RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 ZBED2Q9BTP6 218 aa9.3□□□□□ -0.92
VPS41-214ENST00000490924 TRIM26Q12899 539 aaPredicted RBP9.29□□□□□ -0.92
VPS41-214ENST00000490924 PPP1R3GB7ZBB8 358 aa9.28□□□□□ -0.92
VPS41-214ENST00000490924 ZEB1P37275 1124 aaPredicted RBP9.28□□□□□ -0.92
VPS41-214ENST00000490924 TYW1BQ6NUM6 668 aa9.28□□□□□ -0.92
VPS41-214ENST00000490924 ADAM33Q9BZ11 813 aa9.28□□□□□ -0.92
VPS41-214ENST00000490924 MFSD10Q14728 455 aa9.26□□□□□ -0.93
VPS41-214ENST00000490924 SCRIBQ14160 1630 aa9.26□□□□□ -0.93
VPS41-214ENST00000490924 BHMG1C9JSJ3 638 aaPredicted RBP9.25□□□□□ -0.93
VPS41-214ENST00000490924 PHF14O94880 888 aa9.25□□□□□ -0.93
VPS41-214ENST00000490924 EPAS1Q99814 870 aa9.25□□□□□ -0.93
VPS41-214ENST00000490924 PCGF6Q9BYE7 350 aa9.25□□□□□ -0.93
VPS41-214ENST00000490924 RABGEF1Q9UJ41 708 aa9.25□□□□□ -0.93
VPS41-214ENST00000490924 IFFO2Q5TF58 517 aa9.24□□□□□ -0.93
VPS41-214ENST00000490924 NYAP1Q6ZVC0 841 aa9.22□□□□□ -0.93
VPS41-214ENST00000490924 LAPTM4BQ86VI4 370 aa9.22□□□□□ -0.93
VPS41-214ENST00000490924 PCDHGA10Q9Y5H3 936 aa9.21□□□□□ -0.94
VPS41-214ENST00000490924 IRX2Q9BZI1 471 aaPredicted RBP9.2□□□□□ -0.94
VPS41-214ENST00000490924 EMILIN3Q9NT22 766 aa9.19□□□□□ -0.94
VPS41-214ENST00000490924 ONECUT3O60422 494 aaPredicted RBP9.18□□□□□ -0.94
VPS41-214ENST00000490924 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
VPS41-214ENST00000490924 A0A0G2JS52 829 aa9.17□□□□□ -0.94
VPS41-214ENST00000490924 KIAA1468Q9P260 1216 aa9.17□□□□□ -0.94
VPS41-214ENST00000490924 PROX2Q3B8N5 592 aa9.16□□□□□ -0.94
VPS41-214ENST00000490924 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.16□□□□□ -0.94
VPS41-214ENST00000490924 C6orf132Q5T0Z8 1188 aa9.15□□□□□ -0.94
VPS41-214ENST00000490924 PACS2Q86VP3 889 aa9.15□□□□□ -0.94
VPS41-214ENST00000490924 RBM33Q96EV2 1170 aaKnown RBP9.15□□□□□ -0.94
VPS41-214ENST00000490924 DPYSL4O14531 572 aa9.14□□□□□ -0.95
VPS41-214ENST00000490924 ZFRQ96KR1 1074 aaKnown RBP9.14□□□□□ -0.95
VPS41-214ENST00000490924 WDR70Q9NW82 654 aa9.14□□□□□ -0.95
VPS41-214ENST00000490924 EIF4G1Q04637 1599 aaKnown RBP9.13□□□□□ -0.95
VPS41-214ENST00000490924 MROH2BQ7Z745 1585 aa9.13□□□□□ -0.95
VPS41-214ENST00000490924 LOC105371045A0A1W2PR82 267 aa9.13□□□□□ -0.95
VPS41-214ENST00000490924 SOWAHBA6NEL2 793 aa9.13□□□□□ -0.95
VPS41-214ENST00000490924 COL9A1P20849 921 aa9.13□□□□□ -0.95
VPS41-214ENST00000490924 BBXQ8WY36 941 aaPredicted RBP9.13□□□□□ -0.95
VPS41-214ENST00000490924 LRCH3Q96II8 777 aa9.13□□□□□ -0.95
VPS41-214ENST00000490924 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.13□□□□□ -0.95
VPS41-214ENST00000490924 BCAMP50895 628 aa9.12□□□□□ -0.95
VPS41-214ENST00000490924 HDGFP51858 240 aaKnown RBP9.12□□□□□ -0.95
VPS41-214ENST00000490924 KCNC4Q03721 635 aa9.12□□□□□ -0.95
VPS41-214ENST00000490924 FAM98CQ17RN3 349 aaKnown RBP9.12□□□□□ -0.95
VPS41-214ENST00000490924 SPDYE16A6NNV3 312 aaPredicted RBP9.11□□□□□ -0.95
VPS41-214ENST00000490924 TRIM6-TRIM34B2RNG4 842 aa9.11□□□□□ -0.95
VPS41-214ENST00000490924 MAP3K7O43318 606 aa9.11□□□□□ -0.95
VPS41-214ENST00000490924 CAMK2BQ13554 666 aa9.1□□□□□ -0.95
VPS41-214ENST00000490924 CADPS2Q86UW7 1296 aa9.1□□□□□ -0.95
VPS41-214ENST00000490924 DDX12PQ92771 950 aa9.1□□□□□ -0.95
VPS41-214ENST00000490924 CECR2Q9BXF3 1484 aa9.09□□□□□ -0.95
VPS41-214ENST00000490924 EEA1Q15075 1411 aa9.09□□□□□ -0.95
VPS41-214ENST00000490924 NBR1Q14596 966 aa9.09□□□□□ -0.95
VPS41-214ENST00000490924 SPRYD3Q8NCJ5 442 aa9.09□□□□□ -0.95
VPS41-214ENST00000490924 SEPT9Q9UHD8 586 aaPredicted RBP9.09□□□□□ -0.95
VPS41-214ENST00000490924 TSR3Q9UJK0 312 aaKnown RBP9.09□□□□□ -0.95
VPS41-214ENST00000490924 TOP2AP11388 1531 aaKnown RBP9.09□□□□□ -0.95
VPS41-214ENST00000490924 ITGBL1O95965 494 aaPredicted RBP9.08□□□□□ -0.96
VPS41-214ENST00000490924 HPS5Q9UPZ3 1129 aa9.08□□□□□ -0.96
VPS41-214ENST00000490924 WRNQ14191 1432 aaPredicted RBP eCLIP9.07□□□□□ -0.96
VPS41-214ENST00000490924 PPP4CP60510 307 aa9.07□□□□□ -0.96
VPS41-214ENST00000490924 CERKQ8TCT0 537 aa9.07□□□□□ -0.96
VPS41-214ENST00000490924 WBP1LQ9NX94 342 aa9.06□□□□□ -0.96
VPS41-214ENST00000490924 SLC4A3P48751 1232 aa9.05□□□□□ -0.96
VPS41-214ENST00000490924 EN1Q05925 392 aaPredicted RBP9.04□□□□□ -0.96
VPS41-214ENST00000490924 NECTIN2Q92692 538 aa9.04□□□□□ -0.96
VPS41-214ENST00000490924 WIZO95785 1651 aa9.03□□□□□ -0.96
VPS41-214ENST00000490924 SMARCA4P51532 1647 aa9.02□□□□□ -0.96
VPS41-214ENST00000490924 NBPF26B4DH59 902 aa9.02□□□□□ -0.97
VPS41-214ENST00000490924 E2F4Q16254 413 aa9.02□□□□□ -0.97
VPS41-214ENST00000490924 Q6ZNB5 142 aa9.02□□□□□ -0.97
VPS41-214ENST00000490924 PEG3Q9GZU2 1588 aa9.02□□□□□ -0.97
VPS41-214ENST00000490924 LAPTM4AQ15012 233 aa9.01□□□□□ -0.97
VPS41-214ENST00000490924 PDIA6Q15084 440 aa9.01□□□□□ -0.97
VPS41-214ENST00000490924 GRXCR2A6NFK2 248 aa8.99□□□□□ -0.97
VPS41-214ENST00000490924 RNF40O75150 1001 aa8.99□□□□□ -0.97
VPS41-214ENST00000490924 PRSS12P56730 875 aa8.98□□□□□ -0.97
VPS41-214ENST00000490924 CDCA7LQ96GN5 454 aa8.98□□□□□ -0.97
VPS41-214ENST00000490924 CFAP44Q96MT7 982 aa8.97□□□□□ -0.97
VPS41-214ENST00000490924 SMARCA2P51531 1590 aa8.97□□□□□ -0.97
VPS41-214ENST00000490924 TNIKQ9UKE5 1360 aa8.97□□□□□ -0.97
VPS41-214ENST00000490924 TSR1Q2NL82 804 aaKnown RBP8.96□□□□□ -0.98
VPS41-214ENST00000490924 PPARGC1BQ86YN6 1023 aaKnown RBP8.96□□□□□ -0.98
VPS41-214ENST00000490924 PNMA3Q9UL41 463 aa8.96□□□□□ -0.98
VPS41-214ENST00000490924 TSKSQ9UJT2 592 aa8.95□□□□□ -0.98
VPS41-214ENST00000490924 GGCXP38435 758 aa8.94□□□□□ -0.98
VPS41-214ENST00000490924 AMER1Q5JTC6 1135 aaPredicted RBP8.94□□□□□ -0.98
VPS41-214ENST00000490924 PAXIP1Q6ZW49 1069 aaPredicted RBP8.94□□□□□ -0.98
VPS41-214ENST00000490924 SAMD7Q7Z3H4 446 aa8.94□□□□□ -0.98
VPS41-214ENST00000490924 IL21Q9HBE4 155 aa8.94□□□□□ -0.98
VPS41-214ENST00000490924 CCDC88BA6NC98 1476 aa8.94□□□□□ -0.98
VPS41-214ENST00000490924 TATDN2Q93075 761 aa8.93□□□□□ -0.98
VPS41-214ENST00000490924 SMAPO00193 183 aa8.91□□□□□ -0.98
VPS41-214ENST00000490924 SLF2Q8IX21 1173 aa8.9□□□□□ -0.98
VPS41-214ENST00000490924 RBM27Q9P2N5 1060 aaKnown RBP8.9□□□□□ -0.98
VPS41-214ENST00000490924 GFRA3O60609 400 aa8.89□□□□□ -0.99
VPS41-214ENST00000490924 PRR14Q9BWN1 585 aa8.89□□□□□ -0.99
VPS41-214ENST00000490924 ARIH1Q9Y4X5 557 aaPredicted RBP8.89□□□□□ -0.99
VPS41-214ENST00000490924 NUDT18Q6ZVK8 323 aa8.88□□□□□ -0.99
VPS41-214ENST00000490924 CEP162Q5TB80 1403 aa8.88□□□□□ -0.99
VPS41-214ENST00000490924 MTRQ99707 1265 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms