RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CAMK2BQ13554 666 aa5.35□□□□□ -1.55
HMGB1-208ENST00000490788 KCNK17Q96T54 332 aa5.35□□□□□ -1.55
HMGB1-208ENST00000490788 KDM2AQ9Y2K7 1162 aa5.35□□□□□ -1.55
HMGB1-208ENST00000490788 DPYSL4O14531 572 aa5.34□□□□□ -1.55
HMGB1-208ENST00000490788 GFRA3O60609 400 aa5.34□□□□□ -1.55
HMGB1-208ENST00000490788 ARHGEF1Q92888 912 aaKnown RBP5.34□□□□□ -1.55
HMGB1-208ENST00000490788 BCL2L12Q9HB09 334 aa5.34□□□□□ -1.55
HMGB1-208ENST00000490788 EMILIN3Q9NT22 766 aa5.34□□□□□ -1.55
HMGB1-208ENST00000490788 EVI5O60447 810 aa5.33□□□□□ -1.56
HMGB1-208ENST00000490788 SPDYE16A6NNV3 312 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-208ENST00000490788 BHMG1C9JSJ3 638 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-208ENST00000490788 NRG2O14511 850 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-208ENST00000490788 FOSBP53539 338 aa5.32□□□□□ -1.56
HMGB1-208ENST00000490788 ZNF454Q8N9F8 522 aa5.32□□□□□ -1.56
HMGB1-208ENST00000490788 KCNV2Q8TDN2 545 aa5.32□□□□□ -1.56
HMGB1-208ENST00000490788 ANO8Q9HCE9 1232 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-208ENST00000490788 PTPREP23469 700 aa5.31□□□□□ -1.56
HMGB1-208ENST00000490788 SUZ12Q15022 739 aaKnown RBP5.31□□□□□ -1.56
HMGB1-208ENST00000490788 PTPN5P54829 565 aa5.3□□□□□ -1.56
HMGB1-208ENST00000490788 THSD4Q6ZMP0 1018 aa5.3□□□□□ -1.56
HMGB1-208ENST00000490788 JPH4Q96JJ6 628 aa5.3□□□□□ -1.56
HMGB1-208ENST00000490788 GOLGA8CPA6NN73 597 aa5.29□□□□□ -1.56
HMGB1-208ENST00000490788 TULP1O00294 542 aaPredicted RBP5.29□□□□□ -1.56
HMGB1-208ENST00000490788 NBR1Q14596 966 aa5.29□□□□□ -1.56
HMGB1-208ENST00000490788 PDIA6Q15084 440 aa5.29□□□□□ -1.56
HMGB1-208ENST00000490788 ZBED2Q9BTP6 218 aa5.29□□□□□ -1.56
HMGB1-208ENST00000490788 ARIH1Q9Y4X5 557 aaPredicted RBP5.29□□□□□ -1.56
HMGB1-208ENST00000490788 LCE2AQ5TA79 106 aaPredicted RBP5.28□□□□□ -1.56
HMGB1-208ENST00000490788 TREML4Q6UXN2 200 aa5.28□□□□□ -1.56
HMGB1-208ENST00000490788 MRPL50Q8N5N7 158 aaKnown RBP5.28□□□□□ -1.56
HMGB1-208ENST00000490788 NBPF3Q9H094 633 aa5.28□□□□□ -1.56
HMGB1-208ENST00000490788 GRXCR2A6NFK2 248 aa5.27□□□□□ -1.57
HMGB1-208ENST00000490788 SMYD5Q6GMV2 418 aa5.27□□□□□ -1.57
HMGB1-208ENST00000490788 WNT2BQ93097 391 aa5.27□□□□□ -1.57
HMGB1-208ENST00000490788 ZDHHC16Q969W1 377 aa5.27□□□□□ -1.57
HMGB1-208ENST00000490788 DDX12PQ92771 950 aa5.26□□□□□ -1.57
HMGB1-208ENST00000490788 FBXW7Q969H0 707 aa5.26□□□□□ -1.57
HMGB1-208ENST00000490788 PHF14O94880 888 aa5.25□□□□□ -1.57
HMGB1-208ENST00000490788 ITGBL1O95965 494 aaPredicted RBP5.25□□□□□ -1.57
HMGB1-208ENST00000490788 TYW1BQ6NUM6 668 aa5.25□□□□□ -1.57
HMGB1-208ENST00000490788 EPAS1Q99814 870 aa5.25□□□□□ -1.57
HMGB1-208ENST00000490788 ADAM33Q9BZ11 813 aa5.24□□□□□ -1.57
HMGB1-208ENST00000490788 PPP1R3GB7ZBB8 358 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 SEMA3EO15041 775 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 MAP3K7O43318 606 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 NYAP1Q6ZVC0 841 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 LAPTM4BQ86VI4 370 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 RBM33Q96EV2 1170 aaKnown RBP5.23□□□□□ -1.57
HMGB1-208ENST00000490788 RABGEF1Q9UJ41 708 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 PCDHGA10Q9Y5H3 936 aa5.23□□□□□ -1.57
HMGB1-208ENST00000490788 ONECUT3O60422 494 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-208ENST00000490788 INSM1Q01101 510 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-208ENST00000490788 ANKK1Q8NFD2 765 aa5.22□□□□□ -1.57
HMGB1-208ENST00000490788 MLLT3P42568 568 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-208ENST00000490788 BCANQ96GW7 911 aa5.2□□□□□ -1.58
HMGB1-208ENST00000490788 NUTM2FA1L443 756 aa5.19□□□□□ -1.58
HMGB1-208ENST00000490788 SOWAHBA6NEL2 793 aa5.19□□□□□ -1.58
HMGB1-208ENST00000490788 EN1Q05925 392 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-208ENST00000490788 TESPA1A2RU30 521 aaPredicted RBP5.18□□□□□ -1.58
HMGB1-208ENST00000490788 OSBPP22059 807 aa5.18□□□□□ -1.58
HMGB1-208ENST00000490788 C6orf132Q5T0Z8 1188 aa5.18□□□□□ -1.58
HMGB1-208ENST00000490788 COL9A1P20849 921 aa5.17□□□□□ -1.58
HMGB1-208ENST00000490788 PROX2Q3B8N5 592 aa5.17□□□□□ -1.58
HMGB1-208ENST00000490788 CERKQ8TCT0 537 aa5.17□□□□□ -1.58
HMGB1-208ENST00000490788 WIPF1O43516 503 aa5.16□□□□□ -1.58
HMGB1-208ENST00000490788 KCNC4Q03721 635 aa5.16□□□□□ -1.58
HMGB1-208ENST00000490788 TSR1Q2NL82 804 aaKnown RBP5.16□□□□□ -1.58
HMGB1-208ENST00000490788 ZFRQ96KR1 1074 aaKnown RBP5.16□□□□□ -1.58
HMGB1-208ENST00000490788 KIAA1468Q9P260 1216 aa5.16□□□□□ -1.58
HMGB1-208ENST00000490788 BCAMP50895 628 aa5.14□□□□□ -1.59
HMGB1-208ENST00000490788 FAM98CQ17RN3 349 aaKnown RBP5.14□□□□□ -1.59
HMGB1-208ENST00000490788 RBM26Q5T8P6 1007 aaKnown RBP5.14□□□□□ -1.59
HMGB1-208ENST00000490788 GPIHBP1Q8IV16 184 aa5.14□□□□□ -1.59
HMGB1-208ENST00000490788 TRIM6-TRIM34B2RNG4 842 aa5.13□□□□□ -1.59
HMGB1-208ENST00000490788 FCHSD2O94868 740 aa5.13□□□□□ -1.59
HMGB1-208ENST00000490788 PACS2Q86VP3 889 aa5.13□□□□□ -1.59
HMGB1-208ENST00000490788 KRTAP4-8Q9BYQ9 185 aa5.13□□□□□ -1.59
HMGB1-208ENST00000490788 WBP1LQ9NX94 342 aa5.13□□□□□ -1.59
HMGB1-208ENST00000490788 LMOD2Q6P5Q4 547 aa5.12□□□□□ -1.59
HMGB1-208ENST00000490788 CDHR5Q9HBB8 845 aa5.12□□□□□ -1.59
HMGB1-208ENST00000490788 TSR3Q9UJK0 312 aaKnown RBP5.12□□□□□ -1.59
HMGB1-208ENST00000490788 PRIM1P49642 420 aaKnown RBP5.11□□□□□ -1.59
HMGB1-208ENST00000490788 PRSS12P56730 875 aa5.11□□□□□ -1.59
HMGB1-208ENST00000490788 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.11□□□□□ -1.59
HMGB1-208ENST00000490788 CDCA7LQ96GN5 454 aa5.11□□□□□ -1.59
HMGB1-208ENST00000490788 LRCH3Q96II8 777 aa5.11□□□□□ -1.59
HMGB1-208ENST00000490788 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-208ENST00000490788 FAM181BA6NEQ2 426 aa5.1□□□□□ -1.59
HMGB1-208ENST00000490788 NBPF26B4DH59 902 aa5.1□□□□□ -1.59
HMGB1-208ENST00000490788 PTGDRQ13258 359 aa5.1□□□□□ -1.59
HMGB1-208ENST00000490788 HIC1Q14526 733 aa5.1□□□□□ -1.59
HMGB1-208ENST00000490788 RBM27Q9P2N5 1060 aaKnown RBP5.1□□□□□ -1.59
HMGB1-208ENST00000490788 SEPT9Q9UHD8 586 aaPredicted RBP5.1□□□□□ -1.59
HMGB1-208ENST00000490788 HDGFP51858 240 aaKnown RBP5.09□□□□□ -1.59
HMGB1-208ENST00000490788 PADI6Q6TGC4 694 aa5.09□□□□□ -1.59
HMGB1-208ENST00000490788 HPS5Q9UPZ3 1129 aa5.09□□□□□ -1.59
HMGB1-208ENST00000490788 GNPATO15228 680 aa5.08□□□□□ -1.6
HMGB1-208ENST00000490788 SLC4A3P48751 1232 aa5.08□□□□□ -1.6
HMGB1-208ENST00000490788 KRI1Q8N9T8 703 aaKnown RBP5.08□□□□□ -1.6
HMGB1-208ENST00000490788 PNMA3Q9UL41 463 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms