aa8.93□□□□□ -0.98
PTCD3-218ENST00000493430 SEMA3EO15041 775 aa8.92□□□□□ -0.98
PTCD3-218ENST00000493430 NUTM2FA1L443 756 aa8.91□□□□□ -0.98
PTCD3-218ENST00000493430 PTGDRQ13258 359 aa8.91□□□□□ -0.98
PTCD3-218ENST00000493430 RNF40O75150 1001 aa8.89□□□□□ -0.99
PTCD3-218ENST00000493430 HAP1P54257 671 aaPredicted RBP8.89□□□□□ -0.99
PTCD3-218ENST00000493430 EYA1Q99502 592 aa8.89□□□□□ -0.99
PTCD3-218ENST00000493430 SLC4A3P48751 1232 aa8.88□□□□□ -0.99
PTCD3-218ENST00000493430 NECTIN2Q92692 538 aa8.88□□□□□ -0.99
PTCD3-218ENST00000493430 SWT1Q5T5J6 900 aaKnown RBP8.87□□□□□ -0.99
PTCD3-218ENST00000493430 SLF2Q8IX21 1173 aa8.87□□□□□ -0.99
PTCD3-218ENST00000493430 FCHSD2O94868 740 aa8.86□□□□□ -0.99
PTCD3-218ENST00000493430 SMYD5Q6GMV2 418 aa8.86□□□□□ -0.99
PTCD3-218ENST00000493430 TJAP1Q5JTD0 557 aa8.85□□□□□ -0.99
PTCD3-218ENST00000493430 RBM46Q8TBY0 533 aaKnown RBP8.85□□□□□ -0.99
PTCD3-218ENST00000493430 TESPA1A2RU30 521 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-218ENST00000493430 MTRQ99707 1265 aa8.83□□□□□ -1
PTCD3-218ENST00000493430 ADGRG1Q9Y653 693 aa8.83□□□□□ -1
PTCD3-218ENST00000493430 DNAJB2P25686 324 aa8.82□□□□□ -1
PTCD3-218ENST00000493430 APLP1P51693 650 aa8.82□□□□□ -1
PTCD3-218ENST00000493430 IL21Q9HBE4 155 aa8.82□□□□□ -1
PTCD3-218ENST00000493430 RBM26Q5T8P6 1007 aaKnown RBP8.8□□□□□ -1
PTCD3-218ENST00000493430 KDM2AQ9Y2K7 1162 aa8.8□□□□□ -1
PTCD3-218ENST00000493430 HIC1Q14526 733 aa8.79□□□□□ -1
PTCD3-218ENST00000493430 FAM161AQ3B820 660 aa8.79□□□□□ -1
PTCD3-218ENST00000493430 PRR14Q9BWN1 585 aa8.79□□□□□ -1
PTCD3-218ENST00000493430 TMEM134Q9H6X4 195 aa8.79□□□□□ -1
PTCD3-218ENST00000493430 RCCD1A6NED2 376 aa8.78□□□□□ -1
PTCD3-218ENST00000493430 OATP04181 439 aa8.78□□□□□ -1
PTCD3-218ENST00000493430 IRX2Q9BZI1 471 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms