RNA–Protein interactions for RNA: ENST00000492657.5

PRAME-213, Transcript of preferentially expressed antigen in melanoma, humanhuman

TSL 1 (best)

Gene PRAME, Length 2,831 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-213ENST00000492657 ZCCHC11Q5TAX3 1644 aaKnown RBP17.7■□□□□ 0.42
PRAME-213ENST00000492657 ST20-MTHFSA0A0A6YYL1 179 aa17.69■□□□□ 0.42
PRAME-213ENST00000492657 RALGAPBQ86X10 1494 aa17.69■□□□□ 0.42
PRAME-213ENST00000492657 EFCAB2Q5VUJ9 269 aa17.68■□□□□ 0.42
PRAME-213ENST00000492657 DHX29Q7Z478 1369 aaKnown RBP17.68■□□□□ 0.42
PRAME-213ENST00000492657 PLCH2O75038 1416 aa17.68■□□□□ 0.42
PRAME-213ENST00000492657 PLA2R1Q13018 1463 aa17.67■□□□□ 0.42
PRAME-213ENST00000492657 MAST1Q9Y2H9 1570 aa17.67■□□□□ 0.42
PRAME-213ENST00000492657 CCDC144AA2RUR9 1427 aa17.65■□□□□ 0.42
PRAME-213ENST00000492657 TRAPPC8Q9Y2L5 1435 aa17.65■□□□□ 0.42
PRAME-213ENST00000492657 IRX6P78412 446 aaPredicted RBP17.65■□□□□ 0.42
PRAME-213ENST00000492657 NBPF1Q3BBV0 1214 aa17.64■□□□□ 0.41
PRAME-213ENST00000492657 AFAP1Q8N556 730 aa17.64■□□□□ 0.41
PRAME-213ENST00000492657 UHRF1BP1LA0JNW5 1464 aa17.63■□□□□ 0.41
PRAME-213ENST00000492657 ROCK2O75116 1388 aaKnown RBP17.63■□□□□ 0.41
PRAME-213ENST00000492657 UNC13BO14795 1591 aa17.63■□□□□ 0.41
PRAME-213ENST00000492657 RBM19Q9Y4C8 960 aaKnown RBP17.62■□□□□ 0.41
PRAME-213ENST00000492657 PLXNC1O60486 1568 aa17.61■□□□□ 0.41
PRAME-213ENST00000492657 SENP3-EIF4A1A0A087X0R7 540 aa17.6■□□□□ 0.41
PRAME-213ENST00000492657 DUOX2Q9NRD8 1548 aa17.6■□□□□ 0.41
PRAME-213ENST00000492657 PRAG1Q86YV5 1406 aa17.59■□□□□ 0.41
PRAME-213ENST00000492657 ARID4BQ4LE39 1312 aaPredicted RBP17.58■□□□□ 0.41
PRAME-213ENST00000492657 ABCC1P33527 1531 aa17.58■□□□□ 0.4
PRAME-213ENST00000492657 SPAG9O60271 1321 aaKnown RBP17.58■□□□□ 0.4
PRAME-213ENST00000492657 A2MP01023 1474 aa17.58■□□□□ 0.4
PRAME-213ENST00000492657 IQGAP3Q86VI3 1631 aa17.57■□□□□ 0.4
PRAME-213ENST00000492657 ERBINQ96RT1 1412 aa17.55■□□□□ 0.4
PRAME-213ENST00000492657 ZBED9Q6R2W3 1325 aa17.54■□□□□ 0.4
PRAME-213ENST00000492657 TRPM1Q7Z4N2 1603 aa17.53■□□□□ 0.4
PRAME-213ENST00000492657 MSH5O43196 834 aa17.53■□□□□ 0.4
PRAME-213ENST00000492657 MAGI2Q86UL8 1455 aa17.52■□□□□ 0.39
PRAME-213ENST00000492657 MYT1LQ9UL68 1186 aa17.51■□□□□ 0.39
PRAME-213ENST00000492657 WDR7Q9Y4E6 1490 aa17.5■□□□□ 0.39
PRAME-213ENST00000492657 TMC1Q8TDI8 760 aa17.48■□□□□ 0.39
PRAME-213ENST00000492657 PNISRQ8TF01 805 aaKnown RBP17.48■□□□□ 0.39
PRAME-213ENST00000492657 ATP10AO60312 1499 aa17.47■□□□□ 0.39
PRAME-213ENST00000492657 GPRASP1Q5JY77 1395 aa17.47■□□□□ 0.39
PRAME-213ENST00000492657 ZFYVE16Q7Z3T8 1539 aa17.47■□□□□ 0.39
PRAME-213ENST00000492657 TESK2Q96S53 571 aa17.47■□□□□ 0.39
PRAME-213ENST00000492657 FANCAO15360 1455 aa17.47■□□□□ 0.39
PRAME-213ENST00000492657 DISP3Q9P2K9 1392 aa17.45■□□□□ 0.38
PRAME-213ENST00000492657 RTEL1-TNFRSF6BF6WH68 1400 aa17.45■□□□□ 0.38
PRAME-213ENST00000492657 SCAPERQ9BY12 1400 aa17.45■□□□□ 0.38
PRAME-213ENST00000492657 KIF3BO15066 747 aa17.45■□□□□ 0.38
PRAME-213ENST00000492657 E9PCH4 1651 aa17.44■□□□□ 0.38
PRAME-213ENST00000492657 ARAP3Q8WWN8 1544 aa17.43■□□□□ 0.38
PRAME-213ENST00000492657 ASXL2Q76L83 1435 aa17.43■□□□□ 0.38
PRAME-213ENST00000492657 MYBBP1AQ9BQG0 1328 aaKnown RBP17.42■□□□□ 0.38
PRAME-213ENST00000492657 PER1O15534 1290 aaPredicted RBP17.41■□□□□ 0.38
PRAME-213ENST00000492657 RALBP1Q15311 655 aa17.41■□□□□ 0.38
PRAME-213ENST00000492657 ADGRL1O94910 1474 aa17.41■□□□□ 0.38
PRAME-213ENST00000492657 PRDM15P57071 1507 aaPredicted RBP17.41■□□□□ 0.38
PRAME-213ENST00000492657 ABCA9Q8IUA7 1624 aa17.4■□□□□ 0.38
PRAME-213ENST00000492657 ATP7AQ04656 1500 aa17.4■□□□□ 0.38
PRAME-213ENST00000492657 CC2D1BQ5T0F9 858 aaKnown RBP17.39■□□□□ 0.38
PRAME-213ENST00000492657 PANK3Q9H999 370 aa17.39■□□□□ 0.38
PRAME-213ENST00000492657 COL17A1Q9UMD9 1497 aaPredicted RBP17.38■□□□□ 0.37
PRAME-213ENST00000492657 BRD4O60885 1362 aaPredicted RBP17.37■□□□□ 0.37
PRAME-213ENST00000492657 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
PRAME-213ENST00000492657 EIF2AK4Q9P2K8 1649 aaKnown RBP17.37■□□□□ 0.37
PRAME-213ENST00000492657 INO80Q9ULG1 1556 aaPredicted RBP17.37■□□□□ 0.37
PRAME-213ENST00000492657 PTPRTO14522 1441 aa17.36■□□□□ 0.37
PRAME-213ENST00000492657 KTN1Q86UP2 1357 aaKnown RBP17.36■□□□□ 0.37
PRAME-213ENST00000492657 TMF1P82094 1093 aa17.36■□□□□ 0.37
PRAME-213ENST00000492657 LAMC1P11047 1609 aa17.36■□□□□ 0.37
PRAME-213ENST00000492657 CLTCL1P53675 1640 aa17.36■□□□□ 0.37
PRAME-213ENST00000492657 TRPM2O94759 1503 aa17.36■□□□□ 0.37
PRAME-213ENST00000492657 SMG6Q86US8 1419 aaKnown RBP17.36■□□□□ 0.37
PRAME-213ENST00000492657 PPP4R2Q9NY27 417 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 NUDCQ9Y266 331 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 SALL2Q9Y467 1007 aaPredicted RBP17.35■□□□□ 0.37
PRAME-213ENST00000492657 KANK1Q14678 1352 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 DEPDC5O75140 1603 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 LRPPRCP42704 1394 aaKnown RBP17.35■□□□□ 0.37
PRAME-213ENST00000492657 PARD3Q8TEW0 1356 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 SPHKAPQ2M3C7 1700 aa17.35■□□□□ 0.37
PRAME-213ENST00000492657 NPM1P06748 294 aaKnown RBP eCLIP17.34■□□□□ 0.37
PRAME-213ENST00000492657 B4GALNT3Q6L9W6 998 aa17.34■□□□□ 0.37
PRAME-213ENST00000492657 NLRP13Q86W25 1043 aa17.34■□□□□ 0.37
PRAME-213ENST00000492657 MADDQ8WXG6 1647 aa17.33■□□□□ 0.36
PRAME-213ENST00000492657 UGGT1Q9NYU2 1555 aa17.32■□□□□ 0.36
PRAME-213ENST00000492657 TET3O43151 1660 aa17.32■□□□□ 0.36
PRAME-213ENST00000492657 ERICH6BQ5W0A0 696 aa17.32■□□□□ 0.36
PRAME-213ENST00000492657 RNF17Q9BXT8 1623 aaKnown RBP17.31■□□□□ 0.36
PRAME-213ENST00000492657 VWDEQ8N2E2 1590 aa17.31■□□□□ 0.36
PRAME-213ENST00000492657 CEP152O94986 1710 aa17.31■□□□□ 0.36
PRAME-213ENST00000492657 MROH1Q8NDA8 1641 aa17.3■□□□□ 0.36
PRAME-213ENST00000492657 ERICH6Q7L0X2 663 aa17.29■□□□□ 0.36
PRAME-213ENST00000492657 KIDINS220Q9ULH0 1771 aa17.29■□□□□ 0.36
PRAME-213ENST00000492657 CFAP70Q5T0N1 1121 aa17.29■□□□□ 0.36
PRAME-213ENST00000492657 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
PRAME-213ENST00000492657 CFAP65Q6ZU64 1925 aaKnown RBP17.28■□□□□ 0.36
PRAME-213ENST00000492657 CD109Q6YHK3 1445 aa17.27■□□□□ 0.35
PRAME-213ENST00000492657 GGT6Q6P531 493 aa17.26■□□□□ 0.35
PRAME-213ENST00000492657 IQGAP1P46940 1657 aa17.25■□□□□ 0.35
PRAME-213ENST00000492657 SCAF11Q99590 1463 aaKnown RBP17.25■□□□□ 0.35
PRAME-213ENST00000492657 WASHC2CQ9Y4E1 1318 aa17.25■□□□□ 0.35
PRAME-213ENST00000492657 CHGAP10645 457 aaKnown RBP17.25■□□□□ 0.35
PRAME-213ENST00000492657 RNF123Q5XPI4 1314 aa17.24■□□□□ 0.35
PRAME-213ENST00000492657 ZNF518AQ6AHZ1 1483 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms