RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 ZBTB7CA1YPR0 619 aa4.71□□□□□ -1.66
CSMD3-207ENST00000493303 NAA30Q147X3 362 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-207ENST00000493303 TFIP11Q9UBB9 837 aaKnown RBP4.71□□□□□ -1.66
CSMD3-207ENST00000493303 DAXXQ9UER7 740 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-207ENST00000493303 ELMSAN1Q6PJG2 1045 aa4.7□□□□□ -1.66
CSMD3-207ENST00000493303 CEP170BQ9Y4F5 1589 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-207ENST00000493303 KIF22Q14807 665 aa4.7□□□□□ -1.66
CSMD3-207ENST00000493303 NOC2LQ9Y3T9 749 aaKnown RBP4.7□□□□□ -1.66
CSMD3-207ENST00000493303 BMS1Q14692 1282 aaKnown RBP4.7□□□□□ -1.66
CSMD3-207ENST00000493303 TIMELESSQ9UNS1 1208 aa4.7□□□□□ -1.66
CSMD3-207ENST00000493303 AATKQ6ZMQ8 1374 aa4.7□□□□□ -1.66
CSMD3-207ENST00000493303 DNAI2Q9GZS0 605 aa4.69□□□□□ -1.66
CSMD3-207ENST00000493303 PRKAG2Q9UGJ0 569 aa4.69□□□□□ -1.66
CSMD3-207ENST00000493303 IQGAP2Q13576 1575 aa4.69□□□□□ -1.66
CSMD3-207ENST00000493303 DHX37Q8IY37 1157 aaKnown RBP4.69□□□□□ -1.66
CSMD3-207ENST00000493303 EVA1CP58658 441 aa4.69□□□□□ -1.66
CSMD3-207ENST00000493303 STRCP1A6NGW2 1772 aa4.69□□□□□ -1.66
CSMD3-207ENST00000493303 KDM4FA0A1W2PPD8 638 aa4.68□□□□□ -1.66
CSMD3-207ENST00000493303 NPM3O75607 178 aaKnown RBP4.68□□□□□ -1.66
CSMD3-207ENST00000493303 AQRO60306 1485 aaKnown RBP eCLIP4.68□□□□□ -1.66
CSMD3-207ENST00000493303 KANK1Q14678 1352 aa4.68□□□□□ -1.66
CSMD3-207ENST00000493303 SENP3-EIF4A1A0A087X0R7 540 aa4.68□□□□□ -1.66
CSMD3-207ENST00000493303 NBPF15Q8N660 670 aa4.68□□□□□ -1.66
CSMD3-207ENST00000493303 POLR1AO95602 1720 aaPredicted RBP4.67□□□□□ -1.66
CSMD3-207ENST00000493303 ATF3P18847 181 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 BAG6P46379 1132 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 WASHC2CQ9Y4E1 1318 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 CSPP1Q1MSJ5 1256 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 RBM33Q96EV2 1170 aaKnown RBP4.67□□□□□ -1.66
CSMD3-207ENST00000493303 SENP3Q9H4L4 574 aaPredicted RBP4.67□□□□□ -1.66
CSMD3-207ENST00000493303 FHAD1B1AJZ9 1412 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 NF2P35240 595 aa4.67□□□□□ -1.66
CSMD3-207ENST00000493303 ZNF772Q68DY9 489 aaPredicted RBP4.66□□□□□ -1.66
CSMD3-207ENST00000493303 ENGASEQ8NFI3 743 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 ADGRL1O94910 1474 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 CSB-PGBD3P0DP91 1061 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 SETD1BQ9UPS6 1966 aaKnown RBP4.66□□□□□ -1.66
CSMD3-207ENST00000493303 NEURL4Q96JN8 1562 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 CROCC2H7BZ55 1655 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 ARXQ96QS3 562 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 CFAP74Q9C0B2 1584 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 LGR6Q9HBX8 967 aa4.66□□□□□ -1.66
CSMD3-207ENST00000493303 TBC1D9Q6ZT07 1266 aa4.65□□□□□ -1.66
CSMD3-207ENST00000493303 C3P01024 1663 aa4.65□□□□□ -1.66
CSMD3-207ENST00000493303 ANKRD13DQ6ZTN6 518 aa4.65□□□□□ -1.67
CSMD3-207ENST00000493303 USP35Q9P2H5 1018 aa4.65□□□□□ -1.67
CSMD3-207ENST00000493303 KIF21BO75037 1637 aa4.65□□□□□ -1.67
CSMD3-207ENST00000493303 SYNMO15061 1565 aa4.64□□□□□ -1.67
CSMD3-207ENST00000493303 SPATA31D1Q6ZQQ2 1576 aa4.64□□□□□ -1.67
CSMD3-207ENST00000493303 NOL10Q9BSC4 688 aaKnown RBP4.64□□□□□ -1.67
CSMD3-207ENST00000493303 PRAG1Q86YV5 1406 aa4.64□□□□□ -1.67
CSMD3-207ENST00000493303 RUBCNLQ9H714 662 aa4.64□□□□□ -1.67
CSMD3-207ENST00000493303 EXOC4Q96A65 974 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 FAM50BQ9Y247 325 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 MAP4K4O95819 1239 aaPredicted RBP4.63□□□□□ -1.67
CSMD3-207ENST00000493303 TCEAL9Q9UHQ7 104 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 TAOK2Q9UL54 1235 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 FHOD3Q2V2M9 1422 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 RAPGEF3O95398 923 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 LMOD1P29536 600 aaPredicted RBP4.63□□□□□ -1.67
CSMD3-207ENST00000493303 TMEM106CQ9BVX2 250 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 MAP3K13O43283 966 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 TRIM21P19474 475 aaKnown RBP4.63□□□□□ -1.67
CSMD3-207ENST00000493303 PSME1Q06323 249 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 SERTAD1Q9UHV2 236 aa4.63□□□□□ -1.67
CSMD3-207ENST00000493303 LRP5O75197 1615 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 AMOTL1Q8IY63 956 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 MPHOSPH6Q99547 160 aaKnown RBP4.62□□□□□ -1.67
CSMD3-207ENST00000493303 HDAC9Q9UKV0 1011 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 EIF5BO60841 1220 aaKnown RBP4.62□□□□□ -1.67
CSMD3-207ENST00000493303 NWD1Q149M9 1564 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 UTP14AQ9BVJ6 771 aaKnown RBP4.62□□□□□ -1.67
CSMD3-207ENST00000493303 MAGI2Q86UL8 1455 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 UBAP1LF5GYI3 381 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 CLSTN1O94985 981 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 PIP4K2BP78356 416 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 IRF2BPLQ9H1B7 796 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 WDR7Q9Y4E6 1490 aa4.62□□□□□ -1.67
CSMD3-207ENST00000493303 GPR162Q16538 588 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 OTUD7BQ6GQQ9 843 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 TCOF1Q13428 1488 aaKnown RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 INO80Q9ULG1 1556 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 MADDQ8WXG6 1647 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 PLB1Q6P1J6 1458 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 GTF2E1P29083 439 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 ZNF326Q5BKZ1 582 aaKnown RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 ATF5Q9Y2D1 282 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 NEO1Q92859 1461 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 LEO1Q8WVC0 666 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 RTL5Q5HYW3 569 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-207ENST00000493303 SMC4Q9NTJ3 1288 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 PHLDB1Q86UU1 1377 aa4.61□□□□□ -1.67
CSMD3-207ENST00000493303 SLC17A8Q8NDX2 589 aa4.6□□□□□ -1.67
CSMD3-207ENST00000493303 MTIF3Q9H2K0 278 aaKnown RBP4.6□□□□□ -1.67
CSMD3-207ENST00000493303 FBXO41Q8TF61 875 aa4.6□□□□□ -1.67
CSMD3-207ENST00000493303 EDARQ9UNE0 448 aa4.6□□□□□ -1.67
CSMD3-207ENST00000493303 FAM50AQ14320 339 aaKnown RBP4.6□□□□□ -1.67
CSMD3-207ENST00000493303 NBPF1Q3BBV0 1214 aa4.6□□□□□ -1.67
CSMD3-207ENST00000493303 SPHKAPQ2M3C7 1700 aa4.6□□□□□ -1.67
CSMD3-207ENST00000493303 VWDEQ8N2E2 1590 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms