RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 DIP2CQ9Y2E4 1556 aa14.25□□□□□ -0.13
USP54-214ENST00000492357 A2MP01023 1474 aa14.25□□□□□ -0.13
USP54-214ENST00000492357 KDM6BO15054 1643 aa14.24□□□□□ -0.13
USP54-214ENST00000492357 ABCA6Q8N139 1617 aa14.24□□□□□ -0.13
USP54-214ENST00000492357 RNF17Q9BXT8 1623 aaKnown RBP14.23□□□□□ -0.13
USP54-214ENST00000492357 IQGAP3Q86VI3 1631 aa14.23□□□□□ -0.13
USP54-214ENST00000492357 AGLP35573 1532 aa14.22□□□□□ -0.13
USP54-214ENST00000492357 ARHGEF40Q8TER5 1519 aa14.22□□□□□ -0.13
USP54-214ENST00000492357 CCER1Q8TC90 406 aaPredicted RBP14.22□□□□□ -0.13
USP54-214ENST00000492357 PRDM15P57071 1507 aaPredicted RBP14.21□□□□□ -0.13
USP54-214ENST00000492357 ATP10AO60312 1499 aa14.21□□□□□ -0.13
USP54-214ENST00000492357 TRHP20396 242 aaPredicted RBP14.2□□□□□ -0.14
USP54-214ENST00000492357 VWDEQ8N2E2 1590 aa14.2□□□□□ -0.14
USP54-214ENST00000492357 RAPGEF3O95398 923 aa14.19□□□□□ -0.14
USP54-214ENST00000492357 LMTK2Q8IWU2 1503 aa14.18□□□□□ -0.14
USP54-214ENST00000492357 KANK1Q14678 1352 aa14.18□□□□□ -0.14
USP54-214ENST00000492357 PZPP20742 1482 aa14.18□□□□□ -0.14
USP54-214ENST00000492357 COL17A1Q9UMD9 1497 aaPredicted RBP14.18□□□□□ -0.14
USP54-214ENST00000492357 ZC3H13Q5T200 1668 aaKnown RBP14.17□□□□□ -0.14
USP54-214ENST00000492357 TIMELESSQ9UNS1 1208 aa14.17□□□□□ -0.14
USP54-214ENST00000492357 NUP155O75694 1391 aa14.17□□□□□ -0.14
USP54-214ENST00000492357 MYT1LQ9UL68 1186 aa14.16□□□□□ -0.14
USP54-214ENST00000492357 TET3O43151 1660 aa14.15□□□□□ -0.14
USP54-214ENST00000492357 TRIM52Q96A61 297 aa14.15□□□□□ -0.14
USP54-214ENST00000492357 MPHOSPH9Q99550 1183 aa14.15□□□□□ -0.14
USP54-214ENST00000492357 MROH1Q8NDA8 1641 aa14.15□□□□□ -0.14
USP54-214ENST00000492357 YEATS2Q9ULM3 1422 aa14.15□□□□□ -0.14
USP54-214ENST00000492357 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
USP54-214ENST00000492357 RPRD2Q5VT52 1461 aaKnown RBP14.12□□□□□ -0.15
USP54-214ENST00000492357 KIF3BO15066 747 aa14.1□□□□□ -0.15
USP54-214ENST00000492357 EFCAB6Q5THR3 1501 aa14.09□□□□□ -0.15
USP54-214ENST00000492357 ANKRD30BQ9BXX2 1392 aa14.09□□□□□ -0.15
USP54-214ENST00000492357 ARHGAP31Q2M1Z3 1444 aa14.08□□□□□ -0.15
USP54-214ENST00000492357 MSH5O43196 834 aa14.07□□□□□ -0.16
USP54-214ENST00000492357 ABCC3O15438 1527 aa14.06□□□□□ -0.16
USP54-214ENST00000492357 NEURL4Q96JN8 1562 aa14.05□□□□□ -0.16
USP54-214ENST00000492357 PKD2Q13563 968 aa14.05□□□□□ -0.16
USP54-214ENST00000492357 E9PCH4 1651 aa14.04□□□□□ -0.16
USP54-214ENST00000492357 PTPRTO14522 1441 aa14.04□□□□□ -0.16
USP54-214ENST00000492357 CNTLNQ9NXG0 1405 aa14.04□□□□□ -0.16
USP54-214ENST00000492357 CAMSAP1Q5T5Y3 1602 aa14.04□□□□□ -0.16
USP54-214ENST00000492357 TRPM2O94759 1503 aa14.03□□□□□ -0.16
USP54-214ENST00000492357 CEP152O94986 1710 aa14.02□□□□□ -0.16
USP54-214ENST00000492357 SPHKAPQ2M3C7 1700 aa14.02□□□□□ -0.16
USP54-214ENST00000492357 MROH2AA6NES4 1674 aa14.02□□□□□ -0.16
USP54-214ENST00000492357 WASHC2CQ9Y4E1 1318 aa14□□□□□ -0.17
USP54-214ENST00000492357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14□□□□□ -0.17
USP54-214ENST00000492357 CCDC144AA2RUR9 1427 aa13.99□□□□□ -0.17
USP54-214ENST00000492357 SIGLEC1Q9BZZ2 1709 aa13.98□□□□□ -0.17
USP54-214ENST00000492357 GGT6Q6P531 493 aa13.98□□□□□ -0.17
USP54-214ENST00000492357 STAC3Q96MF2 364 aa13.98□□□□□ -0.17
USP54-214ENST00000492357 NPATQ14207 1427 aa13.98□□□□□ -0.17
USP54-214ENST00000492357 TONSLQ96HA7 1378 aa13.97□□□□□ -0.17
USP54-214ENST00000492357 PLA2R1Q13018 1463 aa13.97□□□□□ -0.17
USP54-214ENST00000492357 NOS1P29475 1434 aa13.97□□□□□ -0.17
USP54-214ENST00000492357 CLTCQ00610 1675 aaKnown RBP13.94□□□□□ -0.18
USP54-214ENST00000492357 PIK3C2BO00750 1634 aa13.93□□□□□ -0.18
USP54-214ENST00000492357 SPATA31D1Q6ZQQ2 1576 aa13.93□□□□□ -0.18
USP54-214ENST00000492357 ESF1Q9H501 851 aaKnown RBP13.93□□□□□ -0.18
USP54-214ENST00000492357 PREX1Q8TCU6 1659 aa13.93□□□□□ -0.18
USP54-214ENST00000492357 SLC52A1Q9NWF4 448 aa13.92□□□□□ -0.18
USP54-214ENST00000492357 SIN3AQ96ST3 1273 aa13.91□□□□□ -0.18
USP54-214ENST00000492357 KIF1BO60333 1816 aa13.91□□□□□ -0.18
USP54-214ENST00000492357 KDM5AP29375 1690 aaKnown RBP13.91□□□□□ -0.18
USP54-214ENST00000492357 ERVK-7P63135 1459 aa13.9□□□□□ -0.18
USP54-214ENST00000492357 FER1L4A9Z1Z3 1794 aa13.9□□□□□ -0.18
USP54-214ENST00000492357 CLTCL1P53675 1640 aa13.9□□□□□ -0.19
USP54-214ENST00000492357 SPATA31E1Q6ZUB1 1445 aa13.9□□□□□ -0.19
USP54-214ENST00000492357 ARID4BQ4LE39 1312 aaPredicted RBP13.9□□□□□ -0.19
USP54-214ENST00000492357 PPP1R15AO75807 674 aaPredicted RBP13.88□□□□□ -0.19
USP54-214ENST00000492357 NEUROD1Q13562 356 aa13.88□□□□□ -0.19
USP54-214ENST00000492357 ADAMTSL3P82987 1691 aa13.88□□□□□ -0.19
USP54-214ENST00000492357 SYNMO15061 1565 aa13.88□□□□□ -0.19
USP54-214ENST00000492357 ADGRB3O60242 1522 aa13.87□□□□□ -0.19
USP54-214ENST00000492357 UHRF1BP1Q6BDS2 1440 aa13.87□□□□□ -0.19
USP54-214ENST00000492357 ZMYM3Q14202 1370 aa13.86□□□□□ -0.19
USP54-214ENST00000492357 RPGRIP1LQ68CZ1 1315 aa13.86□□□□□ -0.19
USP54-214ENST00000492357 MYOM2P54296 1465 aa13.84□□□□□ -0.19
USP54-214ENST00000492357 NLRP1Q9C000 1473 aa13.84□□□□□ -0.19
USP54-214ENST00000492357 PPP4R3CPQ6ZMV5 832 aa13.83□□□□□ -0.2
USP54-214ENST00000492357 L3MBTL2Q969R5 705 aa13.83□□□□□ -0.2
USP54-214ENST00000492357 C3P01024 1663 aa13.82□□□□□ -0.2
USP54-214ENST00000492357 IFT172Q9UG01 1749 aa13.82□□□□□ -0.2
USP54-214ENST00000492357 MADDQ8WXG6 1647 aa13.81□□□□□ -0.2
USP54-214ENST00000492357 ZFYVE9O95405 1425 aa13.81□□□□□ -0.2
USP54-214ENST00000492357 TMEM131LA2VDJ0 1609 aa13.8□□□□□ -0.2
USP54-214ENST00000492357 MLECQ14165 292 aa13.8□□□□□ -0.2
USP54-214ENST00000492357 KIAA1210Q9ULL0 1709 aa13.8□□□□□ -0.2
USP54-214ENST00000492357 TNRQ92752 1358 aa13.8□□□□□ -0.2
USP54-214ENST00000492357 UGGT1Q9NYU2 1555 aa13.79□□□□□ -0.2
USP54-214ENST00000492357 LAMC1P11047 1609 aa13.79□□□□□ -0.2
USP54-214ENST00000492357 RALGAPBQ86X10 1494 aa13.78□□□□□ -0.2
USP54-214ENST00000492357 NRXN1Q9ULB1 1477 aa13.78□□□□□ -0.2
USP54-214ENST00000492357 PPLO60437 1756 aa13.78□□□□□ -0.2
USP54-214ENST00000492357 CFAP65Q6ZU64 1925 aaKnown RBP13.78□□□□□ -0.2
USP54-214ENST00000492357 RIMS1Q86UR5 1692 aaKnown RBP13.77□□□□□ -0.21
USP54-214ENST00000492357 PRAG1Q86YV5 1406 aa13.77□□□□□ -0.21
USP54-214ENST00000492357 SETD1BQ9UPS6 1966 aaKnown RBP13.76□□□□□ -0.21
USP54-214ENST00000492357 IDI1Q13907 227 aa13.76□□□□□ -0.21
USP54-214ENST00000492357 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms